Fragment Cluster 1: 3005,5012 Fragment Coverage tRNA-Pro-CGG-1:A_DSLE_TLE_Z Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-CGG-1 -GGCCGGAUGGUCUAGA--GGU--AUGAUUCUCGCUUCGGGUGCGAGAGGUCCCGGGUUCGAUUCCCGGUUCGGCCCCCA [1] 5012 .GGCCGGAUGGUCUAGA--GGU--AU...................................................... [1] 3005 .............................................................AUUCCCGGUUCGGCCCCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 2: 3019,5005,3028 Fragment Coverage tRNA-Ala-TGC-1:A_DSLE_TLE_Z tRNA-Ala-CGC-3:A_DSLE tRNA-Ala-CGC-4:A_DSLE Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-CGC-3 -GGGGGUAUAGCUCAGG--GGU--AGAGCGCUCGCUUCGCAUGCGAGAAGUCUGGGGUUCAAUUCCCCAUACCUCCACCA [1] tRNA-Ala-CGC-4 -GGGGGUAUAGCUCAGG--GGU--AGAGCGCUCGCUUCGCAUGUGAGAAGUCUGGGGUUCAAUUCCCCAUACCUCCACCA [2] tRNA-Ala-TGC-1 -GGGGGUAUAGCUCAGG--GGU--AGAGCGCUCGCUUUGCAUGCGAGAAGUCUGGGGUUCGAUUCCCCAUACCUCCACCA [3] 5005 .GGGGGUAUAGCUCAGG--GGU--AGAG.................................................... [1,2,3] 3028 ..........................................................UCGAUUCCCCAUACCUCCACCA [3] 3019 .............................................................AUUCCCCAUACCUCCACCA [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 3: 3018,5008,3002 Fragment Coverage tRNA-Gln-TTG-3:A_DSL tRNA-Gln-TTG-1:A_DSL_TLE_Z tRNA-Gln-TTG-4:A_DSL_TLE_Z tRNA-Gln-TTG-5:A_DSL_TLE_Z tRNA-Gln-CTG-1:TLE_Z tRNA-Gln-CTG-3:A_DSL_TLE_Z tRNA-Gln-CTG-2:A_DSL_TLE_Z Fragment Aminos Gln Fragment Alignment # STOCKHOLM 1.0 tRNA-Gln-CTG-1 -GGUUCCAUGGUGUAGU--GGUU-AGCACUCAGGACUCUGAAUCCUGCGA-CCCGAGUUCAAAUCUCGGUGGGACCUCCA [1] tRNA-Gln-CTG-2 -GGUUCCAUGGUGUAGC--GGUU-AGCACUCAGGACUCUGAAUCCUGCGA-CCCGAGUUCAAAUCUCGGUGGGACCUCCA [2] tRNA-Gln-CTG-3 -GGUUCCAUGGUGUAGC--GGUU-AGCACUCAGUACUCUGAAUCCUGCGA-CCCGAGUUCAAAUCUCGGUGGGACCUCCA [3] tRNA-Gln-TTG-1 -GGUUCCAUGGUGUAGC--GGUU-AGCACUCAGGACUUUGAAUCCUGCGA-CCCGAGUUCAAAUCUCGGUGGAACCUCCA [4] tRNA-Gln-TTG-3 -GGUUCCAUGGUGUAGC--GGUU-AGCACUCAGGACUUUGAAUCCUGCGA-CCCGAGUUCAAAUCUCAGUGGAACCUCCA [5] tRNA-Gln-TTG-4 -GGUUCCAUGGUGUAGC--GGUU-AGCACUCAUGACUUUGAAUCCUGCGA-CCCGAGUUCAAAUCUCGGUGGAACCUCCA [6] tRNA-Gln-TTG-5 -GGUUCCAUGGUGUAGC--GGUU-AGCACUCAGGACUUUGAAUCCUGCGA-UCCAAGUUCAAAUCUCGGUGGAACCUCCA [7] 5008 .GGUUCCAUGGUGUAGC--GG........................................................... [2,3,4,5,6,7] 3018 ..............................................................AUCUCGGUGGGACCUCCA [1,2,3] 3002 ..............................................................AUCUCGGUGGAACCUCCA [4,6,7] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 4: 5011,3021 