Fragment Cluster 1: 5010,5009,3009 Fragment Coverage tRNA-Gly-CCC-38:TLE_Z tRX-Gly-NNN-12:TLE_Z tRX-Gly-NNN-13:TLE_Z tRX-Gly-NNN-11:TLE_Z tRX-Gly-NNN-120:A_DSL tRNA-Gly-GCC-60:TLE_Z tRX-Gly-NNN-255:TLE_Z tRX-Gly-NNN-434:TLE_Z tRX-Gly-NNN-7:TLE_Z tRX-Gly-NNN-81:TLE_Z tRX-Gly-NNN-89:A_DSL_TLE_Z tRX-Gly-NNN-124:TLE_Z tRNA-Gly-GCC-80:TLE_Z tRNA-Gly-GCC-81:TLE_Z tRX-Gly-NNN-387:TLE_Z tRX-Gly-NNN-235:TLE_Z tRX-Gly-NNN-231:A_DSL tRX-Gly-NNN-230:A_DSLE_CS_TLE_Z tRNA-Gly-GCC-13:TLE_Z tRX-Gly-NNN-169:A_DSLE_CS tRX-Gly-NNN-161:A_DSL_TLE_Z tRX-Gly-NNN-163:TLE_Z tRX-Gly-NNN-165:TLE_Z tRNA-Gly-GCC-1:TLE_Z tRX-Gly-NNN-46:TLE_Z tRX-Gly-NNN-41:A_DSL tRNA-Gly-CCC-48:TLE_Z tRNA-Gly-CCC-49:TLE_Z tRX-Gly-NNN-48:A_DSL tRNA-Gly-CCC-40:TLE_Z tRNA-Gly-GCC-46:A_DSL tRX-Gly-NNN-4:A_DSL_TLE_Z tRNA-Gly-GCC-43:A_DSL tRX-Gly-NNN-8:TLE_Z tRX-Gly-NNN-106:TLE_Z tRNA-Gly-GCC-48:TLE_Z tRNA-Gly-GCC-2:TLE_Z tRNA-Gly-GCC-7:TLE_Z tRX-Gly-NNN-43:TLE_Z tRX-Gly-NNN-18:TLE_Z tRX-Gly-NNN-344:A_DSL tRX-Gly-NNN-349:TLE_Z tRNA-Gly-GCC-118:A_DSL tRNA-Gly-GCC-110:TLE_Z tRX-Gly-NNN-518:A_DSL tRX-Gly-NNN-109:TLE_Z tRX-Gly-NNN-190:A_DSLE_CS tRNA-Gly-CCC-9:TLE_Z tRX-Gly-NNN-467:TLE_Z tRX-Gly-NNN-25:TLE_Z tRNA-Gly-GCC-40:TLE_Z tRX-Gly-NNN-105:TLE_Z tRX-Gly-NNN-125:A_DSL_TLE_Z tRNA-Gly-CCC-39:TLE_Z tRX-Gly-NNN-121:TLE_Z tRNA-Gly-CCC-31:TLE_Z tRNA-Gly-CCC-33:TLE_Z tRNA-Gly-CCC-32:TLE_Z tRNA-Gly-CCC-35:A_DSL tRX-Gly-NNN-223:A_DSLE_CS_TLE_Z tRX-Gly-NNN-229:A_DSL tRNA-Gly-GCC-147:TLE_Z tRNA-Gly-GCC-6:TLE_Z tRX-Gly-NNN-258:TLE_Z tRX-Gly-NNN-172:A_DSL tRNA-Gly-GCC-78:A_DSLE_CS_TLE_Z tRX-Gly-NNN-286:A_DSL tRNA-Gly-GCC-125:A_DSL tRX-Gly-NNN-54:TLE_Z tRX-Gly-NNN-212:TLE_Z tRX-Gly-NNN-328:A_DSLE_CS tRX-Gly-NNN-315:TLE_Z tRX-Gly-NNN-527:TLE_Z tRX-Gly-NNN-141:TLE_Z tRX-Gly-NNN-257:TLE_Z tRX-Gly-NNN-146:TLE_Z tRX-Gly-NNN-60:TLE_Z tRX-Gly-NNN-148:TLE_Z tRX-Gly-NNN-36:A_DSL tRX-Gly-NNN-30:A_DSLE_CS tRX-Gly-NNN-33:A_DSLE_CS tRX-Gly-NNN-38:TLE_Z tRX-Gly-NNN-137:TLE_Z tRNA-Gly-CCC-21:A_DSL tRNA-Gly-CCC-28:A_DSL tRNA-Gly-CCC-29:A_DSL tRNA-Gly-GCC-114:TLE_Z tRNA-Gly-GCC-30:TLE_Z tRNA-Gly-GCC-49:TLE_Z tRX-Gly-NNN-241:A_DSL tRX-Gly-NNN-249:TLE_Z tRNA-Gly-GCC-63:TLE_Z tRNA-Gly-GCC-10:TLE_Z tRNA-Gly-GCC-3:TLE_Z tRX-Gly-NNN-67:TLE_Z tRX-Gly-NNN-63:A_DSL tRX-Gly-NNN-62:TLE_Z tRX-Gly-NNN-92:TLE_Z tRX-Gly-NNN-96:TLE_Z tRX-Gly-NNN-94:TLE_Z tRNA-Gly-CCC-16:TLE_Z tRX-Gly-NNN-98:TLE_Z tRNA-Gly-GCC-121:TLE_Z tRX-Gly-NNN-193:TLE_Z tRNA-Gly-GCC-139:TLE_Z tRX-Gly-NNN-86:TLE_Z tRX-Gly-NNN-195:TLE_Z tRX-Gly-NNN-208:A_DSL tRX-Gly-NNN-209:A_DSL tRNA-Gly-GCC-68:TLE_Z tRNA-Gly-GCC-65:TLE_Z tRNA-Gly-GCC-143:A_DSL tRNA-Gly-GCC-135:TLE_Z tRX-Gly-NNN-158:A_DSLE_CS tRX-Gly-NNN-150:A_DSL tRX-Gly-NNN-153:TLE_Z tRX-Gly-NNN-27:TLE_Z tRNA-Gly-GCC-133:TLE_Z tRX-Gly-NNN-114:TLE_Z tRX-Gly-NNN-73:A_DSLE_CS_TLE_Z tRX-Gly-NNN-57:TLE_Z tRNA-Gly-CCC-51:A_DSL tRX-Gly-NNN-52:A_DSL tRX-Gly-NNN-53:A_DSL tRNA-Gly-GCC-92:A_DSL tRNA-Gly-GCC-91:TLE_Z tRNA-Gly-GCC-56:A_DSL tRNA-Gly-GCC-52:A_DSL tRNA-Gly-GCC-20:TLE_Z tRNA-Gly-GCC-26:TLE_Z tRNA-Gly-GCC-24:TLE_Z tRX-Gly-NNN-160:TLE_Z tRNA-Gly-GCC-29:TLE_Z tRNA-Gly-GCC-104:TLE_Z tRX-Gly-NNN-119:TLE_Z tRNA-Gly-GCC-82:TLE_Z tRNA-Gly-GCC-108:A_DSL tRNA-Gly-GCC-107:A_DSL Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-CCC-9 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUUGCCUCCCAUGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [1] tRNA-Gly-CCC-16 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACGCGGGAGA-GCCGGG.UCCGAUUCCCGGCCAAUGCACCA [2] tRNA-Gly-CCC-21 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACGCGGGAGA-CCGGGG.UCCGAUUCCCGGCCAAUGCACCA [3] tRNA-Gly-CCC-28 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACGCGGGAGA-GCCAGG.UCCGAUUCCUGGCCAAUGCACCA [4] tRNA-Gly-CCC-29 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUUGCCUCCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCUAAUGCACCA [5] tRNA-Gly-CCC-31 -GCAUUGGUGGUUCAGU--GGU--AGCAUUCUCGCCUCCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [6] tRNA-Gly-CCC-32 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCGCGCGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [7] tRNA-Gly-CCC-33 -GCAUUGGUAGUUCAGU--GGA--AGAAUUCUCGCCUCCCAUGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [8] tRNA-Gly-CCC-35 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACGCGGGAGA-GCCGGG.UCUGAUUCCCGGCCAAUGCACCA [9] tRNA-Gly-CCC-38 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCAUGCGGGAGA-CCUGAG.UCCGAUUCCCGGCCAAUGCACCA [10] tRNA-Gly-CCC-39 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACGUGGGAGA-GCCGGG.UCCGAUUCCCGGCCAAUGCACCA [11] tRNA-Gly-CCC-40 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACACGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [12] tRNA-Gly-CCC-48 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCAUGCGGGAUA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [13] tRNA-Gly-CCC-49 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCACCUCCCAUGCGGGAGA-CCCAGG.UCCGAUUCCCGGCCAAUGCACCA [14] tRNA-Gly-CCC-51 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACGCAGGAGA-CCUGGA.UUCGAUUACCGGCCAAUGCACCA [15] tRNA-Gly-GCC-1 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCAUGCGGGAGA-CCCGGG.UUCGAUUCCCGGCCAAUGCACCA [16] tRNA-Gly-GCC-2 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGGG.UUCGAUUCCCGGCCAAUGCACCA [17] tRNA-Gly-GCC-3 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGG.UUCGAUUCCCGGCCAAUGCACCA [18] tRNA-Gly-GCC-6 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCAUGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [19] tRNA-Gly-GCC-7 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [20] tRNA-Gly-GCC-10 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGAGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [21] tRNA-Gly-GCC-13 -GCAUUGGUGGUUCAGU--GGUG--GAAUUCUCGCCUGCCACGCGGGAGA-CCUGGG.UUCGAUUCCCGGCCAAUGCACCA [22] tRNA-Gly-GCC-20 -GCAUUGGUGGUUCAAU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [23] tRNA-Gly-GCC-24 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [24] tRNA-Gly-GCC-26 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCAUGUGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [25] tRNA-Gly-GCC-29 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCAUGCGGAAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [26] tRNA-Gly-GCC-30 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCAGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [27] tRNA-Gly-GCC-40 -GCAUUGGUGGUUUAGU--GGU--AGAAUUUUCGCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [28] tRNA-Gly-GCC-43 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCUGGG.UCCGAUUCCCGGUCAAUGCACCA [29] tRNA-Gly-GCC-46 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUUGCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGUCAAUGCACCA [30] tRNA-Gly-GCC-48 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CUCGGG.UCCGAUUCCCGGCCAAUGCACCA [31] tRNA-Gly-GCC-49 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCAGG.UCCGAUUCCCGGCCAAUGCACCA [32] tRNA-Gly-GCC-52 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCAUGCGGGAGA-CCCGGG.UCCUAUUCCCGGCCAAUGCACCA [33] tRNA-Gly-GCC-56 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGGG.UGCGAUUCCUGGCCAAUGCACCA [34] tRNA-Gly-GCC-60 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGAG.UCCGAUUCCCGGCCAAUGCACCA [35] tRNA-Gly-GCC-63 -ACAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [36] tRNA-Gly-GCC-65 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGGA.UCCGAUUCCCGGCCAAUGCACCA [37] tRNA-Gly-GCC-68 -GCCUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCAAGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [38] tRNA-Gly-GCC-78 -GCAUUGGUGGUUCAGU--GGA--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [39] tRNA-Gly-GCC-80 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCCGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [40] tRNA-Gly-GCC-81 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCGUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [41] tRNA-Gly-GCC-82 -GCAUUGGUGGUUCAGU--GGU--AGAUUUCUCGCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [42] tRNA-Gly-GCC-91 -UCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [43] tRNA-Gly-GCC-92 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCAUGUGGGAGA-CCCGGG.UCUGAUUCCCGGCCAAUGCACCA [44] tRNA-Gly-GCC-104 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACUCGAGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [45] tRNA-Gly-GCC-107 -GCAUUGGUGGUUCAGU--GGU--AGAAUUAUCGCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [46] tRNA-Gly-GCC-108 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGUGGGAGA-CCCGGG.UCUGAUUCCCGGCCAAUGCACCA [47] tRNA-Gly-GCC-110 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUUGCCUGCCACGCGGAAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [48] tRNA-Gly-GCC-114 -GCAUUGGUGGUUCAGA--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCUGG.UUCGAUUCCCGGCCAAUGCACCA [49] tRNA-Gly-GCC-118 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCAUGCGGGAGA-CCUGGG.UCCGAUUUCCGGCCAAUGCACCA [50] tRNA-Gly-GCC-121 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCAGGGGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [51] tRNA-Gly-GCC-125 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCACCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCUGGCCAAUGCACCA [52] tRNA-Gly-GCC-133 -GCAUUGGUGGUUCAGU--GGU--AAAAUUCUCCCCUGCCAUGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [53] tRNA-Gly-GCC-135 -GCAUUGGUGGUUCAGU--GGU--AGAGUUCUUGCCUGCCAUGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [54] tRNA-Gly-GCC-139 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUUGCCUGCCACGCGGGAGA-CCCGAG.UCCGAUUCCCGGCCAAUGCACCA [55] tRNA-Gly-GCC-143 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGUGGGAGA-CCCAGG.UCCGAUUCCCGGCCAAUGCACCA [56] tRNA-Gly-GCC-147 -GCAUUGGUGGUUUAGU--GGU--AGAAUUCUUGCCUGCCACACAGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [57] tRX-Gly-NNN-4 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACGCAGGAGA-CCCAGG.UCCGAUUCCCGGCCAAUGCACCA [58] tRX-Gly-NNN-7 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCACCUCCCAUGCGGGAGA-CCCGAG.UCCGAUUCCCGGCCAAUGCACCA [59] tRX-Gly-NNN-8 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUUGCCUCCCAUGCGGGAGA-CCCGUG.UCCGAUUCCCGGCCAAUGCACCA [60] tRX-Gly-NNN-11 -GCAUUGGUGGUUCAGU--GGU--AGAUUUCUCGCCUCCCACGCGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [61] tRX-Gly-NNN-12 -GCAUUAGUGGUUCAGU--GGU--AGAAUUCUUGCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [62] tRX-Gly-NNN-13 -GCAUUGGUGGUUCAGU--GGU--AGAAUGCUCCCCUGCCACGUGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [63] tRX-Gly-NNN-18 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACACGGGAAA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [64] tRX-Gly-NNN-25 -GCAUUGGUAGUUCAGU--GGU--AGAAUUCUCGCCUCCCACGUGGGAGA-GCCGGG.UCCGAUUCCCGGCCAAUGCACCA [65] tRX-Gly-NNN-27 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGAGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [66] tRX-Gly-NNN-30 -GCAUUGGUGGUUCAGU--GGA--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCUGGCCAAUGCACCA [67] tRX-Gly-NNN-33 -GCAUUGGUGGUUCAGU--GGA--AGAAUUCUCGCCUGCCACGUGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [68] tRX-Gly-NNN-36 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-UCCAGG.UCCAAUUCCCGGCCAAUGCACCA [69] tRX-Gly-NNN-38 -GCAUUGGUGGAUCAGC--GGU--AGAAUUCUCGCCUCCCACGCGGGAGA-GCCGGG.UUCGAUUCCCGGCCAAUGCACCA [70] tRX-Gly-NNN-41 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGUG.UCUGAUUCCCGGCCAAUGCACCA [71] tRX-Gly-NNN-43 -GCAAUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGUGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [72] tRX-Gly-NNN-46 -GCAUGGGUGGUUCAGU--GGU--AGAAUUCUUGCCUCCCACGCAGGAGA-GCCGGG.UCCGAUUCCCGGCCAAUGCACCA [73] tRX-Gly-NNN-48 -GCAUUGGUGGUUCAGU--GGU--AAAAUUCUCGCCUCCCACGCGGGAGA-CCCAGA.UUCGAUUACCGGCCAAUGCACCA [74] tRX-Gly-NNN-52 -GCAUUGGUGGUUCAGU--GGU--AGAGUUCUCGUCUGCCAUGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [75] tRX-Gly-NNN-53 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGAACCA [76] tRX-Gly-NNN-54 -GCAUUGGUGGUUCAGU--GGU--AGCAUUCUCGCCUCCCACGCAGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [77] tRX-Gly-NNN-57 -GCAUUGGUGCUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [78] tRX-Gly-NNN-60 -GCAUUGGAGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGGA.UUCGAUUCCCGGCCAAUGCACCA [79] tRX-Gly-NNN-62 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACGUGGGAGA-CCCUGG.UCCGAUUCCCGGCCAAUGCACCA [80] tRX-Gly-NNN-63 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACGCGGGAGA-GCCGGG.UCCGAUUACCGGCCAAUGCACCA [81] tRX-Gly-NNN-67 -GCAUUGGUGCUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCAGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [82] tRX-Gly-NNN-73 -GCAUUGGUGGUUCAGU--GGA--AGAAUUCUCGCCUGCCACACGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [83] tRX-Gly-NNN-81 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCAAGG.UCCGAUUCCCGGCCAAUGCACCA [84] tRX-Gly-NNN-86 -GCGUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACACGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [85] tRX-Gly-NNN-89 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCUGGGGA-GCCGGG.UCCGAUUCCCGGCCAAUGCACCA [86] tRX-Gly-NNN-92 -GCAUUGGUGGUUCAGU--GGUG--GAAUUCUCGCCUGCCAUGCUGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [87] tRX-Gly-NNN-94 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGAGGGAGA-CCCAGG.UCCGAUUCCCGGCCAAUGCACCA [88] tRX-Gly-NNN-96 -GCAUUGGUGGUUCACU--GGU--AGAACUCUCGCCUGCCAUGUGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [89] tRX-Gly-NNN-98 -GUGUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACGCGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [90] tRX-Gly-NNN-105 -GCAUUGGUGUUUCACU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [91] tRX-Gly-NNN-106 