tDRnamer 1.0.0 (Dec 2021)
User: pchan
Run time: Sat Jan 29 02:10:13 2022
Command: tDRnamer --mode seq --seq ../../fasta/worm_trf.fa --db /www/lib/tDRnamer/ce11/ce11 --source euk --output trfdb_ce11 --minread 10 --minlen 15 --maxlen 60 --cores 4

Status: Checking input options
Status: Checking sequences in ../../fasta/worm_trf.fa
Total number of sequences: 47
Missing sequence name: 0
Sequence name with special characters: 0
Below minimum sequence length (15 bp): 0
Above maximum sequence length (60 bp): 0
Invalid sequence: 0
Total number of sequences after filtering: 47

Status: Reformat sequences in trfdb_ce11-filtered-seq.fa
Status: Search sequences against reference database
Status: Align sequences with bowtie2
47 reads; of these:
  47 (100.00%) were unpaired; of these:
    0 (0.00%) aligned 0 times
    1 (2.13%) aligned exactly 1 time
    46 (97.87%) aligned >1 times
100.00% overall alignment rate

Status: Filtering and identifying tDRs
Status: 47 sequences are identified as tDRs.
Status: Grouping tDRs
Status: Naming tDRs and summarizing results
Status: Process completed.