Fragment Coverage tRNA-Asn-GTT-1:A_DSL_TE_Z tRNA-Asn-GTT-2:A_DSL_TE_Z Fragment Aminos Asn Fragment Alignment # STOCKHOLM 1.0 tRNA-Asn-GTT-1 -GCUUCCGUGGCGCAAUA-GGC--AGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCGGGAGCGCCA [1] tRNA-Asn-GTT-2 -GCUUCCGUGGCGCAAUA-GGC--AGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGAUUCGAGCCCACCCGGGAGCGCCA [2] 5011 .GCUUCCGUGGCGCAAUA-GG........................................................... [1,2] 3021 ...............................................................CCCACCCGGGAGCGCCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 5: 3012,3023,5009,5007 Fragment Coverage tRNA-Val-AAC-1:A_DSL_TE_Z tRNA-Val-AAC-2:A_DSL_TLE_Z tRNA-Val-AAC-3:A_DSLE_TLE_Z tRNA-Val-AAC-4:A_DSLE Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-AAC-1 -GGUCUCGUGGUGUAGU--GGUU-AUCACAUCUGUCUAACACACAGAAGGUCGGCGGUUCGAUCCCGCCCGAGAUCACCA [1] tRNA-Val-AAC-2 -GGUCUCGUGGUGUAGU--GGUU-AUCACAUCUGUCUAACACACAGAAGGUCGGUGGUUCGAGCCCGCCCGAGAUCACCA [2] tRNA-Val-AAC-3 -GGUUUCGUGGUGUAGU--GGUU-AUCACAUCUGUCUAACACACAGAAGGUCGGUGGUUCGAGCCCGCCCGAGAUCACCA [3] tRNA-Val-AAC-4 -GGUUUCGUGGUGUAGU--GGUU-AUCACAUCUGUCUAACACACAGAAGGUCGGUGGUUCGAGCCCGCCCGAGAUCUCCA [4] 5007 .GGUCUCGUGGUGUAGU--GG........................................................... [1,2] 5009 .GGUUUCGUGGUGUAGU--GGUU-AU...................................................... [3,4] 3012 ..........................................................UCGAGCCCGCCCGAGAUCACCA [2,3] 3023 ...............................................................CCCGCCCGAGAUCACCA [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 6: 3014,3029 Fragment Coverage tRNA-Val-TAC-4:TE_Z tRNA-Val-TAC-1:TLE_Z tRNA-Val-TAC-2:TE_Z tRNA-Val-CAC-1:TLE_Z Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-CAC-1 -GGUCCUGUGGUGUAGU--GGUU-AUCACGUCUGCUUCACACGCAGAAGGUCGCCGGUUCGAACCCGGCCAGGACCUCCA [1] tRNA-Val-TAC-1 -GGUCCUGUGGUGUAGU--GGUU-AUCACGUCUGCUUUACACGCAGAAGAUCGCCGGUUCGAACCCGGCCAGGACCUCCA [2] tRNA-Val-TAC-2 -GGUCCUGUGGUGUAGU--GGUU-AUCACGUCUGCUUUACACGCAGAAGAUCGCCGGUUCGAUCCCGGCCAGGACCUCCA [3] tRNA-Val-TAC-4 -GGUCCUGUGGUGUAGU--GGUU-AUCACGUCUGCUUUACACGCAGUAGGCCGCCGGUUCGAUCCCGGCCAGGACCUCCA [4] 3014 ..............................................................ACCCGGCCAGGACCUCCA [1,2] 3029 ...............................................................CCCGGCCAGGACCUCCA [1,2,3,4] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 7: 5010,3001 Fragment Coverage tRNA-Leu-CAA-2:A_DSL_TLE_Z tRNA-Leu-CAA-1:A_DSL_TLE_Z Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-CAA-1 -GCACGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G-CGUGGGUUCGAAUCCCACUUCGUGCACCA [1] tRNA-Leu-CAA-2 -GCACGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G-CGUGGGUUCGAAUCCCACUUCGUGCACCA [2] 5010 .GCACGGAUGGCCGAGU--GGU.......................................................... [1,2] 3001 ..............................................................AUCCCACUUCGUGCACCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 8: 5002,3020 Fragment Coverage tRNA-Gly-TCC-4:TLE_Z tRNA-Gly-TCC-5:TLE_Z tRNA-Gly-TCC-6:A_DSL tRNA-Gly-TCC-7:A_DSL tRNA-Gly-TCC-1:A_DSL_TLE_Z tRNA-Gly-TCC-2:A_DSL tRNA-Gly-TCC-3:A_DSL Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-TCC-1 -GCGUUCGUGGUGUAAU--GGUC-AGCAUGGAUGCCUUCCAAGCAUUCGA-CGGGGGUUCGAUU.....CCCC.CCGAACGCACCA [1] tRNA-Gly-TCC-2 -GCGUUCGUGGUGUAAU--GGUC-AGCAUGGAUGCCUUCCAAGCAUUCGA-CGGGGGUUCGAUU.....CCCC.UCGAACGCACCA [2] tRNA-Gly-TCC-3 -GCGUUCGUGGUGUAAU--GGUC-AGCAUGGAUGCCUUCCAAGCAUUCGA-CGGGGGUUCGAUU.....CCCCcCCGAACGCACCA [3] tRNA-Gly-TCC-4 -GAGUUCGUGGUGUAAU--GGUC-AGCAUGGAUGCCUUCCAAGCAUUCGA-CGGGGGUUCGAUU.....CCCC.CCGAACGCACCA [4] tRNA-Gly-TCC-5 -GCGUUCGGGGUGUAAU--GGUC-AGCAUGGAUGCCUUCCAAGCAUUCGA-CGGGGGUUCGAUU.....CCCC.CCGAACGCACCA [5] tRNA-Gly-TCC-6 -GCGUUCGUGGUGUAAU--GGUC-AGCAUGGAUGCCUUCCAAGCAUUCGA-CCGGGGUUCGAUU.....CCCC.CCGAAGGCACCA [6] tRNA-Gly-TCC-7 -GCGUUCGUGGUGUAAU--GGUC-GGCAUGGAUGCCUUCCAAGCAUUCGA-CGGGGGUUCGAUUcccccCCCC.CCGAACGCACCA [7] 5002 .GCGUUCGUGGUGUAAU--GGU................................................................ [1,2,3,6,7] 3020 .............................................................AUU.....CCCC.CCGAACGCACCA [1,4,5] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______.....>>>>.>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++.....====.========++++ // Fragment Cluster 9: 3004,5001 Fragment Coverage tRNA-Gly-GCC-2:A_DSLE_CS_TLE_Z tRNA-Gly-GCC-1:A_DSLE_CS_TLE_Z tRNA-Gly-GCC-3:A_DSLE_CS_TLE_Z tRNA-Gly-GCC-4:TLE_Z Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-GCC-1 -GCAUCGGUGGUUCAGU--GGU--AGAAUGCUCGCCUGCCACGCGGGCGG-CCCGGGUUCGAUUCCCGGUCGAUGCACCA [1] tRNA-Gly-GCC-2 -GCAUCGGUGGUUCAGU--GGU--AGAAUGCUCGCCUGCCACGCGUGCGG-CCCGGGUUCGAUUCCCGGUCGAUGCACCA [2] tRNA-Gly-GCC-3 -GCAUCGGUGGUUCAGU--GGU--AGAAUGCUCGCCUGCCACGCGG-CGG-CCCGGGUUCGAUUCCCGGUCGAUGCACCA [3] tRNA-Gly-GCC-4 -GCAUUGGUGGCUCAGU--GGU--AGAAUGCUCGCCUGCCACGCGGGCAG-CCCGGGUCCAAUUCCCGGUCGAUGCACCA [4] 5001 .GCAUCGGUGGUUCAGU--GGU--AGAAUGC................................................. [1,2,3] 3004 .............................................................AUUCCCGGUCGAUGCACCA [1,2,3,4] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 10: 5003,3016,5004 Fragment Coverage tRNA-Pro-TGG-3:TLE_Z tRNA-Pro-TGG-2:A_DSLE_CS tRNA-Pro-TGG-1:A_DSLE_CS_TLE_Z tRNA-Pro-TGG-7:A_DSLE_CS_TLE_Z tRNA-Pro-TGG-6:A_DSLE_CS tRNA-Pro-TGG-5:A_DSLE_CS_TLE_Z tRNA-Pro-TGG-4:A_DSLE_CS_TLE_Z tRNA-Pro-AGG-2:A_DSLE_TLE_Z tRNA-Pro-AGG-1:A_DSLE Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-AGG-1 -GGCCGGAUGGUCUAGU--GGU--AUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGAUCGAUCCCCGGUCCGGCCCCCA [1] tRNA-Pro-AGG-2 -GGCCGGAUGGUCUAGU--GGU--AUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGAUCGAUCCCCGGUUCGGCCCCCA [2] tRNA-Pro-TGG-1 -GGCCGAAUGGUCUAGU--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAUCCCCGGUUCGGCCCCCA [3] tRNA-Pro-TGG-2 -GGCCGAAUGGUCUAGU--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAUCCCCGGCUCGGCCCCCA [4] tRNA-Pro-TGG-3 -GGCCGAAUGGUCUAUU--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAUCCCCGGUUCGGCCCCCA [5] tRNA-Pro-TGG-4 -GGCCGAAUGGUCUAGU--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUGAAUCCCCGGUUCGGCCCCCA [6] tRNA-Pro-TGG-5 -GGCCGAAUGGUCUAGU--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGCGUUCAAUCCCCGGUUCGGCCCCCA [7] tRNA-Pro-TGG-6 -GGCCGAAUGGUCUAGU--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAUCCCCAGUUCGGCCCCCA [8] tRNA-Pro-TGG-7 -GGCCGAAUGGUCUAGU--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCUGGUUCAAUCCCCGGUUCGGCCCCCA [9] 5004 .GGCCGGAUGGUCUAGU--GGU--AUG..................................................... [1,2] 5003 .GGCCGAAUGGUCUAGU--GGU--AUGAUUC................................................. [3,4,6,7,8,9] 3016 .............................................................AUCCCCGGUUCGGCCCCCA [2,3,5,6,7,9] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 11: 3013,3003 Fragment Coverage tRNA-Glu-TTC-1:TLE_Z tRNA-Glu-TTC-3:TLE_Z tRNA-Glu-TTC-2:TLE_Z Fragment Aminos Glu Fragment Alignment # STOCKHOLM 1.0 tRNA-Glu-TTC-1 -UCCCAUGUGGUCUAGU--GGUU-AGGAUUCGUGGUUUUCACCCACGCGG-CCCGGGUUCGAUUCCCGGCAUGGGAACCA [1] tRNA-Glu-TTC-2 -UCCUAUGUGGUCUAGU--GGUU-AGGAUUCGUGGUUUUCACCCACGCGG-CCCGGUUUCGAUUCCCGGCAUGGGAACCA [2] tRNA-Glu-TTC-3 -UCCCAUGUGGUCUAGU--GGUU-AGGAUUCGUGGUUUUCACCCACGCGG-CCC-GGUUCGAUUCCCGGCAUGGGAACCA [3] 3013 ..........................................................UCGAUUCCCGGCAUGGGAACCA [1,2,3] 3003 .............................................................AUUCCCGGCAUGGGAACCA [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 12: 5006 Fragment Coverage tRNA-Ala-AGC-7:A_DSLE tRNA-Thr-AGT-3:A_DSLE tRNA-Ala-AGC-1:A_DSLE Fragment