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCACCUCCCACGCAGGAAG-CCUGGG.UUCGAUUCCCGGCCAAUGCACCA [92] tRX-Gly-NNN-109 -ACAUUGGUGGUUCAGU--GGU--AGAAUUCUUGCCUGCCACGCGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [93] tRX-Gly-NNN-114 -GCAUUGGUGAUUCAGU--UGU--AGAAUUCUCGCCUCCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [94] tRX-Gly-NNN-119 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACGCGGUAGA-GCCGGG.UCCGAUUCCCGGCCAAUGCACCA [95] tRX-Gly-NNN-120 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCCCCUGCCAUGCGGGAGA-CCCGGC.UCCGAUUCCCGGCCAAUGCACCA [96] tRX-Gly-NNN-121 -GCAUUGUUGUUUUAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [97] tRX-Gly-NNN-124 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCAUCUGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [98] tRX-Gly-NNN-125 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUUGCCUGCCACACGGAAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [99] tRX-Gly-NNN-137 -GCAUUGGUGGUUCAGU--GGU--AGAUUUCUCGCCUGCCACGCGGGAGA-CCAGGG.UCCGAUUCCCGGCCAAUGCACCA [100] tRX-Gly-NNN-141 -GCAUUGGUGGUUUAGU--GGU--AGAAUUCUCGCCUCCCACACAGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [101] tRX-Gly-NNN-146 -GCAUUGGUGGUUCAGU--GGU--AGAAUUUGCGCCUCCCAAGCGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [102] tRX-Gly-NNN-148 -GCAUUGGUGGUUCAGU--GGU--AGAUUUCUAGCCUGCCAUGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [103] tRX-Gly-NNN-150 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCUGGG.UCCGAUUCCUGGCCAAAGCACCA [104] tRX-Gly-NNN-153 -GCAUUGGGGGUUCAGU--GGU--AGAAUUCUCCCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [105] tRX-Gly-NNN-158 -GCAUUGGUGGUUCAGU--GGA--AGAAUUCUUGCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCUGGCCAAUGCACCA [106] tRX-Gly-NNN-160 -GCAUUGGUGGUUCACA--GGU--AGAAUUCUAGCCUCCCAUGCUGGGGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [107] tRX-Gly-NNN-161 -GCAUUGGUGGUUCAGU--GGU--AGACUUCUUGCCUGCCACGCGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [108] tRX-Gly-NNN-163 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCUCCUGCCACGCUGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [109] tRX-Gly-NNN-165 -GCAUUGGUGGGUCAGU--GGU--AGAGUUCUCGCCUCCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [110] tRX-Gly-NNN-169 -GCAUUGGUGGUUCAGU--GGA--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGGG.UCUGAUUCCUGGCCAAUGCACCA [111] tRX-Gly-NNN-172 -GCAUUGGUGGUUCAGU--GGU--AGAACUCUCGCCUGCCAUGCGGGAGA-UCCAGG.UGCGACUCCCGGCCAAUGCACCA [112] tRX-Gly-NNN-190 -GCAUUGGUGGUUCAGU--GGA--AGAAUUCUCGCCUGCCACGUGGGAGA-CCCGGG.UCCGAUUCCUGGCCAAUGCACCA [113] tRX-Gly-NNN-193 -GCAUUGGUGGUUUAGU--GGU--AGACUUCUCGCCUGCCAAGCGGGAGA-CCCUGG.UCCGAUUCCCGGCCAAUGCACCA [114] tRX-Gly-NNN-195 -GCAUUGGUGGUUCAGU--GGU--AGAAGUCUCGCCUGCCAUGCGGGAGA-CCCGUG.UGCGAUUCCCGGCCAAUGCACCA [115] tRX-Gly-NNN-208 -GCAUUGGUGGUUCAGU--GGU--AGAAAUCUCGCCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCAAAUGCACCA [116] tRX-Gly-NNN-209 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACGCGGUAGA-CCUGGG.UCCGAAUCCCGGCCAAUGCACCA [117] tRX-Gly-NNN-212 -GCAUUAGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACGUGGGAGA-GCCGGG.UCCGAUUCCCGGCCAAUGCACCA [118] tRX-Gly-NNN-223 -GCAUUGGUGGUUCAGU--GGA--AGAAUUCUCGCCUGCCACGCGGGAG--ACCCGG.UCCGAUUCCCGGCCAAUGCACCA [119] tRX-Gly-NNN-229 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACUCGAGAGA-CCCGGG.UCCGAUUCCUGGCUAAUGCACCA [120] tRX-Gly-NNN-230 -GCAUUGGUGGUUCAGU--GGA--AGAAUUCUCGCCUCCCACGCAGGAGA-CCCAGG.UCCGAUUCCCGGCCAAUGCACCA [121] tRX-Gly-NNN-231 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCAUGCCGGAGA-CCUGUG.UCCGAUUCCCAGCCAAUGCACCA [122] tRX-Gly-NNN-235 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUACCACGUGGGAGA-CCUGCG.UCCGAUUCCCGGCCAAUGCACCA [123] tRX-Gly-NNN-241 -GCAUUGGUGGUUCAGU--GGUG--GAAUUCUCGCCUGCCACGCUGGAGA-CCUGGG.UCCAAUUCCCGGCCAAUGCACCA [124] tRX-Gly-NNN-249 -GCAUUGGUGGUUCACA--GGU--AGAAUUCUAGCCUCCCAUGCUGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [125] tRX-Gly-NNN-255 -GCAUUAAUGGUUCAGU--GGU--AGAAUUCUCACCUCCCACGCGGGAGA-CCUGGG.UUCGAUUCCCGGCCAAUGCACCA [126] tRX-Gly-NNN-257 -GCAUCGGUGGUUCAGU--GGU--AGAUUUCUCGCCUCCCACGCGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [127] tRX-Gly-NNN-258 -GCAUUGGUGGUUCAGU--CGU--AGAAUUCUCGCCUGCCACACGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [128] tRX-Gly-NNN-286 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUAGCCUGCCAUGCGGGAGA-CCCAGG.UGCAAUUCCCGGCCAAUGCACCA [129] tRX-Gly-NNN-315 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUUGCCUGCCACGCGGUAGA-CUCGGG.UCCGAUUCCCGGCCAAUGCACCA [130] tRX-Gly-NNN-328 -GCAUUGGUGGUUCAGU--GGA--AGAAUUCUUGCCUGCCACGCGGGAGA-CCUGGG.UCCGAUUCCUGGCCAAUGCACCA [131] tRX-Gly-NNN-344 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCACCUGCCAUGCGGGAGG-UCCAGG.UGCUAUUCCUGGCCAAUGCACCA [132] tRX-Gly-NNN-349 -GUGUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACACGGGAGA-CCUGGG.UCCGAUUCCCGGCCAAUGCACCA [133] tRX-Gly-NNN-387 -GCAUUGGUGAUUCAGU--GGU--AGUAUUCUCACCUGCCACGCGGGAGA-CCCGGG.UCCGAUUCCCGGCCAAUGCACCA [134] tRX-Gly-NNN-434 -GCGUUGGUGGUUCAGU--GGUG--GAAUUCCUGCCUGCCACGCUGGAGA-CCCGUG.UCCGAUUCCCGGCCAAUGCACCA [135] tRX-Gly-NNN-467 -GUAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAUA-CUUGGG.UCCGAUUCCCGGCCAAUGCACCA [136] tRX-Gly-NNN-518 -GCAUUGGUGGUUCAGU--GGU--AUAAUUCUCGCCUCCCACGCGGGA-G-ACCAGGgUCCGAUUCCUGGCCAAUGCACCA [137] tRX-Gly-NNN-527 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCGCGCCUCCCACGUGGGAGA-CCUGGG.ACCGAUUCCCGGCCAAUGCACCA [138] 5010 .GCAUUGGUGGUUCAGU--GGU........................................................... [3,4,5,9,15,29,30,33,34,44,46,47,50,52,56,58,69,71,74,75,76,81,86,96,99,104,108,112,116,117,120,122,124,129,132,137] 5009 .GCAUUGGUGGUUCAGU--GGA--AGAAUUCU................................................. [39,67,68,83,106,111,113,119,121,131] 3009 ............................................................CGAUUCCCGGCCAAUGCACCA [1,2,6,7,8,10,11,12,13,14,16,17,18,19,20,21,22,23,24,25,26,27,28,31,32,35,36,37,38,39,40,41,42,43,45,48,49,51,53,54,55,57,58,59,60,61,62,63,64,65,66,70,72,73,77,78,79,80,82,83,84,85,86,87,88,89,90,91,92,93,94,95,97,98,99,100,101,102,103,105,107,108,109,110,114,115,118,119,121,123,125,126,127,128,130,133,134,135,136,138] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<._______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====.+++++++============++++ // Fragment Cluster 2: 5046,5045 Fragment Coverage tRNA-Cys-GCA-1:A_DSLE_CS tRNA-Cys-GCA-2:A_DSLE_CS tRNA-Cys-GCA-4:A_DSLE_CS tRNA-Cys-GCA-5:A_DSLE_CS tRNA-Cys-GCA-6:A_DSLE_CS tRX-Cys-NNN-1:A_DSLE_CS tRX-Cys-NNN-9:A_DSL tRNA-Cys-GCA-3:A_DSLE_CS tRNA-Cys-GCA-7:A_DSLE_CS Fragment Aminos Cys Fragment Alignment # STOCKHOLM 1.0 tRNA-Cys-GCA-1 -GGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCUCCA [1] tRNA-Cys-GCA-2 -GGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUCCA [2] tRNA-Cys-GCA-3 -GGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCCAGUUCAAAUCUGGGUGCCCCCUCCA [3] tRNA-Cys-GCA-4 -GGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCUCUGGUUCAAAUCCAGAUGCCCCCUCCA [4] tRNA-Cys-GCA-5 -GGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAUAUCCGGGUGCCCCCUCCA [5] tRNA-Cys-GCA-6 -GGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAUGUCCGGGUGCCCCCUCCA [6] tRNA-Cys-GCA-7 -GGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUUAAAUCUGGAUGCCCCCUCCA [7] tRX-Cys-NNN-1 -GGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCCAGUUCAAAUCCGUGUGCCCCCUCCA [8] tRX-Cys-NNN-9 -GGGGGUAUAGCUCAGU--GGG--AGAAUAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGUGUGCCCCCUCCA [9] 5045 .GGGGGUAUAGCUCAGU--GG........................................................... [1,2,3,4,5,6,7,8,9] 5046 .GGGGGUAUAGCUCAGU--GGU--AGAGCAUU................................................ [1,2,3,4,5,6,7,8] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 3: 3012,5019,5020 Fragment Coverage tRNA-Lys-CTT-62:A_DSLE_CS tRNA-Lys-CTT-61:A_DSL tRNA-Lys-CTT-35:A_DSL tRNA-Lys-CTT-193:A_DSLE_CS tRX-Lys-NNN-1:A_DSL tRX-Lys-NNN-6:A_DSLE_CS tRNA-Lys-CTT-120:A_DSLE_CS tRX-Lys-NNN-139:A_DSL tRNA-Lys-CTT-128:A_DSLE_CS tRNA-Lys-CTT-129:A_DSL tRX-Lys-NNN-313:A_DSL tRNA-Met-CAT-111:A_DSLE_CS tRNA-Lys-CTT-24:A_DSL tRNA-Lys-CTT-228:A_DSL tRNA-Lys-CTT-224:A_DSL tRNA-Lys-CTT-220:A_DSL tRNA-Lys-CTT-139:A_DSL tRX-Lys-NNN-170:A_DSLE_CS tRX-Lys-NNN-57:A_DSLE_CS tRX-Lys-NNN-289:A_DSL tRX-Lys-NNN-281:A_DSL tRNA-Lys-CTT-19:A_DSL tRNA-Lys-CTT-212:A_DSL tRNA-Lys-CTT-82:A_DSLE_CS tRNA-Lys-CTT-141:A_DSLE_CS tRNA-Lys-CTT-134:A_DSL tRNA-Lys-CTT-131:A_DSL tRX-Lys-NNN-11:A_DSLE_CS tRNA-Lys-CTT-44:A_DSL tRNA-Lys-CTT-47:A_DSLE_CS tRNA-Lys-CTT-42:A_DSL tRNA-Lys-CTT-48:A_DSLE_CS tRNA-Lys-CTT-113:A_DSLE_CS tRNA-Lys-CTT-206:A_DSLE_CS tRNA-Lys-CTT-203:A_DSLE_CS tRNA-Lys-CTT-201:A_DSL tRNA-Lys-CTT-208:A_DSL tRNA-Lys-CTT-158:A_DSLE_CS tRX-Lys-NNN-117:A_DSL tRX-Lys-NNN-98:A_DSLE_CS tRX-Lys-NNN-71:A_DSL tRNA-Lys-CTT-183:A_DSL tRX-Lys-NNN-123:A_DSL tRX-Lys-NNN-36:A_DSL tRX-Lys-NNN-66:A_DSLE_CS tRNA-Lys-CTT-31:A_DSLE_CS tRNA-Lys-CTT-30:A_DSLE_CS tRNA-Lys-CTT-163:A_DSLE_CS tRX-Lys-NNN-160:A_DSLE_CS tRX-Lys-NNN-168:A_DSLE_CS tRNA-Lys-CTT-2:A_DSL tRX-Lys-NNN-61:A_DSL tRX-Lys-NNN-299:A_DSL Fragment Aminos Met,Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Lys-CTT-2 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCACCA [1] tRNA-Lys-CTT-19 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUAGGCGCCA [2] tRNA-Lys-CTT-24 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGACGCCA [3] tRNA-Lys-CTT-30 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUUGAGCCCCACGUUGGGCACCA [4] tRNA-Lys-CTT-31 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAAGGUCGUGGGUUUGAGCCCCACGUUGGGCGCCA [5] tRNA-Lys-CTT-35 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUUAGGGUCGUGGGUUCGAGCCCCACGUUGGGCUCCA [6] tRNA-Lys-CTT-42 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGUCGCCA [7] tRNA-Lys-CTT-44 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGGGCCCCACGUUGGGCGCCA [8] tRNA-Lys-CTT-47 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCAUGGGUUCAAGCCCCACGUUGGGCGCCA [9] tRNA-Lys-CTT-48 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCAUGUUGGGUGCCA [10] tRNA-Lys-CTT-61 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGCGACUCUUAAUCUCAGGGUUGUGGGUUCGAGCCCCACGUUGGGCGCCA [11] tRNA-Lys-CTT-62 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUACUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGCCA [12] tRNA-Lys-CTT-82 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAUUCUCAGGGUCGUGGGUUCAAGCCCCACGUUGGGCGCCA [13] tRNA-Lys-CTT-113 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCCCGUUGGGUGCCA [14] tRNA-Lys-CTT-120 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCUAGCCCCACGUUGGGCGCCA [15] tRNA-Lys-CTT-128 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUUGUGGGUUUGAGCCCCACGUUGGUCGCCA [16] tRNA-Lys-CTT-129 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGAGUCGUGGGUUUGAGCCCCAUGUUGGGCGCCA [17] tRNA-Lys-CTT-131 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUGGGGCGCCA [18] tRNA-Lys-CTT-134 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGAGUCGUUGGUUCGAGCCCCACGUUGGGCGCCA [19] tRNA-Lys-CTT-139 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGAUUCUUAAUCUCAGGGUCGUGGAUUCGAGCCCCACGUUGGGCGCCA [20] tRNA-Lys-CTT-141 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGCUCGUGGGUUCGAGCCCCAUGUUGGGUGCCA [21] tRNA-Lys-CTT-158 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCUUGGGUUCGAGCCCCACGUUGGGUGCCA [22] tRNA-Lys-CTT-163 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUGUCAGGGUCGUGGGUUCCAGCCCCACGUUGGGCACCA [23] tRNA-Lys-CTT-183 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAUUCUCAGGGUCGUGAGUUCGAGCCCCACGUUGGGCCCCA [24] tRNA-Lys-CTT-193 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUGUCAGGGUUGUGGGUUCGAGCCCCACGUUGGGUCCCA [25] tRNA-Lys-CTT-201 -GCCCGGCUAGCUCAGUC-GGU--AGAGGUUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGCCA [26] tRNA-Lys-CTT-203 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUUG-GGGUUCGAGCCCCACGUUGGGCGCCA [27] tRNA-Lys-CTT-206 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGACACUCUUAAUCUCAGGAUCGUGGGUUUGAGCCCCAUGUUGGGCGCCA [28] tRNA-Lys-CTT-208 -GCCCGGCUAGCUCAGUC-GGU--AGAGCGUGAGACUCUUAAUGUCAGGGUUGUGGGAUCGAGCCCCACGUUGGGUGCCA [29] tRNA-Lys-CTT-212 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUGUCAGGGUGGUGGGUUCGAGCUCCACGUUGGGCGCCA [30] tRNA-Lys-CTT-220 -GCCCGGCUAGCUCAGUC-GCU--UGAGCAUGAGACUCUUAAUGUCAGGGUUGUGGGUUCGAGCCCCACGUUGGGCGCCA [31] tRNA-Lys-CTT-224 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGCU-GAGCCCCACGUUGGGCGCCA [32] tRNA-Lys-CTT-228 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUGUCAGGGUAGUGGGUUCGAGCUCCACGUUGGGUGCCA [33] tRX-Lys-NNN-1 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCAUCUUGGGCGCCA [34] tRX-Lys-NNN-6 AGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCAUGUUGGUUGCCA [35] tRX-Lys-NNN-11 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCUUCGUUGGGCGCCA [36] tRX-Lys-NNN-36 -GCCCGGCUAGCUCAGUC-GGU--AGAGCGUGAGACUCUUAAUGUCAGGGUCGUGGGUUCGAGCCCCACGAUGGGCGCCA [37] tRX-Lys-NNN-57 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUGUCAGGGUAGUGCGUUCGAGCCCCACGUUGGGCGCCA [38] tRX-Lys-NNN-61 -GCCCGGCUAGCUCAGUC-GGU--AGCGUAUGAGACUCUUAAUGUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGCCA [39] tRX-Lys-NNN-66 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUGUCAGGGUCGUGGGUUAGAGCCCCAUAUUGGGCGCCA [40] tRX-Lys-NNN-71 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUUGAGCCCUUCGUUGGGUGCCA [41] tRX-Lys-NNN-98 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGGCUCUUAAUGUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGUCCCA [42] tRX-Lys-NNN-117 -GCCCGGCUAGCUCAGUC-GGU--AGCGCAUGAGAUUCUUAAUCUCAGGGUCGUAGGUUCGAGCCCCACGUUGGGUGCCA [43] tRX-Lys-NNN-123 -GCCCGGCUAGCUCAGUC-GAU--AGAGCAUGAGACUCUUAAUCUCAGCGUCGUGGGUUAGAGCCCCACAUUGGGUGCCA [44] tRX-Lys-NNN-139 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACGCUUAAUGUCAAGGUUGUGGGUUAGAGCCCCACGUUGGGCGCCA [45] tRX-Lys-NNN-160 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGU---UUCGAGCCCCACGUUGGGCACCA [46] tRX-Lys-NNN-168 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUGUCAGGGUGGUGAGUUCGAGCCCCACGUUCGGCGCCA [47] tRX-Lys-NNN-170 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGGCUCUUAAUGUCAGGGUCGUGGGUUCGAGCCCCACAUUGGGUCCCA [48] tRX-Lys-NNN-281 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUGUCAGGGUAGUGGGUUCGAACCCCAAGUUGGGUGCCA [49] tRX-Lys-NNN-289 -GCCCGGCUAGCUCAGUC-GAU--AGAGCAUGAGACUCUUAAUCUCAGCACCGUGGGUUAGAGCCCCACAUUGGGCGCCA [50] tRX-Lys-NNN-299 -GCCCGGCUAGCUCAGUC-GGU--AGAUCAUGAGACUCUUAAUGUCAUGGUAGUGGGUUCGAGCCCCUCGUUGGGCGCCA [51] tRX-Lys-NNN-313 -GCCCGGCUAGCUCAGUC-GGU--UGAGCAUGAGUCUCUUAAUGUCAGGGUUGUGGGUUCGAGCCCCACGAUGGGCGCCA [52] tRNA-Met-CAT-111 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCAUAAUUUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGCCA [53] 5019 .GCCCGGCUAGCUCAGUC-G............................................................ [1,2,3,6,7,8,11,17,18,19,20,24,26,29,30,31,32,33,34,36,37,39,41,43,44,45,47,49,50,51,52] 5020 .GCCCGGCUAGCUCAGUC-GGU--AGAGCAU................................................. [4,5,9,10,12,13,14,15,16,21,22,23,25,27,28,35,36,38,40,42,46,47,48,53] 3012 ...............................................................CCCCACGUUGGGCGCCA [5,8,12,13,26,31,32,45] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 4: 5032,5030,5031 Fragment Coverage tRNA-Gly-TCC-4:A_DSLE tRX-Gly-NNN-66:A_DSLE tRNA-Gly-TCC-2:A_DSLE tRNA-Gly-TCC-3:A_DSL Fragment Aminos Gly Fragment Mismatches U:19:G:1 Fragment Alignment # STOCKHOLM 1.0 tRX-Gly-NNN-66 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCGCCCAACGCACCA [1] tRNA-Gly-TCC-2 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCGGCCAACGCACCA [2] tRNA-Gly-TCC-3 -GCGUUGGUGGUAUAGU--GGUU-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCGGCCAACGCACCA [3] tRNA-Gly-TCC-4 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUUGAUUCCCGGCCAACGCACCA [4] 5032 .GCGUUGGUGGUAUAGU--GU........................................................... [1,2,3,4] 5031 .GCGUUGGUGGUAUAGU--GGU.......................................................... [1,2,3,4] 5030 .GCGUUGGUGGUAUAGU--GGUG-AGCAUA.................................................. [1,2,4] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 5: 5002 Fragment Coverage tRNA-Leu-TAA-8:A_DSLE tRNA-Leu-TAA-9:A_DSLE tRNA-Leu-TAA-1:A_DSLE tRNA-Leu-TAA-2:A_DSLE tRNA-Leu-TAA-3:A_DSLE tRNA-Leu-TAA-4:A_DSLE tRNA-Leu-TAA-6:A_DSLE tRNA-Leu-TAA-19:A_DSLE tRNA-Leu-TAA-12:A_DSLE tRNA-Leu-TAA-10:A_DSLE tRNA-Leu-TAA-11:A_DSLE tRNA-Leu-TAA-17:A_DSLE tRNA-Leu-TAA-14:A_DSLE tRNA-Leu-TAA-15:A_DSLE tRNA-Leu-TAA-22:A_DSLE Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-TAA-1 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-G-CGUGGGUUCGAACCCCACUCCUGGUACCA [1] tRNA-Leu-TAA-2 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-U-CGUGGGUUCGAACCCCACUCCUGGUACCA [2] tRNA-Leu-TAA-3 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-U-CGUGGGUUCGAACCCCACUCCUGGUACCA [3] tRNA-Leu-TAA-4 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-U-CGUGGGUUCAAACCCCACUCCUGGUACCA [4] tRNA-Leu-TAA-6 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-U-CGUGGGUUCGAACCCCACUCCUGGUACCA [5] tRNA-Leu-TAA-8 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-U-CGUGGGUUCAAACCCCACUCCUGGUACCA [6] tRNA-Leu-TAA-9 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-U-CGUGGGUUUGAACCCCACUCCUGGUACCA [7] tRNA-Leu-TAA-10 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-U-CGUGGGUUCAAACCCCACUCCUGGUACCA [8] tRNA-Leu-TAA-11 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-C-CGUGGGUUCGAACCCCACUCCUGGUACCA [9] tRNA-Leu-TAA-12 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-U-CGUGGGUUCAAACCCCACUCCUGGUACCA [10] tRNA-Leu-TAA-14 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-U-CGUGGGUUCAAGCCCCACUCCUGGUACCA [11] tRNA-Leu-TAA-15 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-U-CGUGGGUUCAAGCCCCACUCCUGGUACCA [12] tRNA-Leu-TAA-17 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-U-CGUGGGUUCAAACCCCACUCCUGGUACCA [13] tRNA-Leu-TAA-19 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-U-CGUGGGUUCGUACCCCACUCCUGGUACCA [14] tRNA-Leu-TAA-22 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-U-CGUGGGUUCAAACCCCACUCCUGGUACCA [15] 5002 .ACCAGGAUGGCCGAGU--GGUU-AAGGC................................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 6: 5003,3007 Fragment Coverage tRNA-iMet-CAT-8:A_DSL tRNA-iMet-CAT-24:A_DSL tRNA-iMet-CAT-23:A_DSL tRNA-iMet-CAT-2:A_DSL tRNA-iMet-CAT-3:A_DSL tRNA-iMet-CAT-5:A_DSL tRNA-iMet-CAT-16:A_DSL tRNA-iMet-CAT-14:A_DSL Fragment Aminos iMet Fragment Alignment # STOCKHOLM 1.0 tRNA-iMet-CAT-2 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCAAAACCAUCCUCUGCUACCA [1] tRNA-iMet-CAT-3 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUUGAUGGAUCGAAACCAUCCUCUGCUACCA [2] tRNA-iMet-CAT-5 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGACGAUGGAUCGAAACCAUCCUCUGCUACCA [3] tRNA-iMet-CAT-8 -AGCAGAGUGGCGCAGC--GGA--AGUGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUACCA [4] tRNA-iMet-CAT-14 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUAGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUACCA [5] tRNA-iMet-CAT-16 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUUGAUGGAUCAAAACCAUCCUCUGCUACCA [6] tRNA-iMet-CAT-23 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCUGAGGUCGAUGGAUCGAAACCAUCCUCUGCUACCA [7] tRNA-iMet-CAT-24 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUUGAAACCAUCCUCUGCUCCCA [8] 5003 .AGCAGAGUGGCGCAGC--GGA--A....................................................... [1,2,3,4,5,6,7,8] 3007 ..............................................................AACCAUCCUCUGCUACCA [1,2,3,4,5,6,7] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 7: 5005 Fragment Coverage tRX-Trp-NNN-2:A_DSL tRNA-Trp-CCA-2:A_DSL tRNA-Trp-CCA-5:A_DSL Fragment Aminos Trp Fragment Mismatches C:3:A:1 A:2:G:1 U:5:C:1 C:6:U:1 Fragment Alignment # STOCKHOLM 1.0 tRNA-Trp-CCA-2 -GACCUC.GUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCACCA [1] tRNA-Trp-CCA-5 -GACCUC.GUGGCGCAAC--GGU--AACGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCACCA [2] tRX-Trp-NNN-2 -GGACCUcGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCAGGUUCACCA [3] 5005 .GACCUC.GUGGCGCAAC--GGU.......................................................... [1,2,3] #=GC SS_cons :((((((.(,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +======.=++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 8: 5006 Fragment Coverage tRNA-Ser-GCT-31:A_DSLE tRNA-Ser-GCT-33:A_DSLE tRNA-Ser-GCT-54:A_DSLE tRNA-Ser-GCT-73:A_DSLE tRNA-Ser-GCT-167:A_DSLE tRNA-Ser-GCT-203:A_DSLE tRNA-Ser-GCT-114:A_DSLE tRNA-Ser-GCT-99:A_DSLE tRNA-Ser-GCT-181:A_DSLE tRNA-Ser-GCT-48:A_DSLE tRNA-Ser-GCT-43:A_DSLE tRNA-Ser-GCT-15:A_DSLE tRNA-Ser-GCT-80:A_DSLE tRNA-Ser-GCT-87:A_DSLE tRNA-Ser-GCT-8:A_DSLE tRNA-Ser-GCT-6:A_DSLE tRNA-Ser-GCT-28:A_DSLE tRNA-Ser-GCT-27:A_DSLE tRNA-Ser-GCT-26:A_DSLE tRNA-Ser-GCT-25:A_DSLE tRNA-Ser-GCT-52:A_DSLE tRNA-Ser-GCT-53:A_DSLE tRNA-Ser-GCT-50:A_DSLE tRNA-Ser-GCT-134:A_DSLE Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-GCT-6 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCAAAUCCCAUCCUCG...U..CGCCA [1] tRNA-Ser-GCT-8 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCG...U..CGCCA [2] tRNA-Ser-GCT-15 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAGUCCCAUCCUCG...U..CGCCA [3] tRNA-Ser-GCT-25 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUUG...U..CGCCA [4] tRNA-Ser-GCT-26 -GACGAGGUGGCCGAGU--GGUU-AAGGCGUUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCG...U..CGCCA [5] tRNA-Ser-GCT-27 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAACCUCG...U..CGCCA [6] tRNA-Ser-GCT-28 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCG...U..CGCCA [7] tRNA-Ser-GCT-31 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CAUGGGUUCGAAUCUCAUCCUCG...U..CGCCA [8] tRNA-Ser-GCT-33 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUUCCAUCCUCG...U..CGCCA [9] tRNA-Ser-GCT-43 -GACGAGGUGGCCGAGU--GGUU-AAGGUGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCG...U..CGCCA [10] tRNA-Ser-GCT-48 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCGUU-G-CGUGGGUUCAAAUCCCAUCCUCG...U..CGCCA [11] tRNA-Ser-GCT-50 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCA...U..CGCCA [12] tRNA-Ser-GCT-52 -GACGAGGUGGCCGAGU--GGUU-AAGGCGUUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUUG...U..CGCCA [13] tRNA-Ser-GCT-53 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUGGAAUCCCAUCCUCG...U..CGCCA [14] tRNA-Ser-GCT-54 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUACCAUCCUCG...U..CGCCA [15] tRNA-Ser-GCT-73 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGuag-cuCACCA [16] tRNA-Ser-GCT-80 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUUGAAUCCCAUCCUUG...U..CGCCA [17] tRNA-Ser-GCT-87 -GACGAGGUGGCCGAGU--GGUU-AAGGCAAUGGACUGCUGAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUUG...U..CGCCA [18] tRNA-Ser-GCT-99 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUAGACUGCUAAUCCAUU-G-CGUGGGUUUGAAUCCCAUCCUCG...U..CGCCA [19] tRNA-Ser-GCT-114 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUUCAUU-G-CAUGGGUUCGAAUCCCAUCCUUA...U..CGCCA [20] tRNA-Ser-GCT-134 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGAACUGCUAAUCCAUU-G-CGUGGGUUCAAAUCCCAUCCGCG...U..CGCCA [21] tRNA-Ser-GCT-167 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAUUCUUAUCCUCG...U..CGCCA [22] tRNA-Ser-GCT-181 -GACGAGGUGGCCGAGU--GGUU-AAGGCGUUGGACUGCUAAUCCAUUGAGCGUGGGUUCGAAUCCCAUCCUUG...U..CGCCA [23] tRNA-Ser-GCT-203 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CAUGGGUUCAAAUCUCAUCGUCA...U..CGCCA [24] 5006 .GACGAGGUGGCCGAGU--GGUU-AAG.......................................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))...)..):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++==========...=..=++++ // Fragment Cluster 9: 5007 Fragment Coverage tRNA-Ser-GCT-216:A_DSL Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-GCT-216 -GACGAGGUGGCCGAGU--GUCU-AAGGCGAUGGACUGCUAAUCCAUU-A-CGUGGGUUCGAUUCCCAUCCUUGUCGCCA [1] 5007 .GACGAGGUGGCCGAGU--GU........................................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 10: 5011 Fragment Coverage tRX-Gly-NNN-369:A_DSLE_CS Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRX-Gly-NNN-369 -GCAUUGGUGGUUCAGU--GGU--AGGAUUCUCGCCUGCCACGUGGGAGA-CCCGGGUCUGAUUCCUGGCCAAUGCACCA [1] 5011 .GCAUUGGUGGUUCAGU--GGU--AGGAUUC................................................. [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 11: 5012 Fragment Coverage tRNA-Gly-GCC-58:A_DSLE_CS Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-GCC-58 -GCAUUGGUGUUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGGGUCCGAUUCCCGGCCAAUGCACCA [1] 5012 .GCAUUGGUGUUUCAGU--GGU--AGAAUUC................................................. [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 12: 5013 Fragment Coverage tRX-Gly-NNN-227:A_DSL Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRX-Gly-NNN-227 -GCAUUUGUGGUUCAGU--GGU--AGAAUUCUCGCCUCCCACGCGGGAGA-CCGGGGUGCGAUUCCCGGCCAAUGCACCA [1] 5013 .GCAUUUGUGGUUCAGU--GGU.......................................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 13: 5017 Fragment Coverage tRNA-Lys-TTT-96:A_DSL tRNA-Lys-TTT-93:A_DSL tRNA-Lys-TTT-154:A_DSL tRNA-Lys-TTT-156:A_DSL tRNA-Lys-TTT-151:A_DSL tRX-Lys-NNN-316:A_DSL tRNA-Lys-TTT-165:A_DSL tRNA-Lys-TTT-42:A_DSL tRNA-Lys-TTT-104:A_DSL tRNA-Lys-TTT-149:A_DSL tRNA-Lys-TTT-140:A_DSL tRX-Lys-NNN-216:A_DSL tRNA-Lys-TTT-135:A_DSL tRNA-Lys-TTT-139:A_DSL tRNA-Lys-TTT-21:A_DSL tRNA-Lys-TTT-64:A_DSL tRNA-Lys-TTT-129:A_DSL tRNA-Lys-TTT-88:A_DSL tRNA-Lys-TTT-34:A_DSL tRNA-Lys-TTT-25:A_DSL tRNA-Lys-TTT-166:A_DSL tRNA-Lys-TTT-163:A_DSL tRNA-Lys-TTT-71:A_DSL tRNA-Lys-TTT-102:A_DSL tRX-Lys-NNN-292:A_DSL Fragment Aminos Lys Fragment Alignment # STOCKHOLM 1.0 tRX-Lys-NNN-216 -GCCCGGAUAGCUCAGUC-GGC--AGAGCAACAGACUUUUAAUCUGAGGGUCCAGGGGUCAAGUCCCUGUUCGGGCGCCA [1] tRX-Lys-NNN-292 -GCCCGGAUAGCUCAGUC-GGU--AGAGAAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUAGGGCGCCA [2] tRX-Lys-NNN-316 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAGUUGAGGGUCCAGGGUUCAAGUUCCUGUUCAGGCGCCA [3] tRNA-Lys-TTT-21 -GCCCGGAUAGCUCAGUC-GGC--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA [4] tRNA-Lys-TTT-25 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCAGGCGCCA [5] tRNA-Lys-TTT-34 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUUUUCGGGCGCCA [6] tRNA-Lys-TTT-42 -GCCCGGAUAGCUCAGUC-GGU--AGAGUAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA [7] tRNA-Lys-TTT-64 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGACGGUCCAGGGUUCAAGUCCCUGUUCGGGUGCCA [8] tRNA-Lys-TTT-71 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUCAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA [9] tRNA-Lys-TTT-88 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUGCGGGCGCCA [10] tRNA-Lys-TTT-93 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGACGGUCCAGGGUUUAAGUCCCUGUUCGGGCGCCA [11] tRNA-Lys-TTT-96 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUAGGGCGCCA [12] tRNA-Lys-TTT-102 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCGGUUCGGGCGCCA [13] tRNA-Lys-TTT-104 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCUAGGGUUCAAGCCCCUAUUCAGGCACCA [14] tRNA-Lys-TTT-129 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUGGGGCGCCA [15] tRNA-Lys-TTT-135 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGGUCCUGUUUGGGCGCCA [16] tRNA-Lys-TTT-139 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGUUUCAAGUCCCUGUUCUGGCGCCA [17] tRNA-Lys-TTT-140 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUAUUCGCGCACCA [18] tRNA-Lys-TTT-149 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGAGUCAAGGGUUCAAGUCCCUGUUCGGGCACCA [19] tRNA-Lys-TTT-151 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGCGUCCAGGGUUCAAGUACCUGUUCGGGCGCCA [20] tRNA-Lys-TTT-154 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGCUUCAAGUCCCUGUUCUGGCGCCA [21] tRNA-Lys-TTT-156 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCAAGGGUUCAAGUCCUUGUUCGGGCGCCA [22] tRNA-Lys-TTT-163 -GCCCGGAUAGCUCAGUC-GGUG--GAGCAUCAGACUUUUAAUCUGAGGGUCCAGGAUUCAAGUCCCUGUUCGGGCGCCA [23] tRNA-Lys-TTT-165 -GCCCGGAUAGCUCAGUC-GGU--AGAGAAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA [24] tRNA-Lys-TTT-166 -GCCCGGAUAGCUCAGUC-GCU--GGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA [25] 5017 .GCCCGGAUAGCUCAGUC-G............................................................ [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 14: 5018 Fragment Coverage tRNA-SeC-TCA-1:A_DSL Fragment Aminos SeC Fragment Alignment # STOCKHOLM 1.0 tRNA-SeC-TCA-1 -GCCCGGAUgAaCCUCGGU--GGUC-CGGGGUGCAGGCUUCAAACCUGUA-A-GAGUGGUUCAAUUCCACcUUUCGGGCGCCA [1] 5018 .GCCCGGAUGAACCUCGGU--GGU........................................................... [1] #=GC SS_cons :(((((((,.,.<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>.>))))))):::: #=GC RF +=======+.+.====+++++++++++====+=====++***++=====+++++=====+++++++====.========++++ // Fragment Cluster 15: 5021 Fragment Coverage tRNA-Phe-GAA-51:A_DSLE tRNA-Phe-GAA-26:A_DSLE tRNA-Phe-GAA-20:A_DSLE tRX-Phe-NNN-25:A_DSLE tRNA-Phe-GAA-4:A_DSLE tRNA-Phe-GAA-5:A_DSLE tRNA-Phe-GAA-6:A_DSLE tRNA-Phe-GAA-7:A_DSLE tRNA-Phe-GAA-1:A_DSLE tRNA-Phe-GAA-3:A_DSLE tRNA-Phe-GAA-8:A_DSLE tRNA-Phe-GAA-9:A_DSLE tRX-Phe-NNN-1:A_DSLE tRNA-Phe-GAA-2:A_DSLE tRNA-Leu-CAA-80:A_DSLE tRNA-Phe-GAA-19:A_DSLE tRNA-Phe-GAA-16:A_DSLE tRNA-Phe-GAA-17:A_DSLE tRNA-Phe-GAA-15:A_DSLE tRNA-Leu-TAA-28:A_DSLE Fragment Aminos Leu,Phe Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-CAA-80 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUCAAGAUGUAAAGGUCCCUGGUUCCAUCCAGGGUUUUGGCACCA [1] tRNA-Leu-TAA-28 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUUAAGAUCUAAAGGUACCUGGUUCGAUCCCAGGUUUUGGCACCA [2] tRNA-Phe-GAA-1 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCACCA [3] tRNA-Phe-GAA-2 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUCGGCACCA [4] tRNA-Phe-GAA-3 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCAGGUUUCGGCACCA [5] tRNA-Phe-GAA-4 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUUGGCACCA [6] tRNA-Phe-GAA-5 -GCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCACCA [7] tRNA-Phe-GAA-6 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCUGGGUUUCGGCACCA [8] tRNA-Phe-GAA-7 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCUGGUUUCGGCACCA [9] tRNA-Phe-GAA-8 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCUGGGUUUCGGCACCA [10] tRNA-Phe-GAA-9 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUACCUGGUUCGAUCCCAGGUUUCGGCACCA [11] tRNA-Phe-GAA-15 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACAGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCACCA [12] tRNA-Phe-GAA-16 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUUCCUGGUUCGAUCCCAGGUUUUGGCACCA [13] tRNA-Phe-GAA-17 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUGCCGGGUUUCGGCACCA [14] tRNA-Phe-GAA-19 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAAACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCUGGGUUUCGGCACCA [15] tRNA-Phe-GAA-20 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGAUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUCGGCACCA [16] tRNA-Phe-GAA-26 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGUUCCCUGGUUUGAUCCUGGGUUUCGGCACCA [17] tRNA-Phe-GAA-51 -GCCGAAAUAGCUCAGUU-GGG--AGAGCUUUAGACUGAAGAUCUAAAGCUCCCAGGUUCAAUCCAAGGUUUCGGCACCA [18] tRX-Phe-NNN-1 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUGUAAAGGUCCCUGGUUCGAUCCUGGGUUUCGGCACCA [19] tRX-Phe-NNN-25 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGAUCCCUGGUUCGAU-UUGGGUUUUGGCACCA [20] 5021 .GCCGAAAUAGCUCAGUU-GGG--AGAGC................................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 16: 5023 Fragment Coverage tRNA-His-GTG-14:A_DSLE_CS tRNA-His-GTG-46:A_DSLE_CS tRNA-His-GTG-37:A_DSLE_CS tRNA-His-GTG-21:A_DSLE_CS tRNA-His-GTG-28:A_DSLE_CS tRNA-His-ATG-1:A_DSLE_CS tRX-His-NNN-43:A_DSLE_CS tRX-His-NNN-36:A_DSLE_CS tRNA-His-GTG-57:A_DSLE_CS tRX-His-NNN-93:A_DSLE_CS tRNA-Asn-GTT-290:A_DSLE_CS tRNA-His-GTG-2:A_DSLE_CS tRX-His-NNN-25:A_DSLE_CS tRNA-His-GTG-55:A_DSLE_CS tRNA-His-GTG-52:A_DSLE_CS Fragment Aminos His,Asn Fragment Alignment # STOCKHOLM 1.0 tRNA-Asn-GTT-290 -GCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUUGCCGCAGCAA-CCCCGGUUCGAAUCCGG.GUCAAGGCACCA [1] tRNA-His-ATG-1 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUAUGGCCGCAGCAA-CCCCGGUUCGAAUCCGG.GUCACGGCACCA [2] tRNA-His-GTG-2 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCCCGGUUCGAAUCCGG.GUCACGGCACCA [3] tRNA-His-GTG-14 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCCCGGUUCGAAUCCGGgGUCACGGCACCA [4] tRNA-His-GTG-21 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCCCGGUUCGAAUCCGG.GUCACGACACCA [5] tRNA-His-GTG-28 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CUCCGGUUCGAAUCCGG.GUCACGGCACCA [6] tRNA-His-GTG-37 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCCCCGUUCGAAUCCGG.GUCACGGCACCA [7] tRNA-His-GTG-46 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCCCGGUUCGAAUCCGC.GUCACGGCACCA [8] tRNA-His-GTG-52 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCCCGGUUCGAAUCCGG.GUUAUGGCACCA [9] tRNA-His-GTG-55 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCUCGGUUUGAAUCCGG.GUCACGGCACCA [10] tRNA-His-GTG-57 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCUGCAGCAA-CCCCGGUUUGAAUCCGG.GUCACGGCACCA [11] tRX-His-NNN-25 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCUCAGCAA-CCCCGGUUCGAAUCCGG.GUUACGGCACCA [12] tRX-His-NNN-36 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCCCGAUUCGAAUCCGG.GUUACGGCACCA [13] tRX-His-NNN-43 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCCUGGUUCGAAUCCGA.GUCACGGCACCA [14] tRX-His-NNN-93 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGUGUUGUGGCCGCAGCAA-CCCAGGUUCGAAUCCGG.GUUAUGGCACCA [15] 5023 .GCCGUGAUCGUAUAGU--GGUU-AGUACUC.................................................. [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>.>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++====.========++++ // Fragment Cluster 17: 3005,5024 Fragment Coverage tRNA-Met-CAT-4:A_DSL Fragment Aminos Met Fragment Alignment # STOCKHOLM 1.0 tRNA-Met-CAT-4 -GCCUCGUUAGCGCAGUA-GGU--AGCGCGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAUCCUCACACGGGGCACCA [1] 5024 .GCCUCGUUAGCGCAGUA-GGU--A....................................................... [1] 3005 ...............................................................CCUCACACGGGGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 18: 5025 Fragment Coverage tRNA-Met-CAT-89:A_DSL tRNA-Met-CAT-72:A_DSL tRX-Met-NNN-15:A_DSL tRNA-Thr-CGT-12:A_DSL tRNA-Met-CAT-46:A_DSL tRNA-Met-CAT-42:A_DSL tRNA-Met-CAT-40:A_DSL tRNA-Met-CAT-48:A_DSL tRNA-Met-CAT-36:A_DSL tRNA-Met-CAT-35:A_DSL tRNA-Met-CAT-92:A_DSL tRNA-Met-CAT-96:A_DSL tRNA-Met-CAT-104:A_DSL tRNA-Lys-CTT-232:A_DSL tRNA-Met-CAT-55:A_DSL tRNA-Met-CAT-60:A_DSL tRNA-Met-CAT-62:A_DSL tRX-Met-NNN-1:A_DSL tRNA-Val-CAC-78:A_DSL tRNA-Met-CAT-22:A_DSL tRNA-Met-CAT-29:A_DSL tRNA-Met-CAT-28:A_DSL tRX-Met-NNN-22:A_DSL tRNA-Met-CAT-5:A_DSL Fragment Aminos Met,Thr,Val,Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Lys-CTT-232 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCUUAAUCUGAAGGUCGUGAGUUCGAGCCUCACACAGGGCACCA [1] tRNA-Met-CAT-5 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAACCUCACACGGGGCACCA [2] tRNA-Met-CAT-22 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAGCCUCACAAGGGGCACCA [3] tRNA-Met-CAT-28 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUGUCAUAAUCUGAAGGUCGUGAGUUCGAGCCUCACACGGGGCACCA [4] tRNA-Met-CAT-29 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAAUCUGAUGGUCGUGAGUUCGAGCCUCACACGGGGCACCA [5] tRNA-Met-CAT-35 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAAUCUGAAGGUCGCGAGUUCGAGCCUCACACGGGGCACCA [6] tRNA-Met-CAT-36 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAGCCUCACACGGAGCACCA [7] tRNA-Met-CAT-40 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAAUCUAAAGGUCGUGAGUUCGAGCCUCACACGGGGCACCA [8] tRNA-Met-CAT-42 -GCCUCGUUGGCGCAGUA-GGC--AGCACGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAGCCUCACACGGGGCACCA [9] tRNA-Met-CAT-46 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAAUCUGAAGGUCGAGAGUUCGAGCCUCACACGGGGCACCA [10] tRNA-Met-CAT-48 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAAUCUGAAAGUCGUGAGUUCGAAACUCACACGGGGCACCA [11] tRNA-Met-CAT-55 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAGCCUCACCCGGGGCACCA [12] tRNA-Met-CAT-60 -GCCUCGUUGGCGCAGUA-GGC--AGUGUGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAGCCUCACACGGGGCACCA [13] tRNA-Met-CAT-62 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAAUCUGAAGGUUGUGAGUUUGAGUCUCACACGGGGCACCA [14] tRNA-Met-CAT-72 -GCCUCGUUGGCGCAGUA-GGC--AGCGCAUCAGUCUCAUAAUCUGAAAGUUGUGAGUUCGAGCCUCACACGGGGCACCA [15] tRNA-Met-CAT-89 -GCCUCGUUGGCGCAGUA-GGC--AGCGUGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUUGAACCUCACACGGGGUACCA [16] tRNA-Met-CAT-92 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAGCCUCUCAUGGGGCACCA [17] tRNA-Met-CAT-96 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAAUCUGAAGGUCGUAAGUUCGAGCCUCACACGGGGUACCA [18] tRNA-Met-CAT-104 -GCCUCGUUGGCGCAGUA-GGC--AGCGCAUCAGUCUCAUAAUCUAAAGGUCGUGAGUUCGAGCCUCACAUGAGGCACCA [19] tRX-Met-NNN-1 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAGCCUCACGCGGAGCACCA [20] tRX-Met-NNN-15 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAGUCGGAAGGUCGUGAGUUUGAGCCUCACACGGGGCACCA [21] tRX-Met-NNN-22 -GCCUCGUUGGCGCAGUA-GGC--AGUGCGCCAGUCUCAUAAUCUGAAGGUCGUGAGUUCGAGCCUCACACAGGGCACCA [22] tRNA-Thr-CGT-12 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCGUAAUCUGAAGGUCGUGAGUUUGAGCCUCACACGGGGCACCA [23] tRNA-Val-CAC-78 -GCCUCGUUGGCGCAGUA-GGC--AGCGCGUCAGUCUCACAAUCUGAAGGUCGUGAGUUCGAGCCUCACACGGGGCACCA [24] 5025 .GCCUCGUUGGCGCAGUA-GG........................................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 19: 5027,5026 Fragment Coverage tRNA-Lys-TTT-150:A_DSLE_CS tRNA-Lys-TTT-153:A_DSLE_CS tRNA-Ile-TAT-33:A_DSLE_CS tRNA-Lys-TTT-40:A_DSLE_CS tRNA-Arg-TCT-38:A_DSLE_CS tRNA-Lys-TTT-107:A_DSLE_CS tRNA-Lys-TTT-106:A_DSLE_CS tRNA-Lys-TTT-5:A_DSLE_CS tRNA-Lys-TTT-9:A_DSLE_CS tRNA-Lys-TTT-12:A_DSLE_CS tRNA-Lys-TTT-56:A_DSLE_CS tRNA-Lys-TTT-59:A_DSLE_CS tRX-Lys-NNN-274:A_DSLE_CS tRX-Lys-NNN-164:A_DSLE_CS tRX-Lys-NNN-237:A_DSLE_CS tRNA-Lys-TTT-35:A_DSLE_CS tRNA-Lys-TTT-26:A_DSLE_CS tRX-Lys-NNN-121:A_DSLE_CS tRNA-Lys-TTT-16:A_DSLE_CS tRX-Lys-NNN-39:A_DSLE_CS tRNA-Lys-TTT-76:A_DSLE_CS Fragment Aminos Arg,Ile,Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-TCT-38 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUCUAAUCUGAGGGUCCAGGGUUCAAGUCACUGUUCGGGCGCCA [1] tRNA-Ile-TAT-33 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUAUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUAGGGCGCCA [2] tRX-Lys-NNN-39 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGCCUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUUGGGUGCCA [3] tRX-Lys-NNN-121 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCACGCUUUUAAUGUGAGGGUCCAGGGUUCAAGUCCCUGUUUGGGCGCCA [4] tRX-Lys-NNN-164 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCACACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUACGGGCGCCA [5] tRX-Lys-NNN-237 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUGUCAGGGUCGUGGGUUCGAGCCCCUCGUUCGGCGCCA [6] tRX-Lys-NNN-274 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAACUGAGGGUCCAGGGUUCAAGUCCCUGUUGGGGUGCCA [7] tRNA-Lys-TTT-5 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUUGGGCGCCA [8] tRNA-Lys-TTT-9 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA [9] tRNA-Lys-TTT-12 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCUCCA [10] tRNA-Lys-TTT-16 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUUCAGGGUUCAAGUCCCUGUUCGGGCGCCA [11] tRNA-Lys-TTT-26 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGUGCCA [12] tRNA-Lys-TTT-35 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGAGUUCAAGUCCCUGUUCGGGCGCCA [13] tRNA-Lys-TTT-40 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUUAAGUCCCUGUUCGGGCGCCA [14] tRNA-Lys-TTT-56 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUUUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA [15] tRNA-Lys-TTT-59 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGUGUUCAAGUCCCUGUUCGGGCGCCA [16] tRNA-Lys-TTT-76 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAAGGUUCAAGUCCCUGUUUGGGCGCCA [17] tRNA-Lys-TTT-106 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCACACUUUUAAUGUGAGGGUCCAGGGUUCAAGUCCCUGUUUGGGCGCCA [18] tRNA-Lys-TTT-107 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUAGGGCGCCA [19] tRNA-Lys-TTT-150 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUGCCCGUUCGGGCGCCA [20] tRNA-Lys-TTT-153 -GCCUGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUAAGGGUCCAGGGUUCAAGGCCCUGUUCGGGCGCCA [21] 5027 .GCCUGGAUAGCUCAGUC-GGU.......................................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21] 5026 .GCCUGGAUAGCUCAGUC-GGU--AGAGCAU................................................. [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 20: 5029 Fragment Coverage tRNA-Gly-CCC-20:A_DSLE_CS Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-CCC-20 -GCGCCGCUGGUGUAGU--GGU--AUCAUGCAAGAUUCCCAUUCUUGCGA-CCCGGGUUCGAUUCCCGGGCGGCGCACCA [1] 5029 .GCGCCGCUGGUGUAGU--GGU--AUCAUGCA................................................ [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 21: 5033 Fragment Coverage tRNA-Ser-TGA-19:A_DSLE Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-TGA-19 -GCUGCGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUGAAAUCCAAU-G-CGCAGGUUCGAACCCUGCUCGCAGCGCCA [1] 5033 .GCUGCGAUGGCCGAGU--GGUU-AA...................................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 22: 5034 Fragment Coverage tRNA-Ile-AAT-2:A_DSL tRNA-Ile-AAT-1:A_DSL Fragment Aminos Ile Fragment Alignment # STOCKHOLM 1.0 tRNA-Ile-AAT-1 -GGCCGGUUAGCUCAGUU-GGUU-AGAGCGUGGUGCUAAUAACGCCAAGGUCGCGGGUUCGAUCCCCGUACUGGCCACCA [1] tRNA-Ile-AAT-2 -GGCCGGUUAGCUCAGUU-GGUU-AGAGCGUGGUGCUAAUAACGCCAAGGUCGCGGGUUCGAUCCCCGUACGGGCCACCA [2] 5034 .GGCCGGUUAGCUCAGUU-G............................................................ [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 23: 5035 Fragment Coverage tRNA-Thr-TGT-8:A_DSLE tRNA-Thr-TGT-3:A_DSLE tRNA-Thr-TGT-7:A_DSLE tRX-Thr-NNN-59:A_DSLE tRX-Thr-NNN-107:A_DSLE tRNA-Thr-TGT-10:A_DSLE Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRX-Thr-NNN-59 -GGCUCCAUAGCUCAGU--GGUU-AGAGCACUGGUCUUGUAAACCAGGGGUCGCGAGUUCGAUCCUUGCUGGGGCCUCCA [1] tRX-Thr-NNN-107 -GGCUCCAUAGCUCAGU--GGUU-AGAGCACUGGUCUUGUAAACCACGGGUCGUGAGUUCGAUCCUCGCUGGGGCCUCCA [2] tRNA-Thr-TGT-3 -GGCUCCAUAGCUCAGU--GGUU-AGAGCACUGGUCUUGUAAACCAGGGGUCGCGAGUUCAAUUCUCGCUGGAGCCUCCA [3] tRNA-Thr-TGT-7 -GGCUCCAUAGCUCAGU--GGUU-AGAGCACUGGUCUUGUAAACCAGGGGUCGCGAGUUCAAUUCUCGCUGGGGCCUCCA [4] tRNA-Thr-TGT-8 -GGCUCCAUAGCUCAGU--GGUU-AGAGCACUGGUCUUGUAAACCAGGGGUCGCGAGUUCGAUCCUCGCUGGGGCCUCCA [5] tRNA-Thr-TGT-10 -GGCUCCAUAGCUCAGU--GGUU-AGAGCACUGGUCUUGUAAACCAGGGGUCGUGAGUUCAAUCCUCACUGGGGCCUCCA [6] 5035 .GGCUCCAUAGCUCAGU--GGUU-AGAGCA.................................................. [1,2,3,4,5,6] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 24: 5036,3011 Fragment Coverage tRNA-Pro-CGG-8:A_DSLE_CS tRNA-Pro-AGG-90:A_DSLE_CS tRNA-Pro-CGG-24:A_DSLE_CS tRNA-Thr-AGT-33:A_DSLE_CS tRNA-Pro-TGG-3:A_DSLE_CS tRNA-Pro-AGG-27:A_DSLE_CS tRNA-Pro-TGG-36:A_DSLE_CS tRNA-Pro-AGG-7:A_DSLE_CS tRNA-Leu-CAG-135:A_DSLE_CS tRNA-Pro-CGG-40:A_DSLE_CS tRNA-Pro-AGG-36:A_DSLE_CS tRNA-Pro-TGG-13:A_DSLE_CS tRNA-Pro-AGG-91:A_DSLE_CS tRNA-Pro-AGG-71:A_DSLE_CS tRNA-Pro-CGG-17:A_DSLE_CS Fragment Aminos Pro,Thr,Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-CAG-135 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUCAGGUGUGAGAGGUCCUGAGUUCAAAUCCCAGACGAGCCCCCA [1] tRNA-Pro-AGG-7 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [2] tRNA-Pro-AGG-27 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCAGGAUGAGCCCCCA [3] tRNA-Pro-AGG-36 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCACAUCCCGGACGAGCCCCCA [4] tRNA-Pro-AGG-71 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCAGACGAGCUCCCA [5] tRNA-Pro-AGG-90 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGCGAGAGGUCCAGGGUUCAAAUCCCGCACGAGCCCCCA [6] tRNA-Pro-AGG-91 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGCAAGAGGUCCCGGGUUCAAAUACCGGACGAGCCCCCA [7] tRNA-Pro-CGG-8 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [8] tRNA-Pro-CGG-17 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGCUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [9] tRNA-Pro-CGG-24 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGUUUCAAAUCCCGGAUGAGCCCCCA [10] tRNA-Pro-CGG-40 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUCGGGUGUGAGAGGUCCCGUGUUCAAAUCCCGGACGAGCCCCCA [11] tRNA-Pro-TGG-3 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [12] tRNA-Pro-TGG-13 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUAAAAUCCCGGACGAGCCCCCA [13] tRNA-Pro-TGG-36 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGUUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [14] tRNA-Thr-AGT-33 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGUGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [15] 5036 .GGCUCGUUGGUCUAGG--GGU--AUGAUUC................................................. [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15] 3011 ..............................................................AUCCCGGACGAGCCCCCA [2,4,8,9,12,14] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 25: 5038 Fragment Coverage tRX-Ala-NNN-34:A_DSL tRX-Ala-NNN-21:A_DSL tRX-Ala-NNN-22:A_DSL tRX-Ala-NNN-11:A_DSL tRX-Ala-NNN-12:A_DSL tRX-Ala-NNN-14:A_DSL Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRX-Ala-NNN-11 -GGGGAAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACCA [1] tRX-Ala-NNN-12 -GGGGAAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCAAUGCCCGCAUUCUCCACCA [2] tRX-Ala-NNN-14 -GGGGAAUUAGCUCAAAU-GGU--AGAGCACUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACCA [3] tRX-Ala-NNN-21 -GGGGAAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCUGCAUUCUCCACCA [4] tRX-Ala-NNN-22 -GGGGAAUUAGCUCAAAU-GGU--AGAGCGCUUGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACCA [5] tRX-Ala-NNN-34 -GGGGAAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCUAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACCA [6] 5038 .GGGGAAUUAGCUCAAAU-GGU.......................................................... [1,2,3,4,5,6] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 26: 5039 Fragment Coverage tRX-Ala-NNN-26:A_DSL tRX-Ala-NNN-3:A_DSL tRX-Ala-NNN-18:A_DSL Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRX-Ala-NNN-3 -GGGGAAUUAGCUCAAGU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACCA [1] tRX-Ala-NNN-18 -GGGGAAUUAGCUCAAGU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUUGAUGCCCGCAUUCUCCACCA [2] tRX-Ala-NNN-26 -GGGGAAUUAGCUCAAGU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGUUGCCCGCAUUCUCCACCA [3] 5039 .GGGGAAUUAGCUCAAGU-GGU.......................................................... [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 27: 5040 Fragment Coverage tRNA-Ala-AGC-3:A_DSL Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-AGC-3 -GGGGAAUUAGCUCAGAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACCA [1] 5040 .GGGGAAUUAGCUCAGAU-G............................................................ [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 28: 5042 Fragment Coverage tRNA-Ala-CGC-1:A_DSL tRNA-Ala-CGC-3:A_DSL tRNA-Ala-CGC-4:A_DSL tRNA-Ala-TGC-38:A_DSL tRNA-Ala-TGC-33:A_DSL tRNA-Ala-TGC-35:A_DSL tRNA-Ala-TGC-12:A_DSL tRNA-Ala-TGC-14:A_DSL tRNA-Ala-TGC-18:A_DSL tRNA-Ala-TGC-19:A_DSL tRNA-Ala-TGC-4:A_DSL tRNA-Ala-TGC-5:A_DSL tRX-Ala-NNN-6:A_DSL tRX-Ala-NNN-8:A_DSL tRNA-Ala-TGC-28:A_DSL tRNA-Ala-TGC-27:A_DSL tRNA-Ala-TGC-22:A_DSL Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-CGC-1 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUCGCAUGUAUGAGGUCCUGGGUUCAAUCCCCAGCAUCUCCACCA [1] tRNA-Ala-CGC-3 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUCGCAUGUAUGAGGCCCUGGGUUCAAUCCCCAGCAUCUCCACCA [2] tRNA-Ala-CGC-4 -GGGGAUGUAGCUCAGU--GGU--AAAGCGCAUGCUUCGCAUGUAUGAGGUCCUGGGUUCAAUCCCCAGCAUCUCCACCA [3] tRX-Ala-NNN-6 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGGAUGAGGUCCUGGGUUCAAUCCUCAGCAUCUCCACCA [4] tRX-Ala-NNN-8 -GGGGAUGUAGCUCAGU--GGU--AAAGCACAUGCUUUGCAUGUAUGAGGUCAUGGGUUCAAUCCCCAGCAUCUCCUCCA [5] tRNA-Ala-TGC-4 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGCCCCGGGUUCAAUCCCCGGCAUCUCCACCA [6] tRNA-Ala-TGC-5 -GGGGAUGUAGCUCAGU--GGU--AGAGCACAUGCUUUGCAUGUAUGAGGUCCUGGGUUCAAUCCCCAGCAUCUCCACCA [7] tRNA-Ala-TGC-12 -GGGGAUGUAGCUCAGU--GGU--AAAGCGCAUGCUUUGCAUGUAUGAGGUCCUGGGUUCAAUCCCCAGCAUCUCCACCA [8] tRNA-Ala-TGC-14 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUGUGAGGUCCUGGGUUCAAUCCCCAGCAUCUCCACCA [9] tRNA-Ala-TGC-18 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUACGAGGUCCUGGGUUCAAUCCCCAGCAUCUCCACCA [10] tRNA-Ala-TGC-19 -GGGGAUGUAGCUCAGU--GGU--AGAGCACAUGCUUUGCAUGUAUGAGGUCCUGGGUUCAAUUCCCAGUAUCUCCACCA [11] tRNA-Ala-TGC-22 -GGGGAUGUAGCUCAGU--GGU--AGAGCACAUGCUUUGCAUGUAUGAGGUCUUGGGUUCAAUUCCCAGCAUCUCCACCA [12] tRNA-Ala-TGC-27 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUAUAUGAGGUCCUGGGUUCAAUCCCCAGCAUCUCCACCA [13] tRNA-Ala-TGC-28 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCUUGCUUUGCAUGUAUGAGGUUCUGGGUUCAAUCCCCAGCAUCUCCACCA [14] tRNA-Ala-TGC-33 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUGCUGGGUUCAAUCCCCAGUAUCUCCACCA [15] tRNA-Ala-TGC-35 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUUUAUGAGGUCCUGGGUUCAAUCCCCAGCAUCUCCACCA [16] tRNA-Ala-TGC-38 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCAUUGCAUGUAUGAGGUCUUGGGUUCAAUCCCCAGCAUCUCCACCA [17] 5042 .GGGGAUGUAGCUCAGU--GG........................................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 29: 5043 Fragment Coverage tRX-Ala-NNN-10:A_DSL Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRX-Ala-NNN-10 -GGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCACCA [1] 5043 .GGGGGAUUAGCUCAAAU-GGU--A....................................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 30: 5048 Fragment Coverage tRX-Leu-NNN-33:A_DSL tRNA-Leu-AAG-46:A_DSL tRNA-Leu-AAG-99:A_DSL tRNA-Leu-AAG-30:A_DSL tRX-Leu-NNN-69:A_DSL tRNA-Leu-AAG-112:A_DSL tRNA-Leu-AAG-78:A_DSL tRNA-Leu-AAG-92:A_DSL tRX-Leu-NNN-51:A_DSL tRNA-Leu-AAG-5:A_DSL tRNA-Leu-AAG-23:A_DSL tRNA-Leu-AAG-31:A_DSL tRNA-Leu-TAG-76:A_DSL tRNA-Leu-TAG-74:A_DSL tRNA-Leu-AAG-16:A_DSL tRNA-Leu-AAG-14:A_DSL tRNA-Leu-AAG-19:A_DSL tRNA-Leu-AAG-62:A_DSL tRNA-Leu-AAG-60:A_DSL tRNA-Leu-AAG-67:A_DSL tRNA-Leu-AAG-65:A_DSL tRNA-Leu-AAG-88:A_DSL tRNA-Leu-AAG-86:A_DSL tRNA-Leu-AAG-83:A_DSL tRX-Leu-NNN-41:A_DSL tRNA-Leu-AAG-54:A_DSL tRNA-Leu-TAG-45:A_DSL tRX-Leu-NNN-19:A_DSL tRNA-Leu-AAG-59:A_DSL tRNA-Leu-AAG-52:A_DSL tRNA-Leu-AAG-36:A_DSL tRNA-Leu-TAG-9:A_DSL tRNA-Leu-TAG-2:A_DSL Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-AAG-5 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU---CGUGGGUUCGAAUCCCA.CCGCU..GCCACCA [1] tRNA-Leu-AAG-14 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-GCCGUGGGUUCGAAUCCCA.CCGCU..GCCACCA [2] tRNA-Leu-AAG-16 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-UGUGGGUUCGAAUCCCA.CCGCU..GCCACCA [3] tRNA-Leu-AAG-19 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUUGAAUCCCA.CCGCU..ACCACCA [4] tRNA-Leu-AAG-23 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCGAAUCCCA.CUGCU..GCCACCA [5] tRNA-Leu-AAG-30 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CAUGGGUUCGAAUCCCA.CCGCU..GCCACCA [6] tRNA-Leu-AAG-31 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCAAAUCCCA.CCGCU..GCCACCA [7] tRNA-Leu-AAG-36 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-GGCGUGGGUUCGAAUCCCA.CCGCU..GCCACCA [8] tRNA-Leu-AAG-46 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGUAG-CGUGGGUUCGAAUCCCA.CCGCU..GCCACCA [9] tRNA-Leu-AAG-52 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCGAAUCCCA.CGGCU..GCCACCA [10] tRNA-Leu-AAG-54 -GGUAGCGUGGCCGAGC--GGUCUAAGGUGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCGAAUCCCA.CUGCU..GCCACCA [11] tRNA-Leu-AAG-59 -GGUAGCGUGGCCGAGC--GGUCUAAGGUGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCGAAUCUCA.CCGCU..GCCACCA [12] tRNA-Leu-AAG-60 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCGAAUCCCA.CUGCU..GCUACCA [13] tRNA-Leu-AAG-62 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAAUAAGGCUCCAGU-G-CGUGGGUUCGAAUCCCA.CUGCU..GCCACCA [14] tRNA-Leu-AAG-65 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCGAAUCCCA.CCGUU..GCCACCA [15] tRNA-Leu-AAG-67 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-UGUGGAUUCGAAUCCCA.CCGCU..GCCACCA [16] tRNA-Leu-AAG-78 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGAUUGAAUCCCA.CCGCU..GCCACCA [17] tRNA-Leu-AAG-83 -GGUAGCGUGGCCGAGC--GGUCUAAGGUGCUAGAUUAAGGCUCCAGU-G-CGUGGGUUCGAAUCCCA.CCGCU..GCCACCA [18] tRNA-Leu-AAG-86 -GGUAGCGUGGCCGAGC--GGUCUAAGGUGCUGGGUUAAGGCUCCAGU-G-UGUGGGUUCGAAUCCCA.CCGCU..GCCACCA [19] tRNA-Leu-AAG-88 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUUCAGU-G-CGUGGGUUCGAAACCCA.CCGCU..GCCACCA [20] tRNA-Leu-AAG-92 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-GUUGGGUUCGAAUCCCA.CCGCU..GCCACCA [21] tRNA-Leu-AAG-99 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUAGAAUCCCA.CUGCU..GCCACCA [22] tRNA-Leu-AAG-112 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCGAAUCCCAuCUGCU..GCCACCA [23] tRX-Leu-NNN-19 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAAUAAGGCUCCA-CUG-CGUGGGUUCGAAUCCCA.CCGCU..GCCACCA [24] tRX-Leu-NNN-33 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGCAUUAAGGCUCCAGU---CAUGGGUUCGAAUCCCA.CCGCU..GCCACCA [25] tRX-Leu-NNN-41 -GGUAGCGUGGCCGAGC--GGUCUAAGGUGCUGGAUUAAGGCUCCAGU-G-UGUGGGUUCGAAUUCCA.CUGCU..GCCACCA [26] tRX-Leu-NNN-51 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAAUAAGGCUCCAGU-G-CGUGGGUUCGAAUCCCA.CCGCUucACUACCA [27] tRX-Leu-NNN-69 -GGUAGCGUGGCCGAGC--GGUCUAAGGUGCUGGAUUAAGGCUCCAGU-G-CAUGGGUUCGAAUCCCA.UCCUU..GCCACCA [28] tRNA-Leu-TAG-2 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUUAGGCUCCAGU-G-CGUGGGUUCGAAUCCCA.CCGCU..GCCACCA [29] tRNA-Leu-TAG-9 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUUAGGCUCCAGU-G-CGUGGGUUCGAAUCCCA.UCGCU..GCCACCA [30] tRNA-Leu-TAG-45 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUUAGGCUCCAGU-G-CGUGGGUUCGCAUCCCA.UCGCU..GCCACCA [31] tRNA-Leu-TAG-74 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUUAGGCUCCAGU-G-CGUGGGUUUGAAUCCCA.CAGCU..GCCACCA [32] tRNA-Leu-TAG-76 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUUAGGCUCCAGU-G-CGUGGGUUCGCAUCCCA.UCGCU..GCCGCCA [33] 5048 .GGUAGCGUGGCCGAGC--GG.............................................................. [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>.>))))..))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++====.=====..===++++ // Fragment Cluster 31: 5050 Fragment Coverage tRNA-Leu-AAG-101:A_DSL tRX-Leu-NNN-125:A_DSL tRX-Leu-NNN-95:A_DSL tRNA-Leu-AAG-38:A_DSL tRX-Leu-NNN-23:A_DSL tRNA-Leu-AAG-74:A_DSL tRNA-Leu-AAG-114:A_DSL tRNA-Leu-AAG-95:A_DSL tRNA-Leu-AAG-93:A_DSL tRNA-Leu-AAG-106:A_DSL tRNA-Leu-AAG-15:A_DSL tRNA-Leu-AAG-12:A_DSL tRNA-Leu-AAG-89:A_DSL tRNA-Leu-AAG-82:A_DSL tRNA-Leu-TAG-47:A_DSL tRNA-Leu-AAG-1:A_DSL tRNA-Leu-AAG-58:A_DSL tRNA-Leu-AAG-51:A_DSL tRNA-Leu-AAG-56:A_DSL tRNA-Leu-TAG-6:A_DSL Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-AAG-1 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCGAAUCCCACCGCUGCCACCA [1] tRNA-Leu-AAG-12 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-UGUGGGUUCGAAUCCCACCGCUGCCACCA [2] tRNA-Leu-AAG-15 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUUGAAUCCCACCGCUGCCACCA [3] tRNA-Leu-AAG-38 -GGUAGCGUGGCCGAGU--GGUCAAAGGUGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCGAAUCCCACCGCUGCCACCA [4] tRNA-Leu-AAG-51 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCAAAUCCCACCACUGCCACCA [5] tRNA-Leu-AAG-56 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUGGAUUAAGGCUCGAGU-G-CGUGGGUUUGAAUCCCACCGCUGCCACCA [6] tRNA-Leu-AAG-58 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-UGUGGAUUCGAAUCCCACCGCUGCCACCA [7] tRNA-Leu-AAG-74 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCAAGUCCCACCGCUGCCACCA [8] tRNA-Leu-AAG-82 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUGGAUUAAGUCUCUAGU-G-CGUGGGUUCGAAUCCCACCGCUGCCACCA [9] tRNA-Leu-AAG-89 -GGUAGCGUGGCCGAGU--GGUCUAAGGUGCUGGAUUAAGGCUCCAGU---CGUGGGUUUGAAUCCCACCGCUGCCACCA [10] tRNA-Leu-AAG-93 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUAGAUUAAGGCUUCAGU-G-CGUGGGUUCGAAUCCCACCGCUGCCACCA [11] tRNA-Leu-AAG-95 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCAAAUCCCAUCGCUGCCACCA [12] tRNA-Leu-AAG-101 -GGUAGCGUGGCCGAGU--GGUCUAAGGUGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCAAGUCCCACCGCUGCCACCA [13] tRNA-Leu-AAG-106 -GGUAGCGUGGCCGAGU--GGUCUAAGGUGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUUAAAUCCCACCACUGCCACCA [14] tRNA-Leu-AAG-114 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUAGAUUAAGGCUUCAGU-GCCGUGGGUUCGAAUCCCACCGCUGCCACCA [15] tRX-Leu-NNN-23 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUAGAUUAAGACUUCAGU-G-CGUGGGUUCGAAUCCCACCGCUGCCACCA [16] tRX-Leu-NNN-95 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUAGAUUAAGGCUUCAGU-G-CGUGGGUUCGAAUCCCAACGCUGCCACCA [17] tRX-Leu-NNN-125 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUGGAUUAAGGCUUCA-AUG-UGUGGGUUUGAAUCCCACCGCUGCCACCA [18] tRNA-Leu-TAG-6 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUGGAUUUAGGCUCCAGU-G-CGUGGGUUCGAAUCCCACCGCUGCCACCA [19] tRNA-Leu-TAG-47 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGUUGGAUUUAGGAUCCAGU-G-CGUGGGUUCGAAUCCCAUCGCUGCCACCA [20] 5050 .GGUAGCGUGGCCGAGU--GGUC......................................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 32: 5051 Fragment Coverage tRNA-Val-TAC-10:A_DSL Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-TAC-10 -GGUUCCAUAGUGUAGC--GGUU-AUCACGUCUGCUUUACACGCAGAAGGUCCUGGGUUCGAGCCCCAGUGGAACCACCA [1] 5051 .GGUUCCAUAGUGUAGC--GG........................................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 33: 5052 Fragment Coverage tRNA-Val-TAC-4:A_DSLE Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-TAC-4 -GGUUCCAUAGUGUAGU--GGUU-AUCACGUCUGCUUUACACGCAGAAGGUCCUGGGUUCGAGCCCCAGUGGAACCACCA [1] 5052 .GGUUCCAUAGUGUAGU--GGUU-AUC..................................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 34: 5054 Fragment Coverage tRNA-Ser-AGA-96:A_DSLE tRX-Ser-NNN-34:A_DSLE tRNA-Ser-TGA-54:A_DSLE tRNA-Ser-AGA-147:A_DSLE tRNA-Ser-AGA-15:A_DSLE tRNA-Pro-TGG-67:A_DSLE tRNA-Ser-TGA-36:A_DSLE tRNA-Ser-CGA-20:A_DSLE tRNA-Ser-CGA-22:A_DSLE tRNA-Ser-TGA-97:A_DSLE tRNA-Ser-TGA-76:A_DSLE tRNA-Ser-TGA-44:A_DSLE Fragment Aminos Pro,Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-TGG-67 -GUAGUCGUGGCCGAGA--GGUU-AAGGCGAUGGACUUGGAAUUCAUU-G-CGCAGGUUCGAACCCUGCCGACUACGCCA [1] tRNA-Ser-AGA-15 -GUAGUCGUGGCCGAGA--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [2] tRNA-Ser-AGA-96 -GUAGUCGUGGCCGAGA--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CACAGGUUCGAAUCCUGCUGACUACGCCA [3] tRNA-Ser-AGA-147 -GUAGUCGUGGCCGAGA--GGUU-AAGGCGAUGGACAAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCAGACUACGCCA [4] tRNA-Ser-CGA-20 -GUAGUCGUGGCCGAGA--GGUU-AAGGCGAUGGACUCGAAAUCUAUU-G-CGCAGGUUCGAACCCUGCCGACUACGCCA [5] tRNA-Ser-CGA-22 -GUAGUCGUGGCCGAGA--GGUU-AAGGCGAUGGACUCGAAAUCCAUU-G-UGCAGGUUUGAACCCUGCCGACUACGCCA [6] tRX-Ser-NNN-34 -GUAGUCGUGGCCGAGA--GGUU-AAGGCGAUGAACUCGAAAUACAUU-G-CGCAGGUUCAGACCCUGCUGACUACACCA [7] tRNA-Ser-TGA-36 -GUAGUCGUGGCCGAGA--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUCAAACCCUGCCGACUACGCCA [8] tRNA-Ser-TGA-44 -GUAGUCGUGGCCGAGA--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUCGAACCCUGCCGACUACGCCA [9] tRNA-Ser-TGA-54 -GUAGUCGUGGCCGAGA--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUCAAACCCUGCCGACUACGCCA [10] tRNA-Ser-TGA-76 -GUAGUCGUGGCCGAGA--GGUU-AAGGCGAUGGACUUGAAAGCCAUU-G-CGCAGGUUCGAACCCUGCCGACUACGCCA [11] tRNA-Ser-TGA-97 -GUAGUCGUGGCCGAGA--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUCGAACCCUGCCGACCAUGCCA [12] 5054 .GUAGUCGUGGCCGAGA--GGUU-AAG..................................................... [1,2,3,4,5,6,7,8,9,10,11,12] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 35: 5057 Fragment Coverage tRNA-Ser-CGA-3:A_DSL tRNA-Ser-AGA-50:A_DSL tRNA-Ser-TGA-1:A_DSL tRNA-Ser-AGA-95:A_DSL tRNA-Ser-TGA-12:A_DSL tRNA-Ser-TGA-15:A_DSL tRNA-Ser-TGA-5:A_DSL tRNA-Ser-AGA-106:A_DSL tRNA-Ser-AGA-109:A_DSL tRNA-Ser-TGA-66:A_DSL tRNA-Ser-TGA-52:A_DSL tRNA-Ser-TGA-20:A_DSL tRNA-Ser-AGA-85:A_DSL tRNA-Ser-AGA-81:A_DSL tRNA-Ser-TGA-26:A_DSL tRNA-Ser-AGA-89:A_DSL tRNA-Ser-AGA-30:A_DSL tRNA-Ser-AGA-76:A_DSL tRNA-Ser-CGA-32:A_DSL tRNA-Ser-CGA-31:A_DSL tRNA-Ser-TGA-62:A_DSL tRNA-Ser-TGA-67:A_DSL tRNA-Ser-TGA-68:A_DSL tRNA-Ser-TGA-100:A_DSL tRNA-Ser-AGA-155:A_DSL tRNA-Phe-AAA-6:A_DSL tRNA-Phe-AAA-7:A_DSL tRNA-Ser-AGA-5:A_DSL tRNA-Ser-TGA-32:A_DSL tRNA-Ser-TGA-33:A_DSL tRNA-Ser-AGA-28:A_DSL tRNA-Ser-AGA-123:A_DSL tRNA-Ser-TGA-77:A_DSL tRNA-Ser-AGA-46:A_DSL tRNA-Ser-TGA-16:A_DSL tRNA-Ser-AGA-90:A_DSL tRNA-Ser-AGA-161:A_DSL tRNA-Ser-TGA-72:A_DSL tRNA-Ser-TGA-48:A_DSL Fragment Aminos Ser,Phe Fragment Mismatches U:19:G:1 G:7:A:1 Fragment Alignment # STOCKHOLM 1.0 tRNA-Phe-AAA-6 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAAAAAUCCUUU-G-CGCAGAUUCGAAUCCUGCUGACUACGCCA [1] tRNA-Phe-AAA-7 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAAAAAUACAUU-G-UGCAGGUUCGAAUCCUGCUGAUUACGCCA [2] tRNA-Ser-AGA-5 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCAAAUCCUGCCGACUACGCCA [3] tRNA-Ser-AGA-28 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGAUUCGAAUCCUGCCGACUACGCCA [4] tRNA-Ser-AGA-30 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCUGACUACGCCA [5] tRNA-Ser-AGA-46 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCAAAUCCUGCCGCCUACGCCA [6] tRNA-Ser-AGA-50 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUACAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [7] tRNA-Ser-AGA-76 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CACAGGUUCAAAUCCUGCCGACUACGCCA [8] tRNA-Ser-AGA-81 -GUAGUCAUGGCCGAGU--GUUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [9] tRNA-Ser-AGA-85 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAAGUUUGAAUCCUGCCGACUACGCCA [10] tRNA-Ser-AGA-89 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUCCCGACUACGCCA [11] tRNA-Ser-AGA-90 -GUAGUCGUGGCCGAGU--GGUU-AAGGUGAUGGACUAGAAAUCCUUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [12] tRNA-Ser-AGA-95 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGACGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUCUUGCCGACUACGCCA [13] tRNA-Ser-AGA-106 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU---CGUAGGUUCGAAUCCUGCCGACUAUGCCA [14] tRNA-Ser-AGA-109 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUUGAAUCCUGCUGACUAUGCCA [15] tRNA-Ser-AGA-123 -GUAGUCGUGGCCGAGU--GGCU-AAGGCGAUGGCCUAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCUGACUACGCCA [16] tRNA-Ser-AGA-155 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-A-UGCAGGUUCGAAUCCGGCCAACUACGCCA [17] tRNA-Ser-AGA-161 -GUAGUCGUGGCCGAGU--GGU--AAGGUGAUCGACUAGAAAUCCAUU-A-CGCAGGUUCGAAUCCUGCCGACUACGCCA [18] tRNA-Ser-CGA-3 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUCGAAAUCCAUU-G-CGCAGGUUCGAACCCUGCCGACUACGCCA [19] tRNA-Ser-CGA-31 -GUAGUCGUGGCCGAGU--GGUU-AAGGCAAUGGACUCGAAAUUCAAU-G-CGCAGGUUAGAAUCCUGCCGACUACGCCA [20] tRNA-Ser-CGA-32 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUCGAAAUCCAUU-A-UGCAGGUUCGAACCCUGCUGACUACGCCA [21] tRNA-Ser-TGA-1 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [22] tRNA-Ser-TGA-5 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [23] tRNA-Ser-TGA-12 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-A-CGCAGGUUCGAAUCCUGCCGACUACGCCA [24] tRNA-Ser-TGA-15 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGAUUUGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [25] tRNA-Ser-TGA-16 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [26] tRNA-Ser-TGA-20 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCUGACUACGCCA [27] tRNA-Ser-TGA-26 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCUUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [28] tRNA-Ser-TGA-32 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [29] tRNA-Ser-TGA-33 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGAAUUUGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [30] tRNA-Ser-TGA-48 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-UGCAGGUUCGAAUCCUGCUGACUACGCCA [31] tRNA-Ser-TGA-52 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUUGG-CGCAGGUUCGAAUCCUGCCGACUACGCCA [32] tRNA-Ser-TGA-62 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUUGAAUUCUGCUGACUACGCCA [33] tRNA-Ser-TGA-66 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCUUU-G-CGCAGGUUCGAAUACUGCCGACUACGCCA [34] tRNA-Ser-TGA-67 -GUAGUCGUGGCCGAGU--GGUU-AAUGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [35] tRNA-Ser-TGA-68 -GUAGUCGUGGCCGAGU--GGUU-AAGGUGAUGGACUUGAAAUCCAUU-G-UGCAGGUUUGAAUCCUGCCGACUACGCCA [36] tRNA-Ser-TGA-72 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAGCCAUU-G-CGCAGGUUCGAGUCCUGCUGACUACGCCA [37] tRNA-Ser-TGA-77 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUACGAAUCCUGCUGACUACGCCA [38] tRNA-Ser-TGA-100 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAAGGACUUGAAAUCUAUU-A-CGCAGGUUCAAAUCCUGCCAACUACGCCA [39] 5057 .GUAGUCGUGGCCGAGU--GU........................................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 36: 5058 Fragment Coverage tRNA-Ser-CGA-14:A_DSL Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-CGA-14 -GUCACGGUGGCCGAGA--GGUU-AAGGCGUUGGACUCGAAAUCCAAU-G-CACAGGUUCGAAUCCUGUUCGUGACGCCA [1] 5058 .GUCACGGUGGCCGAGA--GGU.......................................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 37: 5061,3008 Fragment Coverage tRNA-Leu-CAA-72:A_DSL tRNA-Leu-CAG-119:A_DSL tRNA-Leu-CAG-39:A_DSL tRNA-Leu-CAG-3:A_DSL tRNA-Leu-CAG-124:A_DSL tRNA-Leu-CAG-125:A_DSL tRX-Leu-NNN-28:A_DSL tRNA-Leu-CAA-5:A_DSL tRNA-Leu-CAA-3:A_DSL tRNA-Leu-CAA-1:A_DSL tRNA-Leu-CAA-9:A_DSL tRNA-Leu-TAG-72:A_DSL tRX-Leu-NNN-109:A_DSL tRNA-Leu-CAG-70:A_DSL tRNA-Leu-TAG-3:A_DSL Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-CAA-1 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G-CGUGGGUUCGAAUCCCACUUCUGACACCA [1] tRNA-Leu-CAA-3 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACACCA [2] tRNA-Leu-CAA-5 -GUCAGGAUGGCCGAGU--GGUCUAAGGUGCCAGACUCAAGUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACACCA [3] tRNA-Leu-CAA-9 -GUCAGGAUGGCCGAGU--GGUCUGAGGCGCCAGACUCAAGUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACACCA [4] tRNA-Leu-CAA-72 -GUCAGGAUGGCCGAGU--GGUCUAAUGCGCUGCGUUCAAGUCGCAGU-G-CGUUGGUUCGAAUCCCACUUCUGACACCA [5] tRNA-Leu-CAG-3 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACACCA [6] tRNA-Leu-CAG-39 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCUGCGUUCAGGUCGCGGU-G-CGUGGGUUCAAAUCCCACUUCUGACACCA [7] tRNA-Leu-CAG-70 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCUGCGUUCAGGUCGCAGU-G-UGUGGUUUCAAAUCCCACUUCUGACACCA [8] tRNA-Leu-CAG-119 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCUGCGUUCAGGUCGCAGU-G-UGUGGUUUCAAAUUCCACUUCUGACACCA [9] tRNA-Leu-CAG-124 -GUCAGGAUGGCCGAGU--GGUCUAAGGUGCUGCGUUCAGGUCGCAGU-G-UGUGGUUUCAAAUCCCACUUCUGACACCA [10] tRNA-Leu-CAG-125 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCUGCGUUCAGGUUGCAGU-G-UGUGGUUUCAGAUCCCACUUCUGACACCA [11] tRX-Leu-NNN-28 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCUGCGUUCAGGUCGUAGU-U-CGUGGGUUCAAAUCCUAUUUCAGACACCA [12] tRX-Leu-NNN-109 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCUGUGUUCAGGUAGCAGU-G-CCUGGUUUCAAAUCCCACUUCUGACACCA [13] tRNA-Leu-TAG-3 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCUGUGUUUAGGUCGCAGU-G-UGUGGGUUCGAAUCCCACUUCUGACACCA [14] tRNA-Leu-TAG-72 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCUGCGUUUAGGUCGCAGU-G-CGAGGG-UCGAAUCCCACUUCUGACACCA [15] 5061 .GUCAGGAUGGCCGAGU--GGUC......................................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15] 3008 ..............................................................AUCCCACUUCUGACACCA [1,4,6,10,11,14] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 38: 5062 Fragment Coverage tRNA-Ser-AGA-3:A_DSLE Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-AGA-3 -GUUGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACAACGCCA [1] 5062 .GUUGUCGUGGCCGAGU--GGUU-AAG..................................