Aminos Thr,Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-AGC-1 -GGGGGUAUAGCUCAGU--GGU--AGAGCGCUCCCUUAGCAUGGGAGAGGGCUGGGGUUCAAUUCCCCAUACCUCCACCA [1] tRNA-Ala-AGC-7 -GGGGGUAUAGCUCAGU--GGU--AGAGCGCUCCCUUAGCAUGGGAGAGGGUUGGGGUUCAAUUCCCCAUACCUCCACCA [2] tRNA-Thr-AGT-3 -GGGGGUAUAGCUCAGU--GGU--AGAGCGCUCCCUUAGUAUGGGAGAGGGCUGGGGUUCAAUUCCCCAUACCUCCACCA [3] 5006 .GGGGGUAUAGCUCAGU--GGU--AGA..................................................... [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 13: 5013 Fragment Coverage tRNA-Ala-CGC-2:A_DSL Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-CGC-2 -GGGGGCAUAGCUCAGA--GGU--AGAGCGCCCGCUUCGCAUGCGGGAAGUCCGGGGUUCAAUCCCCCGUGCCUCCACCA [1] 5013 .GGGGGCAUAGCUCAGA--G............................................................ [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 14: 5014 Fragment Coverage tRNA-Ala-CGC-1:A_DSL Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-CGC-1 -GGGGGCAUAGCUCAGG--GGU--AGAGCGCUCGCUUCGCAUGCGAGAAGUCCGGGGUUCAAUUCCCCGUGCCUCCACCA [1] 5014 .GGGGGCAUAGCUCAGG--G............................................................ [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 15: 5015 Fragment Coverage tRNA-Asp-GTC-5:A_DSL tRNA-Asp-GTC-6:A_DSL tRNA-Asp-GTC-7:A_DSL tRNA-Asp-GTC-1:A_DSL tRNA-Asp-GTC-2:A_DSL tRNA-Asp-GTC-3:A_DSL Fragment Aminos Asp Fragment Alignment # STOCKHOLM 1.0 tRNA-Asp-GTC-1 -UCCUCGGUAGUAUAGU--GGUG-AGUAUCCGCGUCUGUCACAUGCGAGG-CCCGGGUUCAAUUCCCGGCCGGG.GAGCCA [1] tRNA-Asp-GTC-2 -UCCUCGGUAGUAUAGU--GGUG-AGUAUCCGCGUCUGUCACAUGCGAGA-CCCGGGUUCAAUUCCCGGCCGGG.GAGCCA [2] tRNA-Asp-GTC-3 -UCCUCGGUAGUAUAGU--GGUG-AGUAUCCGCGUCUGUCGCAUGCGAGA-CCCGGGUUCAAUUCCCGGCCGGG.GAGCCA [3] tRNA-Asp-GTC-5 -UCCUCGGUAGUAUAGU--GGUG-AGUAUCCGCGUCUGUCACAUGCGAGA-CCCGGGUUCAAUUCCCGGCCGGU.GAGCCA [4] tRNA-Asp-GTC-6 -UCCUCGGUAGUAUAGU--GGUG-AGUAUCCGCGUCUGUCACAUGCGAGA-CCCUGGUUCAAUUCCCGGCCGGG.GAGCCA [5] tRNA-Asp-GTC-7 -UCCUCGGUAGUAUAGU--GGUG-AGUAUCCGCGUCUGUCACAUGCGAGA-CCCGGGUUCAAUUCCCGGCCGGGaGAACCA [6] 5015 .UCCUCGGUAGUAUAGU--GGUG.......................................................... [1,2,3,4,5,6] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))).)):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++==========.