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 39: 3003,5063 Fragment Coverage tRNA-Val-TAC-23:A_DSLE tRNA-Val-TAC-3:A_DSLE tRNA-Val-TAC-2:A_DSLE tRNA-Val-CAC-53:A_DSLE tRNA-Val-TAC-19:A_DSLE tRNA-Val-TAC-14:A_DSLE tRNA-Val-TAC-17:A_DSLE tRNA-Val-TAC-15:A_DSLE tRX-Val-NNN-51:A_DSLE tRNA-Val-TAC-7:A_DSLE tRNA-Val-TAC-6:A_DSLE tRNA-Val-TAC-25:A_DSLE Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-CAC-53 -GUUUCCAUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAUAGGUCCCCAGUUCGAAACUGGGCGGAAACACCA [1] tRX-Val-NNN-51 -GUUUCCAUAGUGUAGU--GGUU-AUCAUGUUCUUCUUACACGCGAAAGG-UCCCAGUUCGAAACUGGGUGGAAACACCA [2] tRNA-Val-TAC-2 -GUUUCCAUAGUGUAGU--GGUU-AUCACGUUCGCCUUACACGCGAAAGGUCCCCAGUUCGAAACUGGGUGGAAACACCA [3] tRNA-Val-TAC-3 -GUUUCCAUAGUGUAGU--GGUU-AUCACGUUCGCUUUACACGCGAAAGGUCCCCAGUUCGAAACUGGGUGGAAACACCA [4] tRNA-Val-TAC-6 -GUUUCCAUAGUGUAGU--GGUU-AUCACGUUCGCCUUACACGCGAAAGGUCCCCAGUUCAAAACUGGGUGGAAACACCA [5] tRNA-Val-TAC-7 -GUUUCCAUAGUGUAGU--GGUU-AUCACGUUUGCCUUACACGCGAAAGGUCCCCAGUUCGAAACUGGGUGGAAACACCA [6] tRNA-Val-TAC-14 -GUUUCCAUAGUGUAGU--GGUU-AUCACGUUCGCCUUACACGCGAAUGGUCCCCAGUUCGAAACUGGGCGGAAACACCA [7] tRNA-Val-TAC-15 -GUUUCCAUAGUGUAGU--GGUU-AUCACGUUCGCCUUACGCGCGAAAGGUCUCCAGUUCGAAACUGGGUGGAAACACCA [8] tRNA-Val-TAC-17 -GUUUCCAUAGUGUAGU--GGUU-AUCACGUUCGCCUUACACGCGAAAGGUCCCCAGUUCGAAACUGGGCAGAAACACCA [9] tRNA-Val-TAC-19 -GUUUCCAUAGUGUAGU--GGUU-AUCAUGUUCGCCUUACACGUGAAAGGUCCCCAGUUCGAAACUGGGUGGAAGCACCA [10] tRNA-Val-TAC-23 -GUUUCCAUAGUGUAGU--GGUU-AUCACGAUCGCCUUACACGCGAAAGGUCCCCAGUUCGAAACUGGGUGGAAACACCA [11] tRNA-Val-TAC-25 -GUUUCCAUAGUGUAGU--GGUU-AUCACGUUUGCCUUACAUGCGAAAGGUCCCCAUUUCGAAACUGGGUGGAAACACCA [12] 5063 .GUUUCCAUAGUGUAGU--GGUU-AUCA.................................................... [1,2,3,4,5,6,7,8,9,10,11,12] 3003 ...............................................................ACUGGGCGGAAACACCA [1,7] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 40: 5064 Fragment Coverage tRNA-Val-CAC-51:A_DSLE tRNA-Val-CAC-68:A_DSLE tRNA-Val-CAC-66:A_DSLE Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-CAC-51 -GUUUCCGUAGUGUAGU--GGUU-AACACGUUCGCCUCACACGCGAAAGGUCCCCAGUUCGAAACUGGGCGAAAACACCA [1] tRNA-Val-CAC-66 -GUUUCCGUAGUGUAGU--GGUU-AACACGUUUGCCUCACACGCGAAAGGUCCCCAGUUCGAAACUGGGCGAAAACACCA [2] tRNA-Val-CAC-68 -GUUUCCGUAGUGUAGU--GGUU-AACACGUUCGCCUCACAUGCGAAAGGUCCCCAGUUCGAAACUGGGCGAAAACACCA [3] 5064 .GUUUCCGUAGUGUAGU--GGUU-AAC..................................................... [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 41: 5065 Fragment Coverage tRX-Val-NNN-60:A_DSLE tRX-Val-NNN-44:A_DSLE tRX-Val-NNN-47:A_DSLE tRX-Val-NNN-5:A_DSLE tRX-Val-NNN-22:A_DSLE tRNA-Val-CAC-74:A_DSLE Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-CAC-74 -GUUUCCGUAGUGUAGU--GGUU-AUUACGUUCGCCUCACACGCGAAAGGUCCCCAGUUGGAAACUGGGUGGAAACACCA [1] tRX-Val-NNN-5 -GUUUCCGUAGUGUAGU--GGUU-AUUACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACACCA [2] tRX-Val-NNN-22 -GUUUCCGUAGUGUAGU--GGUU-AUUACGUUUGCUUUACACGCAAAAGGUCCCUUGUUCGAAACUGGGCGGAAACACCA [3] tRX-Val-NNN-44 -GUUUCCGUAGUGUAGU--GGUU-AUUACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGCCGGAAACACCA [4] tRX-Val-NNN-47 -GUUUCCGUAGUGUAGU--GGUU-AUUACGUUUGCUUUACAUGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAAUACCA [5] tRX-Val-NNN-60 -GUUUCCGUAGUGUAGU--GGUU-AUUACGUUAGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACACCA [6] 5065 .GUUUCCGUAGUGUAGU--GGUU-AUUA.................................................... [1,2,3,4,5,6] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 42: 5069,5068 Fragment Coverage tRNA-Val-AAC-40:A_DSLE tRNA-Val-AAC-47:A_DSLE tRNA-Val-AAC-48:A_DSLE tRNA-Val-AAC-7:A_DSLE tRNA-Val-TAC-21:A_DSLE tRNA-Val-AAC-61:A_DSLE tRNA-Val-AAC-60:A_DSLE tRNA-Val-AAC-13:A_DSLE tRNA-Val-AAC-11:A_DSLE tRNA-Val-AAC-15:A_DSLE tRNA-Val-AAC-18:A_DSLE tRX-Val-NNN-16:A_DSLE tRNA-Val-AAC-34:A_DSLE tRNA-Val-AAC-35:A_DSLE tRNA-Val-AAC-20:A_DSLE tRNA-Val-AAC-27:A_DSLE tRNA-Val-AAC-25:A_DSLE tRX-Val-NNN-28:A_DSLE tRX-Val-NNN-29:A_DSLE tRNA-Val-AAC-59:A_DSLE tRNA-Val-AAC-36:A_DSLE Fragment Aminos Val Fragment Mismatches C:7:G:1 Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-AAC-7 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACACGCGAAAGGUCCUCGGUUCGAUACCGAGCAGAAACACCA [1] tRNA-Val-AAC-11 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACACGUGAAAGGUCCUCGGUUCGAAACCGAGCAGAAACACCA [2] tRNA-Val-AAC-13 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACACGCGAAAGGUCCUUGGUUCGAAACCGAGCAGAAACACCA [3] tRNA-Val-AAC-15 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACAUGCGAAAGGUCCUCGGUUCGAAACCGAGCAGAAACACCA [4] tRNA-Val-AAC-18 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACACGCGAAAGGUCCUCGGUUCGAAACCGCGCAGAAACACCA [5] tRNA-Val-AAC-20 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACACGCGAAAGGUCUUCGGUUCGAAACCGAGCAGAAACACCA [6] tRNA-Val-AAC-25 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACAAGCGAAAGGUCCUUGGUUCGAAACCGAGCAGAAACACCA [7] tRNA-Val-AAC-27 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACACGCGAAAGGUCCUCGGUUCGAAACCAAGCGGAAACACCA [8] tRNA-Val-AAC-34 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACACGCGAAAGGUCCUUGGUUCGAAACCGAGUAGAAACACCA [9] tRNA-Val-AAC-35 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACACGCGAAAGGUCCUCGGUUCGAAACCGAGCAGAAACCCCA [10] tRNA-Val-AAC-36 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACACGCGAAAGGUCCUCUGUUCGAAACCGAGCAGAAACACCA [11] tRNA-Val-AAC-40 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACACGCGAAAGGUCCUCGGUUCGCAACCGAGCAGAAACACCA [12] tRNA-Val-AAC-47 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGUCUAACAUGCGAAAGGUCCUCGGUUCGAAACCGAGCAGAAACACCA [13] tRNA-Val-AAC-48 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUUGCCUAACACGCGAAAGGUCCUCGGUUCGAAACUGAGCAGAAACACCA [14] tRNA-Val-AAC-59 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUAGCCUAACACGCGAGAGGUCCUCGGUUCGAAACCGAGCAGAAACACCA [15] tRNA-Val-AAC-60 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACACGCGAAAGGUCCUCGGUUUUAAACCGAGCAGAAACACCA [16] tRNA-Val-AAC-61 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACAUGUGAAAGGUCCUCGGUUCGAAACCGAGCAGAAAUACCA [17] tRX-Val-NNN-16 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACACGCGAUAGGUCCUCGGUUUGAAACCGAGCAGAAACCCCA [18] tRX-Val-NNN-28 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACACGCGAAAGGUCCUCGGUACGAAAUCGAGCAGAAACACCA [19] tRX-Val-NNN-29 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUAACCCGCGAAAGGUCCUUGGUUUGAAACUGAGCAGAAACACCA [20] tRNA-Val-TAC-21 -GUUUCUGUAGUGUAGU--GGUC-AUCACGUUCGCCUUACAUGCAAAAGGUCCUCGGUUCGAAACCGAGCAGAAACACCA [21] 5069 .GUUUCUGUAGUGUAGU--GGUC-AUC..................................................... [5,6,11,14,15,19] 5068 .GUUUCUCUAGUGUAGU--GGUC-AUCA.................................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 43: 5070 Fragment Coverage tRNA-Val-CAC-31:A_DSLE tRNA-Val-CAC-46:A_DSLE tRNA-Val-CAC-48:A_DSLE tRNA-Val-AAC-3:A_DSLE tRNA-Val-CAC-24:A_DSLE tRNA-Val-CAC-55:A_DSLE tRNA-Val-TAC-8:A_DSLE tRNA-Val-CAC-6:A_DSLE tRX-Val-NNN-32:A_DSLE tRNA-Val-CAC-18:A_DSLE tRNA-Val-TAC-26:A_DSLE Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-AAC-3 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUAACACGCGAAAGGUCCUCGGUUCGAAACCGAGCAGAAACACCA [1] tRNA-Val-CAC-6 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAGGUCCCCAGUUCGAAACUGGGCGGAAACACCA [2] tRNA-Val-CAC-18 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAGGUCCCCAGUUCAAAACUGGGCGGAAACACCA [3] tRNA-Val-CAC-24 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACAUGCGAAAGGUCCCCAGUUCGAAACUGGGCAGAAACACCA [4] tRNA-Val-CAC-31 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAGGUCCCCAGUUUGAAACUGGGCGGAAACACCA [5] tRNA-Val-CAC-46 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACAGGCGAAAGGUCCCCAGUUCGAAACUGGGCGGAAACACCA [6] tRNA-Val-CAC-48 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAGGUCCCCAGUUCGGAACUGGGCGGAAACACCA [7] tRNA-Val-CAC-55 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAGGUCCCCAGUUUGAAACUGGGUGGAAACACCA [8] tRX-Val-NNN-32 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAGG-UCCCCGUUUGAAACUGGGCGGAAACACCA [9] tRNA-Val-TAC-8 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUUACACGCGAAAGGUCCCCAGUUCAAAACUGGGCGGAAACACCA [10] tRNA-Val-TAC-26 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCACCUUACAUGUGAAAGGUCCUCGGUUCGAAACCAAGCAGAAACACCA [11] 5070 .GUUUCUGUAGUGUAGU--GGUU-AUCA.................................................... [1,2,3,4,5,6,7,8,9,10,11] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 44: 5071 Fragment Coverage tRX-Glu-NNN-17:A_DSLE_CS tRNA-Glu-TTC-12:A_DSLE_CS tRX-Glu-NNN-27:A_DSLE_CS tRX-Glu-NNN-54:A_DSLE_CS tRNA-Glu-TTC-48:A_DSLE_CS tRNA-Glu-TTC-43:A_DSLE_CS tRNA-Glu-TTC-49:A_DSLE_CS tRX-Glu-NNN-30:A_DSLE_CS Fragment Aminos Glu Fragment Alignment # STOCKHOLM 1.0 tRX-Glu-NNN-17 -UCCCAUAUGGUCUAGC--GGUC-AGGAUUCCUGGUUUUCACCCAGGCGG-CCUGGGUUCGACUCCCGGUUUGGGAACCA [1] tRX-Glu-NNN-27 -UCCCAUAUGGUCUAGC--GGUC-AGGAUUCCUGGUUUUCACCCAGGCGG-CUCGGGUUCGACUCCCGGUUUGGGAACCA [2] tRX-Glu-NNN-30 -UCCCAUAUGGUCUAGC--GGUC-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUCCCGAUUUGGGAACCA [3] tRX-Glu-NNN-54 -UCCCAUAUGGUCUAGC--GGUC-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUUGACUCCCGAUUUGGGAACCA [4] tRNA-Glu-TTC-12 -UCCCAUAUGGUCUAGC--GGUC-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUCCCGGUAUGGGAACCA [5] tRNA-Glu-TTC-43 -UCCCAUAUGGUCUAGC--GGUC-AGGAUUCCUGGUUUUCACCCAAGCGG-CCCGGGUUCGACUCCCGGUAUGGGAACCA [6] tRNA-Glu-TTC-48 -UCCCAUAUGGUCUAGC--GGUC-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUUGACUCCCGGUAUGGGAACCA [7] tRNA-Glu-TTC-49 -UCCCAUAUGGUCUAGC--GGUC-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUCCCGGUUUGGGAACCA [8] 5071 .UCCCAUAUGGUCUAGC--GGUC-AGGAUUCC................................................ [1,2,3,4,5,6,7,8] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 45: 5072 Fragment Coverage tRNA-Glu-TTC-19:A_DSLE_CS tRX-Glu-NNN-12:A_DSLE_CS tRX-Glu-NNN-15:A_DSLE_CS tRNA-Glu-TTC-10:A_DSLE_CS tRNA-Glu-TTC-53:A_DSLE_CS tRX-Glu-NNN-61:A_DSLE_CS tRNA-Glu-CTC-17:A_DSLE_CS tRX-Glu-NNN-6:A_DSLE_CS tRNA-Glu-TTC-44:A_DSLE_CS tRX-Glu-NNN-41:A_DSLE_CS tRX-Glu-NNN-63:A_DSLE_CS tRNA-Glu-TTC-47:A_DSLE_CS tRNA-Glu-TTC-28:A_DSLE_CS tRNA-Glu-TTC-24:A_DSLE_CS tRNA-Glu-TTC-26:A_DSLE_CS tRNA-Glu-TTC-27:A_DSLE_CS tRX-Glu-NNN-39:A_DSLE_CS tRX-Glu-NNN-37:A_DSLE_CS tRNA-Glu-TTC-8:A_DSLE_CS tRNA-Glu-TTC-7:A_DSLE_CS tRNA-Glu-TTC-3:A_DSLE_CS Fragment Aminos Glu Fragment Alignment # STOCKHOLM 1.0 tRNA-Glu-CTC-17 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUCUCACCCAGGCGG-CCCGGGUUCGACUCCCGGUAUGGGAACCA [1] tRX-Glu-NNN-6 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCUGGGUUCGACUCCCGGUAUGUGAACCA [2] tRX-Glu-NNN-12 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCAUCCAGGCUG-CCCGGGUUCGACUCCCGGUGUGGGAACCA [3] tRX-Glu-NNN-15 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGC-GCCCUGGGUUCGACUCCCGGUAUGGAAACCA [4] tRX-Glu-NNN-37 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CGCGGGAUCGACUCCCGGUAUGGGAACCA [5] tRX-Glu-NNN-39 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCAGGGUUCGACUCCCGGUAUGCGAACCA [6] tRX-Glu-NNN-41 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUG-UUUUCACCCAGGCGG-CCCGGGUUCGACUCCCGGUAUGGGAACCA [7] tRX-Glu-NNN-61 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCGGGUGG-CCCCGGUUCGACUCACGGUAUGGGAACCA [8] tRX-Glu-NNN-63 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUCCUGGUAUGGAUACCA [9] tRNA-Glu-TTC-3 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCAACUCCCGGUAUGGGAACCA [10] tRNA-Glu-TTC-7 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGCUUUCACCCAGGCGG-CCUGGGUUCGACUCCCGGUAUGGGAACCA [11] tRNA-Glu-TTC-8 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGA-CCCGGGUUCGACUCCCGGUAUGGGAACCA [12] tRNA-Glu-TTC-10 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-UCCGGGUUCGACUCCCGGUAUGGGAACCA [13] tRNA-Glu-TTC-19 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CUCGGGUUCGACUCCCGGUAUGGGAACCA [14] tRNA-Glu-TTC-24 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUCCCAGUAUGGGAACCA [15] tRNA-Glu-TTC-26 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGAGUUCGACUCCCGGUAUGGGAACCA [16] tRNA-Glu-TTC-27 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUCCCGGUAUGGAAACCA [17] tRNA-Glu-TTC-28 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUUCCGGUAUGGGAACCA [18] tRNA-Glu-TTC-44 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-UUCGGGUUCGACUCCCGGUAUGGGAACCA [19] tRNA-Glu-TTC-47 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUCCCGGCAUGGGAACCA [20] tRNA-Glu-TTC-53 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGC-GUCCCGGGUUCGAAUUCCGGUAUGGGAACCA [21] 5072 .UCCCAUAUGGUCUAGC--GGUU-AGGAUUCC................................................ [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 46: 5073 Fragment Coverage tRNA-Asp-GTC-1:A_DSLE_CS Fragment Aminos Asp Fragment Alignment # STOCKHOLM 1.0 tRNA-Asp-GTC-1 -UCCUCGUUAGUAUAGU--GGUA-AGUAUCCCCGCCUGUCACGCGGGAGA-CCGGGGUUCGAUUCCCCGACGGGGAGCCA [1] 5073 .UCCUCGUUAGUAUAGU--GGUA-AGUAUCCC................................................ [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 47: 3001 Fragment Coverage tRNA-Gln-TTG-6:TLE_Z Fragment Aminos Gln Fragment Alignment # STOCKHOLM 1.0 tRNA-Gln-TTG-6 -GGUUCUAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUAGAACCUCCA [1] 3001 ..............................................................AUCUCGGUAGAACCUCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 48: 5053,3002 Fragment Coverage tRNA-Gln-CTG-36:TLE_Z tRNA-Gln-CTG-35:TLE_Z tRNA-Gln-CTG-1:TLE_Z tRNA-Gln-CTG-31:TLE_Z tRX-Gln-NNN-19:TLE_Z tRX-Gln-NNN-11:TLE_Z tRX-Gln-NNN-15:TLE_Z tRNA-Gln-CTG-64:TLE_Z tRNA-Gln-TTG-10:TLE_Z tRNA-Gln-TTG-11:TLE_Z tRNA-Gln-TTG-17:TLE_Z tRNA-Gln-CTG-24:TLE_Z tRNA-Gln-TTG-19:TLE_Z tRNA-Gln-CTG-27:TLE_Z tRNA-Gln-CTG-22:TLE_Z tRNA-Gln-CTG-23:TLE_Z tRNA-Gln-TTG-9:TLE_Z tRNA-Gln-TTG-1:TLE_Z tRNA-Gln-TTG-4:TLE_Z tRNA-Gln-TTG-27:TLE_Z tRX-Gln-NNN-8:TLE_Z tRX-Gln-NNN-3:TLE_Z tRNA-Gln-CTG-13:TLE_Z tRNA-Gln-CTG-62:TLE_Z tRX-Gln-NNN-7:TLE_Z tRNA-Gln-CTG-72:TLE_Z tRNA-Gln-TTG-28:TLE_Z tRNA-Gln-TTG-20:TLE_Z tRNA-Gln-TTG-23:TLE_Z tRNA-Gln-CTG-11:TLE_Z tRNA-Gln-CTG-10:TLE_Z tRNA-Gln-CTG-12:TLE_Z tRNA-Gln-CTG-15:TLE_Z tRNA-Gln-CTG-14:TLE_Z tRX-Gln-NNN-31:TLE_Z tRX-Gln-NNN-36:TLE_Z tRNA-Gln-CTG-9:TLE_Z tRNA-Gln-CTG-8:TLE_Z tRNA-Gln-CTG-3:TLE_Z tRNA-Gln-CTG-2:TLE_Z tRNA-Gln-CTG-58:TLE_Z tRNA-Gln-CTG-54:TLE_Z tRNA-Gln-CTG-50:TLE_Z tRNA-Gln-TTG-2:TLE_Z tRNA-Gln-CTG-56:TLE_Z tRX-Gln-NNN-22:TLE_Z tRNA-Gln-CTG-52:TLE_Z tRNA-Gln-CTG-43:TLE_Z tRNA-Gln-CTG-40:TLE_Z tRNA-Gln-CTG-45:TLE_Z tRX-Gln-NNN-6:TLE_Z tRX-Gln-NNN-26:TLE_Z Fragment Aminos Gln Fragment Alignment # STOCKHOLM 1.0 tRNA-Gln-CTG-1 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCAA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [1] tRNA-Gln-CTG-2 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [2] tRNA-Gln-CTG-3 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGUGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [3] tRNA-Gln-CTG-8 -GGUUCCAUGGUGUAAU--GGUC-AGCACUCUGGACUCUGAAUCCAGUGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [4] tRNA-Gln-CTG-9 -GGUUCCAUGGUGUAAU--GGUC-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [5] tRNA-Gln-CTG-10 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCUA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [6] tRNA-Gln-CTG-11 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGU-GUUCCGAGUUCAAAUCUCGGUGGGACCUCCA [7] tRNA-Gln-CTG-12 -GGUUCCAUGGUGUAAU--GGCU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [8] tRNA-Gln-CTG-13 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCAA-UCUGAGUUCAAAUCUCGGUGGGACCUCCA [9] tRNA-Gln-CTG-14 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCUGAGUUCAAAUCUCGGUGGGACCUCCA [10] tRNA-Gln-CTG-15 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGUGA-UCUGAGUUCAAAUCUCGGUGGGACCUCCA [11] tRNA-Gln-CTG-22 -GGUUUCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [12] tRNA-Gln-CTG-23 -GGUUCCAUUGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGUGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [13] tRNA-Gln-CTG-24 -GGUUCCAUGGUGUAAU--GGUU-AGUACUCUGGACUCUGAAUCCAGCAA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [14] tRNA-Gln-CTG-27 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGCGUUCAAAUCUCGGUGGGACCUCCA [15] tRNA-Gln-CTG-31 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGAACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [16] tRNA-Gln-CTG-35 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGUGA-UCCAAGUUCAAAUCUCGGUGGGACCUCCA [17] tRNA-Gln-CTG-36 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAUUUCAAAUCUCGGUGGGACCUCCA [18] tRNA-Gln-CTG-40 -GGUUCCCUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [19] tRNA-Gln-CTG-43 -GGUUCCAUGGUGUAAU--GGUU-AGCGCUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [20] tRNA-Gln-CTG-45 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGCACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [21] tRNA-Gln-CTG-50 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAGUCCAGCAA-UCUGAGUUCAAAUCUCGGUGGGACCUCCA [22] tRNA-Gln-CTG-52 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUACAAAUCUCGGUGGGACCUCCA [23] tRNA-Gln-CTG-54 -GGUUUCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUUAAAUCUCGGUGGGACCUCCA [24] tRNA-Gln-CTG-56 -GGUUCCAUGGUGUUAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [25] tRNA-Gln-CTG-58 -GGUUCCAUGGUGUAAU--GUUU-AGCACUCUGGACUCUGAAUCCAGUGA-UCCAAGUUCAAAUCUCGGUGGGACCUCCA [26] tRNA-Gln-CTG-62 -GGUUCCAUGGUGUAAU--GGUU-AGCACUAUGGACUCUGAAUCCAGCGA-UCAGAGUUCAAAUCUCGGUGGGACCUCCA [27] tRNA-Gln-CTG-64 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGCACUCUGAAUCCAGCGA-UCUGAGUUCAAAUCUCGGUGGGACCUCCA [28] tRNA-Gln-CTG-72 -GGUUUCAUGGUGUAAU--GCUU-AGCACUCUGGACUCUGAAUCCAGCUA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [29] tRX-Gln-NNN-3 -GGUUCCAUGGCGUAAU--GGUU-AGCACUCUUGACUCUGAAUCCAGUGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [30] tRX-Gln-NNN-6 -GGUUCCAUGGUAUAAU--GGUU-AGCACUCUGGACUCUGAAUUCAGUGA-UCUGAGUUCAAAUCUCGGUGGGACCUCCA [31] tRX-Gln-NNN-7 -GGUU-CAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [32] tRX-Gln-NNN-8 -GGUUUCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCUA-UUUGAGUUCAAAUCUCGGUGGGACCUCCA [33] tRX-Gln-NNN-11 -GGUUCCUUUGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGUGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [34] tRX-Gln-NNN-15 -GGUUCCAUGGUG-AAU--GGUU-AGCACUCUGGACUCUGAAUCCAGUGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [35] tRX-Gln-NNN-19 -UGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAACGA-UCUGAGUUCAAAUCUCGGUGGGACCUCCA [36] tRX-Gln-NNN-22 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-ACCGAAUUCUAAUCUCGGUGGGACCUCCA [37] tRX-Gln-NNN-26 -GGUUCCAUGGUGUAAU--GGUU-AGCGCUCUGAACUCUGAAUCCAGCGA-UCUGAGUUCAAAUCUCGGUGGGACCUCCA [38] tRX-Gln-NNN-31 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGCACUCUGAAUCUAGCGA-UCUGAGUUCAAAUCUCGGUGGGACCUCCA [39] tRX-Gln-NNN-36 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUACAGCGA-UCCGAGUCCAAAUCUCGGUGGGACCUCCA [40] tRNA-Gln-TTG-1 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [41] tRNA-Gln-TTG-2 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGUGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [42] tRNA-Gln-TTG-4 -GGUCCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [43] tRNA-Gln-TTG-9 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCUA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [44] tRNA-Gln-TTG-10 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCUGAGUUCAAAUCUCGGUGGGACCUCCA [45] tRNA-Gln-TTG-11 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGUGA-UCUGAGUUCAAAUCUCGGUGGGACCUCCA [46] tRNA-Gln-TTG-17 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCAAGUUCAAAUCUCGGUGGGACCUCCA [47] tRNA-Gln-TTG-19 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCGACUUCAAAUCUCGGUGGGACCUCCA [48] tRNA-Gln-TTG-20 -GGUUCCAUGAUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [49] tRNA-Gln-TTG-23 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGUGA-UCAGAGUUCAAAUCUCGGUGGGACCUCCA [50] tRNA-Gln-TTG-27 -GGUUCCAUGGUGUAAU--GGCU-AGCACUCUGGGCUUUGAAUCCAGCAA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [51] tRNA-Gln-TTG-28 -GUUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGUGA-UCUGAGUUCAAAUCUCGGUGGGACCUCCA [52] 5053 .GGUUCCAUGGUGUAAU--GGUU-AG...................................................... [7,10,15,18,22,41,44,47,48,50] 3002 ..............................................................AUCUCGGUGGGACCUCCA [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 49: 3004,5067 Fragment Coverage tRNA-Val-CAC-40:TE_Z tRNA-Val-CAC-72:TE_Z tRNA-Val-CAC-4:TE_Z tRNA-Val-CAC-21:TE_Z tRNA-Val-CAC-73:TE_Z tRNA-Val-CAC-70:TE_Z Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-CAC-4 -GUUUCCGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAGGUCCCCAGUUCGAAACUGGGCGGGAACACCA [1] tRNA-Val-CAC-21 -GUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCCUCACACGCGAAAGGUCCCCAGUUCGAAACUGGGCGGGAACACCA [2] tRNA-Val-CAC-40 -GUUUCCGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAACGGUCCCCAGUUCGAAACUGGGCGGGAACACCA [3] tRNA-Val-CAC-70 -GUUUCCGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGAGAAAGGUCCCCAGUUUGAAACUGGGCGGGAACACCA [4] tRNA-Val-CAC-72 -GUUUCCGUAGUGUAGU--GAUU-UUCACGUUCGCCUCACACGCGAAAGGUCCCCAGUUCGAAACUGGGCGGGAACACCA [5] tRNA-Val-CAC-73 -GUUUCCGUAGUGUAGU--GGUU-CUCACAUUUGCCUCACACGCGAAAGGUCCCCAGUUCGAAACUGGGCGGGAACACCA [6] 5067 .GUUUCCGUAGUGUAGU--GGUU-AUCA.................................................... [3] 3004 ...............................................................ACUGGGCGGGAACACCA [1,2,3,4,5,6] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 50: 3006 Fragment Coverage tRX-Ile-NNN-47:TLE_Z tRX-Ile-NNN-40:TLE_Z tRX-Ile-NNN-96:TLE_Z tRX-Ile-NNN-97:TLE_Z tRX-Ile-NNN-44:TLE_Z tRX-Ile-NNN-15:TLE_Z tRX-Ile-NNN-77:TLE_Z tRX-Ile-NNN-72:TLE_Z tRX-Ile-NNN-7:TLE_Z tRX-Ile-NNN-58:TLE_Z tRNA-Ile-TAT-30:TLE_Z tRNA-Ile-TAT-27:TLE_Z tRNA-Ile-TAT-24:TLE_Z tRNA-Ile-TAT-25:TLE_Z tRNA-Ile-TAT-21:TLE_Z tRNA-Ile-TAT-29:TLE_Z tRX-Ile-NNN-6:TLE_Z tRX-Ile-NNN-80:TLE_Z tRX-Ile-NNN-23:TLE_Z tRNA-Ile-TAT-1:TLE_Z tRX-Ile-NNN-69:TLE_Z tRX-Ile-NNN-62:TLE_Z tRX-Ile-NNN-51:TLE_Z tRNA-Ile-TAT-18:TLE_Z tRNA-Ile-TAT-17:TLE_Z tRNA-Ile-TAT-16:TLE_Z tRNA-Ile-TAT-15:TLE_Z tRNA-Ile-TAT-11:TLE_Z tRX-Ile-NNN-21:TLE_Z tRX-Ile-NNN-22:TLE_Z tRX-Ile-NNN-68:TLE_Z tRX-Ile-NNN-4:TLE_Z tRX-Ile-NNN-52:TLE_Z tRNA-Ile-TAT-26:TLE_Z tRX-Ile-NNN-61:TLE_Z tRX-Ile-NNN-60:TLE_Z tRX-Ile-NNN-14:TLE_Z tRNA-Ile-TAT-13:TLE_Z tRX-Ile-NNN-32:TLE_Z tRNA-Ile-TAT-5:TLE_Z tRNA-Ile-TAT-7:TLE_Z tRNA-Ile-TAT-6:TLE_Z tRNA-Ile-TAT-3:TLE_Z tRNA-Ile-TAT-2:TLE_Z Fragment Aminos Ile Fragment Alignment # STOCKHOLM 1.0 tRX-Ile-NNN-4 -GCUCUAGUGGCGCAAUC-GGUC-AGCGCGCGGUACUUAUAAUGCUGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [1] tRX-Ile-NNN-6 -GCUCCAGUGGCGCAAUC-GAUC-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [2] tRX-Ile-NNN-7 -GCUCCAGUGGCGCAAUC-AGUC-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [3] tRX-Ile-NNN-14 -GCUCCAGUGGCGCAAUC-GGUC-AGCGAGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [4] tRX-Ile-NNN-15 -GCUCCAGUGGUGCAAUC-GGUUUAGCGUGUGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [5] tRX-Ile-NNN-21 -GCUCCAGUGGCGCAAUC-GGUC-AGCGCGCGGUUCUUAUAAUGCCGAGGUUGUGAGCUCGAGCCUCACCUGGAGCACCA [6] tRX-Ile-NNN-22 -GCUCCGGUGGCGCAAUC-GGUC-AGCGCACGGUAUUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [7] tRX-Ile-NNN-23 -GCUCCAGUGGCGCAAUC-GGUU-AGCGGGUGGUACUUAUAUUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [8] tRX-Ile-NNN-32 -GCUCCAGUGGUGCAAUC-GGUC-AGCGCGUGGUACUUAUAAUGCCGAGGUUGUGAGUUUGAGCCUCACCUGGAGCACCA [9] tRX-Ile-NNN-40 -GCUCCAGUGGCGCAAUC-GGUC-AGCGCGCAGUAUUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [10] tRX-Ile-NNN-44 -GCUCCAGUGGCGCAAUC-GGUC-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUAAGUUUAAGCCUCACCUGGAGCACCA [11] tRX-Ile-NNN-47 -GCUCCAGUGGCGCAAUC-GGUU-AGCGGGCGGUACUUAUAUUGCUGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [12] tRX-Ile-NNN-51 -GCUCCAGUGGCGCAAUC-GGGC-AGCGCGUGGUACUUAUAAUGCCGAGGUUGUGAGUUUGAGCCUCACCUGGAGCACCA [13] tRX-Ile-NNN-52 -GCUGCAGUGGCGUAACC-GGUC-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [14] tRX-Ile-NNN-58 -GCUGCAGUGGCGUAACC-GGUC-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCAAGCCUCACCUGGAGCACCA [15] tRX-Ile-NNN-60 -GCUCCAGUGGCGCAAUC-GGUC-AGCGCGUGGUACUUAUACUCCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [16] tRX-Ile-NNN-61 -GCUCCAGUGGUGCAAUC-GGUC-AGCCCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [17] tRX-Ile-NNN-62 -GCUCCAGUGGCGCAAUU-GGUC-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUUAGUUAGAGCCUCACCUGGAGCACCA [18] tRX-Ile-NNN-68 -GCUCCAGUGGCGCAAUC-GGUC-AGCGCGCGGUACUUAUAAUGCC-AGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [19] tRX-Ile-NNN-69 -GCUCCAGUGGCGUAAUU-GGUC-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUCCGAGCCUCACCUGGAGCACCA [20] tRX-Ile-NNN-72 -ACUCCAGUGGUGCAAUU-GGUU-AACACGUGGUACUUAUAAUGCCGUGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [21] tRX-Ile-NNN-77 -GCUCCAGUGGCGCUAUC-GGUC-AGUGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [22] tRX-Ile-NNN-80 -GCUCCAGUGGCGCAAUU-GGUC-AGCGCACGGAACUUAUAAUACUGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [23] tRX-Ile-NNN-96 -GCUUCAGUGGCGUAAUC-GGUC-AGCGUGUGGUACUUAUAAUGCUGAGGUUGUGAGUUCAAGCCUCACCUGGAGCACCA [24] tRX-Ile-NNN-97 -GCUCCAGUGGCGCAAUC-GAUC-AACGCGCGGUACUUAUAAUGCCGAGGUUGAGAGUUCGAGCCUCACCUGGAGCACCA [25] tRNA-Ile-TAT-1 -GCUCCAGUGGCGCAAUC-GGUU-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [26] tRNA-Ile-TAT-2 -GCUCCAGUGGCGCAGUC-GGUC-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [27] tRNA-Ile-TAT-3 -GCUCCAGUGGCGCAAUU-GGUC-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [28] tRNA-Ile-TAT-5 -GCUCCAGUGGCGCAAUC-GGUC-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [29] tRNA-Ile-TAT-6 -GCUCCAGUGGCGCAAUC-GGUU-AGCGCGCGGUACUUAUAUUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [30] tRNA-Ile-TAT-7 -GCUCCAGUGGCGCAAUC-GGUC-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCAAGCCUCACCUGGAGCACCA [31] tRNA-Ile-TAT-11 -GCUCCAGUGGCGCAAUC-GGUC-AGCGCGUGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [32] tRNA-Ile-TAT-13 -GCUCCAGUGGCGCAAUC-GGUC-AGCGCACGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [33] tRNA-Ile-TAT-15 -GCUCCAGUGGCGCAAUC-GGUC-AGCGUGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [34] tRNA-Ile-TAT-16 -GCUCUAGUGGCGCAAUC-GGUC-AGCGCGUGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [35] tRNA-Ile-TAT-17 -GCUCCAGUGGCGUAAUU-GGUC-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [36] tRNA-Ile-TAT-18 -GCUCCAGUGGCGCAAUU-GGUC-AGUGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [37] tRNA-Ile-TAT-21 -GCUCCAGUGGCGCAAUC-GGUC-AGCGCGCGGUUCUUAUAAUGCCGAGGUUGUGAGUUCAAGCCUCACCUGGAGCACCA [38] tRNA-Ile-TAT-24 -GCUCCAGUGGCGCAAUC-GGUC-AGCGCGCGGUACUUAUAAUGCUGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [39] tRNA-Ile-TAT-25 -GCUCCAGUGGCGCAAUC-GGUC-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUUGAGCCUCACCUGGAGCACCA [40] tRNA-Ile-TAT-26 -GCUCCAGUGGCGCAAUC-GGUC-AGCGUGUGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [41] tRNA-Ile-TAT-27 -GCUCCAGUGGCGUAAUC-GGUC-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [42] tRNA-Ile-TAT-29 -GCUCCAGUGGCGCAAUC-GGUC-AGCGCGUGGUACUUAUAAUGCUGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [43] tRNA-Ile-TAT-30 -GCUCCAGUGGCGCAAUC-GGUC-AGCGCGCGGUACUUAUAAUGUCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [44] 3006 ..............................................................GCCUCACCUGGAGCACCA [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 51: 3010 Fragment Coverage tRX-Gly-NNN-189:TLE_Z tRNA-Gly-GCC-44:TLE_Z tRNA-Gly-GCC-35:TLE_Z Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-GCC-35 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCAUGCGGGAGA-CCCGGGUCCGUUUCCCGGCCAAUGCACCA [1] tRNA-Gly-GCC-44 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGA-CCCGGGUCCGUUUCCCGGCCAAUGCACCA [2] tRX-Gly-NNN-189 -GCAUUGGUGGUUCAGU--GGU--AGACUUCUUGCCUCCCACGCAGGAGA-UCCGGGUCCGUUUCCCGGCCAAUGCACCA [3] 3010 ...........................................................CGUUUCCCGGCCAAUGCACCA [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Singleton 52: 5059