==++++ // Fragment Cluster 16: 3006,5016 Fragment Coverage tRNA-Ile-AAT-1:A_DSL tRNA-Pro-AGG-5:A_DSL Fragment Aminos Pro,Ile Fragment Alignment # STOCKHOLM 1.0 tRNA-Ile-AAT-1 -GCCGCCAUAGCUCAGUC-GGUU-AGAGCGUGGGUCUAAUAAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCACCA [1] tRNA-Pro-AGG-5 -GCCGCCAUAGCUCAGUC-GGUU-AGAGCGUGGGCCAAGGCAGCCCAAGGUCGCAGGUUCGACCCCUGCUGGCGGCACCA [2] 5016 .GCCGCCAUAGCUCAGUC-GG........................................................... [1,2] 3006 ..............................................................CCCCUGCUGGCGGCACCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 17: 5017 Fragment Coverage tRNA-Leu-TAA-3:A_DSL tRNA-Leu-AAG-3:A_DSL tRNA-Leu-AAG-2:A_DSL Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-AAG-2 -GGAGAGAUGGCCGAGC--GGUCCAAGGCGCUGGUUUAAGG.CACCAGU-G-CGUGGGUUCGAAUCCCACUCUCUUCACCA [1] tRNA-Leu-AAG-3 -GGAGAGAUGGCCGAGC--GGUCUAAGGCGCUGGUUUAAGG.CACCAGU-G-CGUGGGUUCGAAUCCCACUCUCUUCACCA [2] tRNA-Leu-TAA-3 -GGAGAGAUGGCCGAGC--GGUCCAAGGCGCUGGUUUAAGGcAACCAGU-G-CGUGGGUUCGAAUCCCACUCUCUUCACCA [3] 5017 .GGAGAGAUGGCCGAGC--G............................................................. [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<______._>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***+.+=====+++++=====+++++++============++++ // Fragment Cluster 18: 3007 Fragment Coverage tRNA-Val-CAC-2:TE_Z Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-CAC-2 -GGUCCUCUGGUGUAGU--GGUU-AUCACGUCUGCUUCACACGCAGAAGGUCGCCGGUUCGAACCCGGCGAGGACCUCCA [1] 3007 ...............................................................CCCGGCGAGGACCUCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 19: 3008 Fragment Coverage tRNA-Thr-TGT-1:TE_Z Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-TGT-1 -GCCCUUAUAGCUCAGU--GGU--AGAGCGUUGGUCUUGUAAACCAAAGGUCCGUAGUUCAAUCCUGCGUGGGGGCACCA [1] 3008 ...............................................................CCUGCGUGGGGGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 20: 3009 Fragment Coverage tRNA-Ser-TGA-4:TLE_Z Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-TGA-4 -GCAACGAUGUCCGAGU--GGUU-AAGGAGAUGGACUUGAAAUCCAUU-G-CGUAGGUUCGAUUCCUGCUCGUUGCGCCA [1] 3009 ............................................................GAUUCCUGCUCGUUGCGCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 21: 3015 Fragment Coverage tRNA-Leu-AAG-1:TLE_Z tRNA-Leu-TAG-1:TLE_Z Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-AAG-1 -GGUGAGAUGGCCGAGC--GGUCUAAGGCGCUGGUUUAAGGCACCAGU-G-CGUGGGUUCGAAUCCCACUCUCAUCACCA [1] tRNA-Leu-TAG-1 -GGUGAGAUGGCCGAGU--GGUCUAAGGCGCUGGUUUUAGGCACCAGU-G-CGUGGGUUCGAAUCCCACUCUCAUCACCA [2] 3015 ..............................................................AUCCCACUCUCAUCACCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 22: 3017 Fragment Coverage tRNA-Ser-GCT-1:TLE_Z tRNA-Ser-GCT-3:TLE_Z Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-GCT-1 -GAUCAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGAGUUCGAAUCUCAUCCUGAUCGCCA [1] tRNA-Ser-GCT-3 -GAUCAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CG-----UCAAAUCUCAUCCUGAUCGCCA [2] 3017 ..............................................................AUCUCAUCCUGAUCGCCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 23: 3022 Fragment Coverage tRNA-Lys-CTT-3:TE_Z tRNA-Lys-CTT-2:TE_Z tRNA-Lys-CTT-1:TE_Z tRNA-Lys-CTT-7:TE_Z tRNA-Lys-CTT-5:TE_Z Fragment Aminos Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Lys-CTT-1 -GCCCGGUUAGCUCAGU................C-GGU--AGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCUCCA [1] tRNA-Lys-CTT-2 -GCCCGGUUAGCUCAGC................C-GGU--AGAGCACCAGACUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCUCCA [2] tRNA-Lys-CTT-3 -GCCCGGUUAGCUCAGU................C-GGU--AGAGCACCAGACUCUUAAUCUGGUUCUCGCGGGUUCGAGCCCCGCAUUGGGCUCCA [3] tRNA-Lys-CTT-5 -GCCUGGUUAGCUCAGU................C-GGU--AGAGCACCAGACUCUUAAUCUGGUUGUCGCGGUUUCGAGCCCCGCAUUGGGCUCCA [4] tRNA-Lys-CTT-7 -GCCCGGUUAGCUCAGUcgcgagucgcgagucgC-GGU--AGAGCACCAGAUUCUUAAUCUGGUUGUCGCGGGUUCGAGCCCCGCAUUGGGCUCCA [5] 3022 ...............................................................................CCCCGCAUUGGGCUCCA [1,2,3,4,5] #=GC SS_cons :(((((((,,<<<<___................________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++................++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 24: 3024 Fragment Coverage tRNA-Phe-GAA-4:TE_Z tRNA-Phe-GAA-1:TE_Z tRNA-Phe-GAA-2:TE_Z tRNA-Phe-GAA-3:TE_Z Fragment Aminos Phe Fragment Alignment # STOCKHOLM 1.0 tRNA-Phe-GAA-1 -GCCUCGAUAGCUCAGUU-GGG--AGAGCGCACGACUGAAGAUCGUGAGGUCACCAGUUCGAUCCUGGUUCGGGGCACCA [1] tRNA-Phe-GAA-2 -GCCUCGAUAGCUCAGUU-GGG--AGAGCGUACGACUGAAGAUCGUAAGGUCACCAGUUCGAUCCUGGUUCGGGGCACCA [2] tRNA-Phe-GAA-3 -GCCUCGAUAGCUCAGUU-GGG--AGAGCGCACGACUGAAGAUCGUGAGGUCACCAGUUCGAUCCUGGUUCGGGGCACCA [3] tRNA-Phe-GAA-4 -GCCUCGAUAGCUCAGUU-GGG--AGAGCGUACGACUGAAGAUCGUAAGGUCACCAGUUCGAUCCUGGUUCGGGGCACCA [4] 3024 ...............................................................CCUGGUUCGGGGCACCA [1,2,3,4] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 25: 3025 Fragment Coverage tRNA-Cys-GCA-2:TE_Z tRNA-Cys-GCA-1:TE_Z Fragment Aminos Cys Fragment Alignment # STOCKHOLM 1.0 tRNA-Cys-GCA-1 -GGGGGUAUAGCUCAGU--GGC--AGAGCAUUCGACUGCAGAUCGAGAGGUCCCUGGUUCAACUCCGGGUGCCCCCUCCA [1] tRNA-Cys-GCA-2 -UGGGGUAUAGCUCAGU--GGC--AGAGCAUUCGAUUGCAGAUCGAGAGGUCCCUGGUUCAACUCCGGGUGCCCCCUCCA [2] 3025 ...............................................................UCCGGGUGCCCCCUCCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 26: 3026 Fragment Coverage tRNA-Val-TAC-3:TLE_Z Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-TAC-3 -GGUCCUAUGGUGUAGU--GGUU-AUCACGUCUGCUUUACACGCAGAAGAUCGCCGGUUCGAACCCGGCUAGGACCUCCA [1] 3026 ..........................................................UCGAACCCGGCUAGGACCUCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 27: 3027 Fragment Coverage tRNA-Leu-CAG-2:TLE_Z Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-CAG-2 -GCCGUUCUGGCCGAGU--GGUCUAAGGCGCUGCGUUCAGGUCGCAGU-G-CGCAGGUUCGAAUCCUGCGGACGGCACCA [1] 3027 ..........................................................UCGAAUCCUGCGGACGGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 28: 3030 Fragment Coverage tRNA-Ser-CGA-1:TLE_Z tRNA-Ser-CGA-3:TLE_Z tRNA-Ser-CGA-2:TLE_Z tRNA-Ser-AGA-4:TLE_Z tRNA-Ser-AGA-3:TLE_Z tRNA-Ser-AGA-2:TLE_Z tRNA-Ser-AGA-1:TLE_Z Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-AGA-1 -GCAGUCA....UGUCCGAGU--GGUU-AAGGAGAUUGACUAGAAAUCAAUU-G-CGUAGGUUCGAAUCCUGCUGACUGCGCCA [1] tRNA-Ser-AGA-2 -GCAGUCA....UGUCCGAGU--GGUU-AAGGAGAUUGACUAGAAAUCAAUU-G-CGUAGGUUCGAAUCCUGCUGACUGCGCCA [2] tRNA-Ser-AGA-3 -GCAGUCA....UGUCCGAGU--GGUU-AAGGAGAUUGACUAGAAAUCAAUU-G-CGUAGGUUCGAAUCCUGCUGACUGCGCCA [3] tRNA-Ser-AGA-4 -GCCGUCA....UGUCCGAGU--GGUU-AAGGAGAUUGACUAGAAAUCAAUU-G-CGUAGGUUCGAAUCCUGCUGACUGCGCCA [4] tRNA-Ser-CGA-1 -GCAGUCA....UGUCCGAGU--GGUU-AAGGAGUUUGACUCGAAAUCAAAU-G-CGUAGGUUCGAAUCCUGCUGACUGCGCCA [5] tRNA-Ser-CGA-2 -GCAGUCA....UGUCCGAGU--GGUU-AAGGAGAUUGACUCGAAAUCAAUU-G-CGUAGGUUCGAAUCCUGCUGACUGCGCCA [6] tRNA-Ser-CGA-3 -GUGGUUAagaaUGUCCGAGU--GGUU-AAGGAGUUUGACUCGAAAUCAAAU-G-CGUAGGUUCGAAUCCUGCUGACUGCGCCA [7] 3030 ..............................................................UCGAAUCCUGCUGACUGCGCCA [1,2,3,4,5,6,7] #=GC SS_cons :(((((((....,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======....++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 29: 3031 Fragment Coverage tRNA-His-GTG-3:TLE_Z Fragment Aminos His Fragment Alignment # STOCKHOLM 1.0 tRNA-His-GTG-3 GGCCUGCUUAGUAUAGU--GGUU-AGUACUCCACGUUGUGGCCGUGGCGA-CGCUGGUUCGAUUCCAGCAGCAGGCACCA [1] 3031 ..........................................................UCGAUUCCAGCAGCAGGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 30: 3032 Fragment Coverage tRNA-Thr-AGT-1:TLE_Z Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-AGT-1 -GCCUCAUUGGCUCAGU--GGC--AGAGCGUCUGUCUAGUAAACAGAAGGUCGCUGGUUCGAUUCCAGCAUGAGGCACCA [1] 3032 ..........................................................UCGAUUCCAGCAUGAGGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ //