Fragment Cluster 1: 1010,1012 Fragment Coverage tRX-Thr-NNN-32-3: tRX-Thr-NNN-32-5: tRX-Thr-NNN-210-2: tRX-Thr-NNN-210-1: tRNA-Thr-AGT-4-5: tRX-Thr-NNN-19-1: tRNA-Thr-AGT-20-1: tRNA-Thr-AGT-20-2: tRNA-Thr-AGT-20-3: tRX-Thr-NNN-34-1: tRX-Thr-NNN-34-3: tRX-Thr-NNN-34-2: tRX-Thr-NNN-76-1: tRX-Thr-NNN-33-1: tRX-Thr-NNN-211-1: tRNA-Ser-AGA-177-1: tRNA-Thr-AGT-7-18: tRX-Thr-NNN-32-6: tRNA-Thr-AGT-7-74: tRX-Thr-NNN-25-1: tRX-Thr-NNN-144-2: tRX-Thr-NNN-144-1: tRNA-Thr-AGT-31-1: tRNA-Thr-AGT-18-9: tRNA-Thr-AGT-18-7: tRNA-Thr-AGT-18-6: tRX-Thr-NNN-40-1: tRNA-Thr-AGT-7-27: tRNA-Thr-AGT-7-24: tRX-Thr-NNN-69-1: tRX-Thr-NNN-55-1: tRNA-Thr-TGT-1-1: tRX-Thr-NNN-4-1: tRX-Thr-NNN-7-1: tRNA-Thr-CGT-1-5: tRNA-Thr-AGT-11-1: tRNA-Thr-AGT-7-4: tRNA-Thr-AGT-7-5: tRNA-Thr-AGT-7-6: tRNA-Thr-AGT-19-1: tRNA-Thr-AGT-19-2: tRNA-Thr-AGT-19-3: tRX-Thr-NNN-80-1: tRX-Thr-NNN-83-1: tRX-Thr-NNN-158-1: tRX-Thr-NNN-10-1: tRNA-Thr-AGT-21-1: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-AGA-177-1 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGCUCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGAAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGGGUUUACGC [1] tRNA-Thr-AGT-4-5 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUUCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [2] tRNA-Thr-AGT-7-4 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [3] tRNA-Thr-AGT-7-5 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCUUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [4] tRNA-Thr-AGT-7-6 UCUUUUUUUAGUCUCUGUGUGCAAAUACAACUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [5] tRNA-Thr-AGT-7-18 UCUUUUUUUAGUCUCUGUCUGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [6] tRNA-Thr-AGT-7-24 UCUUUUUUUAGUCUCUGUCUGCAAAAACGUCUUGCCUCUUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [7] tRNA-Thr-AGT-7-27 UCUUUUUUUAGUCUCUGUCUGCAAAAACGUCUUGCUUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [8] tRNA-Thr-AGT-7-74 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [9] tRNA-Thr-AGT-11-1 UCUUUUUUUAGUCUCUGUGUGCAAAAACAUCUUGCCUACUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUUUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [10] tRNA-Thr-AGT-18-6 UCUUUUUUUAGUCUCUGUCUGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUAUG [11] tRNA-Thr-AGT-18-7 UCUUUUUUUAGUCUCUGUCUGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUAUG [12] tRNA-Thr-AGT-18-9 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [13] tRNA-Thr-AGT-19-1 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUAGUAAACAGGAGGUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [14] tRNA-Thr-AGT-19-2 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUAGUAAACAGGAGGUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [15] tRNA-Thr-AGT-19-3 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCAUUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUAGUAAACAGGAGGUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [16] tRNA-Thr-AGT-20-1 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGUGUUGGCUCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [17] tRNA-Thr-AGT-20-2 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUUUUGCCUCCUACUCAGCGUUGGCUCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAUUAACGAGUGUUUACGC [18] tRNA-Thr-AGT-20-3 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGUGUUGGCUCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACAAGUGUUUACGC [19] tRNA-Thr-AGT-21-1 UCUUUUUUUAGUCUCUGUGUGCAAAAACAUCUUGCCUACUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGGC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [20] tRNA-Thr-AGT-31-1 UCUUUUUUUAGUCUCUGUCUGCAAAAACGUCUUGCGUCCUAUUCAGCGUUGGCGUUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUAUG [21] tRNA-Thr-CGT-1-5 UCUUUUUUUAGUCUCUGUGUCCAAAUACGUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUCGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [22] tRX-Thr-NNN-4-1 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUAGUAAACAGGAGGUCCUGGGUUCAAGUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUUUUAAGAGUAACGAGUGUUUACGC [23] tRX-Thr-NNN-7-1 GUCUAGUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCUUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [24] tRX-Thr-NNN-10-1 UCUUUUUUUAGUCUCUGUCUGCAAAAACAUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUAGUGAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUAUG [25] tRX-Thr-NNN-19-1 CUUCUUCGAUUUUUGUUGUCGGGCAAAUGUCUCUUAAUGUGAAUUUCUGUGGCACUGUGGCUUAGCU-GGUC-AAAGUGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [26] tRX-Thr-NNN-25-1 UCUUUUUUUAGUCUCUGUGUGCAAAUACGUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCAAAUCCCAUCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [27] tRX-Thr-NNN-32-3 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCAUUGGCGCUGUGGCUUAGUU-GGUC-AACGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [28] tRX-Thr-NNN-32-5 UCUUUUUUUAGUCUCUGUGCGCAAAAACGUCUUGCCUCCUAUUCAGCAUUGGCGCUGUGGCUUAGUU-GGUC-AACGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [29] tRX-Thr-NNN-32-6 UCUUUUUUUAGUCUCUGUGCGCAAAAACGUCUUGCCUCCUAUUCAGCAUUGGCGCUGUGGCUUAGUU-GGUC-AACGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [30] tRX-Thr-NNN-33-1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCGUUGGCUCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUACACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGNNNNNNNNNNNNNNNN [31] tRX-Thr-NNN-34-1 UUUAUUUUUAUUUUUUGGAAUUAAACAUUUAGCCUGUGUCGAGGUCGUUUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUAGUAAACAGGAGAUCCUGGGUUUAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [32] tRX-Thr-NNN-34-2 UUUAUUUUUAUUUUUUGGAAUUAAACAUUUAGCCUGUGUCGAGGUCGUUUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUAGUAAACAGGAGAUCCUGGGUUUAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [33] tRX-Thr-NNN-34-3 UUUAUUUUUAUUUUUUGGAAUUAAACAUUUAGCCUGUGUCGAGGUCGUUUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUAGUAAACAGGAGAUCCUGGGUUUAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGUGUUUACGCA [34] tRX-Thr-NNN-40-1 UCUUUUUUUAGUCUCUGUGUGCAAGAACGUCUUGCCUCCUAAUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCAUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [35] tRX-Thr-NNN-55-1 GUCUUUUUAAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCAUUGGCGCUGUGGCUUAGUU-GGUC-AACGCACCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [36] tRX-Thr-NNN-69-1 UCUUUUUUUAGUAUCUGUGUGCAAAAACGUCUUGCCAACUAUUCAGCGUUGGCGCUGUGACUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [37] tRX-Thr-NNN-76-1 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUACCUCCUAUUCAGCAUUGGCGCUGUGGCUUAGUU-GGUC-AACGCGCCUGUCUAGUAAACAGGAGAUUCUGGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [38] tRX-Thr-NNN-80-1 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUUAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUUCUGGAUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUAUG [39] tRX-Thr-NNN-83-1 UCUUUUUUUAGUCUCUGUGAGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGUGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAAUAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCUUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [40] tRX-Thr-NNN-144-1 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GUUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGUUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [41] tRX-Thr-NNN-144-2 NNNNNNNNNNNNCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GUUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGUUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [42] tRX-Thr-NNN-158-1 UCUUUUUUUAGUCUCUGUGUGCAAAAACAUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCUUGGGUUCAAAUCCCAGCAGUUCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGUGUUUACGC [43] tRX-Thr-NNN-210-1 GUCUUUUUAAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCAUUGGCGCUGUGGCUUAGUU-GGGC-AACGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAUAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [44] tRX-Thr-NNN-210-2 GUCUUUUUAAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCAUUGGCGCUGUGGCUUAGUU-GGGC-AACGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAUAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUACG [45] tRX-Thr-NNN-211-1 UCUUUUUUUAGUCUCUGUCUGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUAGUGAACAGGAGAUCCUCGGUUCAAAUCCCAGCAGUGCCUAAUGUACAGGUUUCGUGUUUGCUUUUUGUUAAGAGUAACGAGUGUUUAUG [46] tRNA-Thr-TGT-1-1 UCUUUUUUUAGUCUCUGUGUGCAAAUACGUCUUACCUCCUAUUCAGCGUUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUAUGUACAGGUUUCGUGUUUGCUUUUGUUAAGAGUAACGAGGGUUUACGC [47] 1012 ..............................................................................................................................AAUGUACAGGUUUCGUGUUU.............................. [5,6,7,8,11,12,21,22,25,26,27,28,29,30,32,33,34,36,38,40,44,45,46] 1010 ...............................................................................................................................AUGUACAGGUUUCGUGUUUGCUUU......................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 2: 1001 Fragment Coverage tRNA-Thr-TGT-10-1: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-TGT-10-1 UGUAAAGAAUCCCAUUCUCUGUCUUGUAAAAGUUGAUUGACAUUGUGCCUGGCUCCAUAGCUCAGU--GGUU-AGAGCACUGGUCUUGUAAACCAGGGGUCGUGAGUUCAAUCCUCACUGGGGCCUGAAGAACAUGGUCAAAUUGCUUUUGAUAAGUUCUCAAAAUUAUUGUCUCC [1] 1001 ..............................................................................................................................GAAGAACAUGGUCAAAUUGCUUU........................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 3: 1002 Fragment Coverage tRNA-Thr-TGT-8-3: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-TGT-8-3 GUUGUGUGCUACGUUUCAUAUGCUAAUCAAGACAAUCCCUGAACAGGUCUGGCUCCAUAGCUCAGU--GGUU-AGAGCACUGGUCUUGUAAACCAGGGGUCGCGAGUUCGAUCCUCGCUGGGGCCUGCAGGAAACUUCGAAGAUACUUUUAUAAUUUAUAGUAAAACACACAAGGU [1] 1002 ..............................................................................................................................GCAGGAAACUUCGAAGAUACUUU........................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 4: 1003 Fragment Coverage tRNA-Thr-TGT-8-5: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-TGT-8-5 CUUCAUGUUUAUGGUUAAAAUCAAUUUAUUCCACGCUGAAAAACACAGCUGGCUCCAUAGCUCAGU--GGUU-AGAGCACUGGUCUUGUAAACCAGGGGUCGCGAGUUCGAUCCUCGCUGGGGCCUGCCGAGAUGGGUACAUUUUUUUUUUAUCCAAAAAAGAAAUUGUCUCCCAC [1] 1003 ..............................................................................................................................GCCGAGAUGGGUACAUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 5: 1004 Fragment Coverage tRNA-Thr-TGT-8-6: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-TGT-8-6 GAGAAGCUUUGUCAUUCAAAACUGCAGCUAAGAGCAGAUGGAAGACAGCUGGCUCCAUAGCUCAGU--GGUU-AGAGCACUGGUCUUGUAAACCAGGGGUCGCGAGUUCGAUCCUCGCUGGGGCCUGUGGGUGUUAAUAAUCAUUUAGUAUUAAAGAAUAUACAUACAUACAAAUC [1] 1004 ..............................................................................................................................GUGGGUGUUAAUAAUCAUUU.............................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 6: 1005 Fragment Coverage tRX-Ala-NNN-11-12: tRX-Ala-NNN-11-13: tRX-Ala-NNN-11-11: tRX-Ala-NNN-11-4: tRX-Ala-NNN-11-5: tRX-Ala-NNN-11-6: tRX-Ala-NNN-11-7: tRX-Ala-NNN-11-8: tRX-Ala-NNN-11-9: tRX-Ala-NNN-14-1: tRX-Ala-NNN-14-3: tRX-Ala-NNN-14-2: tRX-Ala-NNN-11-10: tRX-Ala-NNN-22-1: Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRX-Ala-NNN-11-4 UUUUUUUAUUUUUUGAUUACGUCGAAAAUAGCCAAAUUUUUUUCCAGCAAGGGGAAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACAUGAAUCUCCGCAUCUGUUUUCAUGCGUUUCACACUGGCUUUCAUUGCA [1] tRX-Ala-NNN-11-5 UUUUUUAUUUUUUGAUUACGUCGAAAAUAGCCAAAUUUUUUUCCCAGCAAGGGGAAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACAUGAAUCUCCGCAUCUGUUUUCAUGCCUUUCACACUGGCUUUCAUUGCA [2] tRX-Ala-NNN-11-6 UUUUUUUCUUUUUUGAUUACGUCAAAAAUAGCCAAAUUUUUUUCCAGCGAGGGGAAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACAUGAAUCUCCGCAUCUGUUUUCAUGCCUUUCACACUGGCUUUCAUUGCA [3] tRX-Ala-NNN-11-7 UUUUUUUCUUUUUUGAUUACGUCAAAAAUAGCCAAAUUUUUUUCCAGCGAGGGGAAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACAUGAAUCUCCGCAUCUGUUUUCAUGCCUUUCACACUGGCUUUCAUUGCA [4] tRX-Ala-NNN-11-8 UUUUUUUCUUUUUUGAUUACGUCAAAAAUAGCCAAAUUUUUGUCCAUCGAGGGGAAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACAUGAAUCUCCGCAUCUGUUUUCAUGCCUUUCACACUGGCUUUCAUUGCA [5] tRX-Ala-NNN-11-9 UUUUUUUCUUUUUUGAUUACGUCAAAAAUAGCCAAAUUUUUUUCCAGCGAGGGGAAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACAUGAAUCUCCGCAUCUGUUUUCAUGCCUUUCACACUGGCUUUCAUUGCA [6] tRX-Ala-NNN-11-10 UUUUUUUCUUUUUUGAUUACGUCAAAAAUAGCCAAAUUUUUUUCCAGCGAGGGGAAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACAUGAAUCUCCGCAUCUGUUUUCAUGCCUUUCACACUGGCUUUCAUUGCA [7] tRX-Ala-NNN-11-11 UUUUUUUCUUUUUUGAUUACGUCAAAAAUAGCCAAAUUUUUUUCCAGUGAGGGGAAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACAUGAAUCUCCGCAUCUGUUUUCAUGCCUUUCACACUGGCUUUCAUUGCA [8] tRX-Ala-NNN-11-12 UUUUUUUCUUUUUUGAUUACGUCAAAAAUAGCCAAAUUUUUUUCCAGCGAGGGGAAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACAUGAAUCUCCGCAUCUGUUUUCAUGCCUUUCACACUGGCUUUCAUUGCA [9] tRX-Ala-NNN-11-13 UUUUUUUCUUUUUUGAUUACGUCAAAAAUAGCCAAAUUUUUUUCCAGCGAGGGGAAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACAUGAAUCUCCGCAUCUGUUUUCAUGCCUUUCACACUGGCUUUCAUUGCA [10] tRX-Ala-NNN-14-1 UUUUUUUCUUUUUUGAUUACGUCAAAAAUAGCCAAAUUUUUUUCCAGCGAGGGGAAUUAGCUCAAAU-GGU--AGAGCACUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACAUGAAUCUCCGCAUCUGUUUUCAUGCCUUUCACACUGGCUUUCAUUGCA [11] tRX-Ala-NNN-14-2 UUUUUUUCUUUUUUGAUUACGUCAAAAAUAGCCAAAUUUUUUUCCAGCGAGGGGAAUUAGCUCAAAU-GGU--AGAGCACUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACAUGAAUCUCCGCAUCUGUUUUCAUGCCUUUCACACUGGCUUUCAUUGCA [12] tRX-Ala-NNN-14-3 UUUUUUUCUUUUUUGAUUACGUCAAAAAUAGCCAAAUUUUUUUCCAGCGAGGGGAAUUAGCUCAAAU-GGU--AGAGCACUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACAUGAAUCUCCGCAUCUGUUUUCAUGCCUUUCACACUGGCUUUCAUUGCA [13] tRX-Ala-NNN-22-1 UUUUUUUCUUUUUUGAUUACGUCAAAAAUAGCCAAAUUUUUUUCCAGCGAGGGGAAUUAGCUCAAAU-GGU--AGAGCGCUUGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCACAUGAAUCUCCGCAUCUGUUUUCAUGCCUUUCACACUGGCUUUCAUUGCA [14] 1005 ...............................................................................................................................AUGAAUCUCCGCAUCUGUUU............................. [1,2,3,4,5,6,7,8,9,10,11,12,13,14] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 7: 1006 Fragment Coverage tRX-Thr-NNN-179-2: tRX-Thr-NNN-79-1: tRX-Thr-NNN-116-1: tRX-Thr-NNN-90-12: tRX-Thr-NNN-90-11: tRX-Thr-NNN-90-15: tRX-Thr-NNN-90-14: tRX-Thr-NNN-90-18: tRX-Thr-NNN-188-1: tRX-Thr-NNN-178-1: tRX-Thr-NNN-182-1: tRX-Thr-NNN-90-48: tRX-Thr-NNN-90-49: tRX-Thr-NNN-90-40: tRX-Thr-NNN-90-41: tRX-Thr-NNN-90-42: tRX-Thr-NNN-90-43: tRX-Thr-NNN-90-45: tRX-Thr-NNN-90-46: tRX-Thr-NNN-90-7: tRX-Thr-NNN-90-3: tRX-Thr-NNN-90-2: tRX-Thr-NNN-90-9: tRX-Thr-NNN-98-1: tRX-Thr-NNN-181-1: tRX-Thr-NNN-95-2: tRX-Thr-NNN-95-1: tRX-Thr-NNN-128-10: tRX-Thr-NNN-161-1: tRX-Thr-NNN-122-2: tRX-Thr-NNN-122-3: tRX-Thr-NNN-122-1: tRX-Thr-NNN-121-1: tRX-Thr-NNN-121-2: tRX-Thr-NNN-207-1: tRX-Thr-NNN-90-39: tRX-Thr-NNN-90-38: tRX-Thr-NNN-90-35: tRX-Thr-NNN-90-37: tRX-Thr-NNN-90-36: tRX-Thr-NNN-90-31: tRX-Thr-NNN-90-33: tRX-Thr-NNN-90-32: tRX-Thr-NNN-164-1: tRX-Thr-NNN-164-2: tRX-Thr-NNN-128-9: tRX-Thr-NNN-128-5: tRX-Thr-NNN-128-6: tRX-Thr-NNN-128-7: tRX-Thr-NNN-204-1: tRX-Thr-NNN-194-1: tRX-Thr-NNN-90-60: tRX-Thr-NNN-90-61: tRX-Thr-NNN-90-64: tRX-Thr-NNN-90-65: tRX-Thr-NNN-191-2: tRX-Thr-NNN-84-1: tRX-Thr-NNN-90-29: tRX-Thr-NNN-131-3: tRX-Thr-NNN-131-1: tRX-Thr-NNN-139-2: tRX-Thr-NNN-139-3: tRX-Thr-NNN-139-1: tRX-Thr-NNN-90-52: tRX-Thr-NNN-90-57: tRX-Thr-NNN-90-55: tRX-Thr-NNN-90-54: tRX-Thr-NNN-90-50: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRX-Thr-NNN-79-1 CUUCUUCGAUUUUUGUUAUUGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGUGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUGGAGCUCACCGGAAUGAAUU [1] tRX-Thr-NNN-84-1 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGAUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAAU [2] tRX-Thr-NNN-90-2 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUGGAGCUCACCGGAAUGAAUU [3] tRX-Thr-NNN-90-3 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUGGAGCUCACCGGAAUGAAUU [4] tRX-Thr-NNN-90-7 UCUUCUUGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGCGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [5] tRX-Thr-NNN-90-9 UUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCAUCGGAAUGAAUU [6] tRX-Thr-NNN-90-11 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGCGAAUUUCCGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUGGAGCUCACCGGAAUGAAUU [7] tRX-Thr-NNN-90-12 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUGGAGCUCAACGGAAUGAUAU [8] tRX-Thr-NNN-90-14 CUCCUUUGAUUUUUGUUAUUGGGCAAAUGUUUCUAACAGUGAUUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAUAGCUUGCCGGAUCGAAUU [9] tRX-Thr-NNN-90-15 CUCCUUUGAUUUUUGUUAUUGGGCAAAUGUUUCUAACAGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAUAGCUUGCCGGAUCGAAUU [10] tRX-Thr-NNN-90-18 UCUUCUUGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGCGAAGUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [11] tRX-Thr-NNN-90-29 CUCCUUUGAUUUUUGUUAUUGGGCAAAUGUUUCUAACAGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAUAGCUUGCCGGAUCGAAUU [12] tRX-Thr-NNN-90-31 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [13] tRX-Thr-NNN-90-32 CUUCUUCGAUUUUUGUUAUUGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [14] tRX-Thr-NNN-90-33 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAAUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [15] tRX-Thr-NNN-90-35 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [16] tRX-Thr-NNN-90-36 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [17] tRX-Thr-NNN-90-37 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [18] tRX-Thr-NNN-90-38 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [19] tRX-Thr-NNN-90-39 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [20] tRX-Thr-NNN-90-40 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACUGGAAUGAAUU [21] tRX-Thr-NNN-90-41 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAAUACUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUAAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [22] tRX-Thr-NNN-90-42 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGCGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACUGGAAUGAAUU [23] tRX-Thr-NNN-90-43 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGCGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [24] tRX-Thr-NNN-90-45 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [25] tRX-Thr-NNN-90-46 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [26] tRX-Thr-NNN-90-48 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [27] tRX-Thr-NNN-90-49 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [28] tRX-Thr-NNN-90-50 CUUCUUCGAUUUUUGUUAUCAGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUUAAUU [29] tRX-Thr-NNN-90-52 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGCGAAUUUCCGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [30] tRX-Thr-NNN-90-54 NNNNNNNNNNNUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [31] tRX-Thr-NNN-90-55 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [32] tRX-Thr-NNN-90-57 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUAUAUGUUUUUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUUUAGAGCUUACCGGAAUUAAUU [33] tRX-Thr-NNN-90-60 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUGGAGCUCACCGGAAUGAAUU [34] tRX-Thr-NNN-90-61 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUGGAGCUCACCGGAAUGAAUU [35] tRX-Thr-NNN-90-64 CUUCUUCGAUUUUUGUUAUCGGGCAACUGUCUCUUCUUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [36] tRX-Thr-NNN-90-65 CUUCUUCGAUUUUUGUUAUCAGGCAAAUGUCUCUUCUUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [37] tRX-Thr-NNN-95-1 CUUCUUCGAUUUUUGUUAUCGGACUAAUGUCUCUUACUGCGAAGUUUUGUGGCGCUGUGGCUUAGCU-GGUA-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCUCCGGAAUGAAUU [38] tRX-Thr-NNN-95-2 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUAUAUGUUUUUGUGGCGCUGUGGCUUAGCU-GGUA-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUUUAGAGCUUACCGGAAUGAAUU [39] tRX-Thr-NNN-98-1 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCGGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [40] tRX-Thr-NNN-116-1 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGUUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUAAAUU [41] tRX-Thr-NNN-121-1 UCUUCUUGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGCGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUUCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [42] tRX-Thr-NNN-121-2 CUUCUUCGAUUUUUAUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUUCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [43] tRX-Thr-NNN-122-1 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGCGAAUAUCUGUGGCGCUGUGGCUUAGCU-GGUG-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [44] tRX-Thr-NNN-122-2 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUGUUACUGCGAACUUCUGUGGCGCUGUGGCUUAGCU-GGUG-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [45] tRX-Thr-NNN-122-3 UCUUCUUGAUUUUUGUUAUCGGGCAAAUGUCUGUUACUGCGAGCUUCUGUGGCGCUGUGGCUUAGCU-GGUG-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [46] tRX-Thr-NNN-128-5 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGUGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGACCGGUUCGGAUGUUUUG [47] tRX-Thr-NNN-128-6 CUUCUUCAAUUUUUGUUAUCCGGCAAAUGUCUCUUAGUGUGAAUUUUUGUGGUGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUUACCGGAAUGAAUU [48] tRX-Thr-NNN-128-7 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGUGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [49] tRX-Thr-NNN-128-9 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGUGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [50] tRX-Thr-NNN-128-10 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUCUUCUGAAUUUCUGUGGUGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACUGGAAUGAAUU [51] tRX-Thr-NNN-131-1 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGUGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [52] tRX-Thr-NNN-131-3 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUCUUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGUGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [53] tRX-Thr-NNN-139-1 UCUUCUUGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGCGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGGC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [54] tRX-Thr-NNN-139-2 UCUUCUUGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGCAAAUUUCUGUGGCGCUGUGGCUUAGCU-GGGC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [55] tRX-Thr-NNN-139-3 UCUUCUUGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGCGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGGC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [56] tRX-Thr-NNN-161-1 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUAUGAAUAUUUGUGGUGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGCCUUGUAAACAGGAGAUCCUGGGAUCAAAUCCCAGCAGCGCCAUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUUACCGGCAUGAAUU [57] tRX-Thr-NNN-164-1 CUUCUUCGAUUUUUGUUAUAGGGCAAAUGUCUCUUACUUCGAAUUUCUGUGGCGCUGUGGCUUAGUU-GGUG-AAAGCGCCUGCCUUGUAAACAGGAGAUCCUGGGCUCAAGUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [58] tRX-Thr-NNN-164-2 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUACGAAUUUCUGUGGCGCUGUGGCUUAGUU-GGUG-AAAGCGCCUGCCUUGUAAACAGGAGAUCCUGGGCUCAAGUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [59] tRX-Thr-NNN-178-1 CUUCUUCGAUUUUUGUUAUCGGGUAAAUGUUUCUUACUAUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCUUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUCAUAGAGCUCACCCGAAUGAAUU [60] tRX-Thr-NNN-179-2 CUUCUUCGAUUUUUGUUGUCGGGCAAAUGUCUCUUCUUGUGAAUUUCUGUGGUGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGCCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [61] tRX-Thr-NNN-181-1 CCUUUAUGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGUGUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGUGCCUGCCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [62] tRX-Thr-NNN-182-1 UCUUCUUGAUUUUUGUUAUCGGGCAAAUGUCUGUUACUGCGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAACCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [63] tRX-Thr-NNN-188-1 CUUCUUUGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUUGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUUAAUU [64] tRX-Thr-NNN-191-2 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAAUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUUCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [65] tRX-Thr-NNN-194-1 CUUCUUCGAUUUUUGUUAUCGGGCAAAUGUCUCUUACUGUGAGUUUCUGUGGCACUGUGGCUUAGCU-GGUC-AAAGCACCUGUCUUGUAAACAGGAGAUCCUGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [66] tRX-Thr-NNN-204-1 GGGCCUAGUGGGCUUGAGGAAUGACUCAAAGGCAACCUGUGGUUUUCUGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCCGGGCUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUUACCGGAAUGAAUU [67] tRX-Thr-NNN-207-1 CUUCUUCGAUUUUUGUUAUCAGGCAAAUGUCUCUUACUGUGAAUUUCCGUGGCGCUGUGGCUUAGCU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGACUCAAAUCCCAGCAGCGCCUUAGUCCAGGUGGUGCGUGUGCUUGUUUUAUAGAGCUCACCGGAAUGAAUU [68] 1006 ...............................................................................................................................AGUCCAGGUGGUGCGUGUGCUUGUUU....................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 8: 1007 Fragment Coverage tRX-Thr-NNN-31-1: tRX-Thr-NNN-31-2: tRX-Thr-NNN-112-1: tRX-Thr-NNN-72-4: tRX-Thr-NNN-72-3: tRX-Thr-NNN-72-2: tRX-Thr-NNN-72-1: tRX-Thr-NNN-12-1: tRNA-Thr-AGT-7-58: tRNA-Thr-AGT-7-52: tRNA-Thr-AGT-7-51: tRNA-Thr-AGT-7-57: tRNA-Thr-AGT-7-54: tRNA-Thr-AGT-7-55: tRNA-Thr-AGT-7-70: tRNA-Thr-TGT-2-1: tRX-Thr-NNN-91-1: tRNA-Thr-AGT-7-66: tRNA-Thr-AGT-7-60: tRNA-Thr-TGT-1-7: tRX-Thr-NNN-27-1: tRNA-Thr-TGT-5-2: tRNA-Thr-AGT-16-4: tRX-Thr-NNN-61-1: tRNA-Thr-TGT-4-1: tRNA-Thr-AGT-7-48: tRX-Thr-NNN-132-1: tRX-Thr-NNN-17-3: tRX-Thr-NNN-14-2: tRX-Thr-NNN-14-1: tRX-Thr-NNN-13-1: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-AGT-7-48 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGGCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGGGACUACCAAAAAUUACUU [1] tRNA-Thr-AGT-7-51 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGUCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCAAAAAUUACUU [2] tRNA-Thr-AGT-7-52 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGACAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCAAAAAUUACUU [3] tRNA-Thr-AGT-7-54 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGUCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCAAAAAUUACUU [4] tRNA-Thr-AGT-7-55 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCCUACAGUUAAAUUUAGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCAAAAAUUACUU [5] tRNA-Thr-AGT-7-57 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGUCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCAAAAAUUACUU [6] tRNA-Thr-AGT-7-58 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCCUACAGUUAAAUUUAGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCAAAAAUUACUU [7] tRNA-Thr-AGT-7-60 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGGCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUNNNNNNNNNNNNNN [8] tRNA-Thr-AGT-7-66 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGGCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCAAAAAUUACUU [9] tRNA-Thr-AGT-7-70 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGUCAAUAUUAGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCAAAAAUUACUU [10] tRNA-Thr-AGT-16-4 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGGCAAUUUUUGUGGUGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCAAAAAUUACUU [11] tRX-Thr-NNN-12-1 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGUCAAUUUUUGUGGUGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCAAAAAUUACUU [12] tRX-Thr-NNN-13-1 CUUCUUCGAUUUUUGUUAUCAGGCAAAUUUCUCCUACAGUUAAAUUUAGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUUGUAAACAGGACAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [13] tRX-Thr-NNN-14-1 CUUCUUCGAUUUUUGUUAUCAGGCAAAUUUCUCCUACGGUUAAAUUUAGUGGCGCUGUGGCUUAGUC-GGUC-AAAGCGCCUGUCUUGUAAACAGGACAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [14] tRX-Thr-NNN-14-2 CUUCUUCGAUUUUUGUUAUCAGGCAAAUUUCUCCUACGGUUAAAUUUAGUGGCGCUGUGGCUUAGUC-GGUC-AAAGCGCCUGUCUUGUAAACAGGACAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [15] tRX-Thr-NNN-17-3 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGUCAAUUUUUGUGGAGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCAAAAAUUACUU [16] tRX-Thr-NNN-27-1 CUUCUUCGAUUUUUGUUAUCAGGCAAAUUUCUCCUACAGUUAAAUUUACUGGCGCUGAGGCUUAGUU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [17] tRX-Thr-NNN-31-1 CUUCUUCGAUUUUUGUUAUCAGGCAAAUUUCUCCUACAGUUAAAUUUAGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCACCUGUCUUGUAAACAGGACAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [18] tRX-Thr-NNN-31-2 CUUCUUCGAUUUUUGUUAUCAGGCAAAUUUCUCCUACAGUUAAAUUUAGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCACCUGUCUUGUAAACAGGACAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [19] tRX-Thr-NNN-61-1 CUUCUUCGAUUUUUGUUAUUAGGCAAAUUUCUCCUACAGUUAAAUUUACUGGCGAUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [20] tRX-Thr-NNN-72-1 CUUCUUCGAUUUUUGUUAUGAGGCAAAUGUCUCCUACAGUUAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUCCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [21] tRX-Thr-NNN-72-2 CUUCUUCGAUUUUUGUUAUCAGGCAAAUGUCUCCUACAGUUAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUCCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [22] tRX-Thr-NNN-72-3 NNNNNNNNAUUUUUGUUAUGAGGCAAAUGUCUCCUACAGUUAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUCCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [23] tRX-Thr-NNN-72-4 CUUCUUCGAUUUUUGUUAUCAGGCAAAUGUCUCCUACAGUUAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUCCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [24] tRX-Thr-NNN-91-1 CUUCUUCGAUUUUUGUUAUCAGGCAAAUGUUUCUUACGGUCAAAUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCAUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCAAAAAUUACUU [25] tRX-Thr-NNN-112-1 CUUCUUCGAUUUUUGUUAUCAGGCAAAUGUCUCCUACAGUUAAUUUUUGUGGUGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUCCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [26] tRX-Thr-NNN-132-1 CUUCUUCGAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGUCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCAUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCAAAAAUUACUU [27] tRNA-Thr-TGT-1-7 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGUCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCAAAAAUUACUU [28] tRNA-Thr-TGT-2-1 NNNNNNNNAUUUUUGUUAUCAGGCAAAUUUCUCCUACAGUUAAAUUUAGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCACCUGUCUUGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCAAAAAUUACUU [29] tRNA-Thr-TGT-4-1 CUUCUUCGAUUUUUGUUAUCAGGCAAAUGUCUCCUACAGUUAAUUUUUGUGGUGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [30] tRNA-Thr-TGT-5-2 CUUCUUCGAUUUUUGUUAUCAGGCAAAUGUCUCCUACAGUUAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUACGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [31] 1007 ...............................................................................................................................GUACGCAGUUGGCUGGCUUU............................. [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 9: 1008 Fragment Coverage tRX-Thr-NNN-63-1: tRX-Thr-NNN-63-2: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRX-Thr-NNN-63-1 UGACAUGCUGGUUUUUGUUGUGUAUUAGUUUUUUCUUCUUCGAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUUGUAAACAGGACAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUAUGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [1] tRX-Thr-NNN-63-2 UGACAUGCUGGUUUUUGUUGUGUAUUAGUUUUUUCUUCUUCGAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUUGUAAACAGGACAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUAUGCAGUUGGCUGGCUUUUAUGGGCCAGAGACUACCUAAAAUUACUU [2] 1008 ...............................................................................................................................GUAUGCAGUUGGCUGGCUUU............................. [1,2] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 10: 1009 Fragment Coverage tRNA-Thr-AGT-7-59: tRNA-Thr-AGT-7-53: tRNA-Thr-AGT-7-56: tRNA-Thr-AGT-7-71: tRX-Thr-NNN-91-2: tRNA-Thr-AGT-7-69: tRNA-Thr-AGT-7-65: tRNA-Thr-AGT-7-64: tRNA-Thr-AGT-7-63: tRNA-Thr-AGT-7-61: tRNA-Thr-AGT-10-1: tRNA-Thr-TGT-5-1: tRNA-Thr-AGT-7-49: tRNA-Thr-AGT-7-47: tRNA-Thr-AGT-7-46: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-AGT-7-46 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGUCAAUUUCUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGGACUUAUGGGCCAGAGACUACCAAAAAGUACUUU [1] tRNA-Thr-AGT-7-47 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGUCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGGACUUAUGGGCCAGAGACUACCAAAAAGUACUUU [2] tRNA-Thr-AGT-7-49 NNNNNNNNAUUUUUGUUAUCAGGCAAAUUUCUCCUACAGUUAAAUUUAGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGGACUUAUGGGCCAGAGACUACCAAAAAGUACUUU [3] tRNA-Thr-AGT-7-53 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGUCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGGACUUAUGGGCCAGAGACUACCAAAAAGUACUUU [4] tRNA-Thr-AGT-7-56 NNNNNNNNGAUUUUUGUUAUCAGACAAAUGUUUUUACAGUCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGGACUUAUGGGCCAGAGACUACCAAAAAGUACUUU [5] tRNA-Thr-AGT-7-59 UCUUCUUCGAUUUUUGUUAUCAGACAAAUGUUUUUACAGUCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGGACUUAUGGGCCAGAGACUACCAAAAAGUACUUU [6] tRNA-Thr-AGT-7-61 CUUUUUCGAUUUUUGUUAUCAGGCAAAUUUCUCCUACAGUUAAAUUUAGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGGACUUAUGGGCCAGAGACUACCAAAAAGUACUUU [7] tRNA-Thr-AGT-7-63 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGUCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGGACUUAUGGGCCAGAGACUACCAAAAAGUACUUU [8] tRNA-Thr-AGT-7-64 NNNNNNNNAUUUUUGUUAUCAGGCAAAUUUCUCCUACAGUUAAAUUUAGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGGACUUAUGGGCCAGAGACUACCAAAAAGUACUUU [9] tRNA-Thr-AGT-7-65 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGUCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGGACUUAUGGGCCAGAGACUACCAAAAAGUACUUU [10] tRNA-Thr-AGT-7-69 CUUCUUCGAUUUUUGUUAUCAGGCAAAUGUUUCUUAAAGUCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGGACUUAUGGGCCAGAGACUACCAAAAAGUACUUU [11] tRNA-Thr-AGT-7-71 NNNNNNNNGAUUUUUGUUAUCAGGCAAAUGUUUUUACAGUCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGGACUUAUGGGCCAGAGACUACCAAAAAGUACUUU [12] tRNA-Thr-AGT-10-1 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGUCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCACCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGGACUUAUGGGCCAGAGACUACCAAAAAGUACUUU [13] tRX-Thr-NNN-91-2 NNNNNNNNAUUUUUGUUAUCAGGCAAAUGUUUCUUACAGUCAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCAUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGGACUUAUGGGCCAGAGACUACCAAAAAGUACUUU [14] tRNA-Thr-TGT-5-1 CUUCUUCGAUUUUUGUUAUCAGGCAAAUGUCUCCUACAGUUAAUUUUUGUGGCGCUGUGGCUUAGUU-GGUC-AAAGUGCCUGUCUUGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGGACUUAUGGGCCAGAGACUACCAAAAAGUACUUU [15] 1009 ..............................................................................................................................UGUCUGCAGUUGGCUGGACUUAU........................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 11: 1011 Fragment Coverage tRNA-Thr-CGT-5-3: tRNA-Thr-CGT-2-1: Fragment Aminos Thr Fragment Mismatches U:+13:C:1 Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-CGT-2-1 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUCUUCAUUGUUGGCACUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUCGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUCUACAGGUGCCAGAGUUGCUUUUUGUUAAGAGUAACAAGUGUUUACG [1] tRNA-Thr-CGT-5-3 UCUUUUUUUAGUCUCUGUGUGCAAAAACGUCUUGCCUCCUAUUCAGCGUUGGUGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUCGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCAGUGCCUAAUCUACAGGUGCCAGAGUUGCUUUUUGUUAAGAGUAACAAGUGUUUACG [2] 1011 ..............................................................................................................................AAUCUACAGGUGUCAGAGUUGCUUU......................... [1,2] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 12: 1013 Fragment Coverage tRNA-Pro-CGG-28-1: tRNA-Pro-CGG-3-20: tRNA-Pro-CGG-3-23: tRNA-Pro-CGG-3-22: tRNA-Pro-CGG-25-1: tRNA-Pro-CGG-29-1: tRNA-Pro-TGG-57-1: tRNA-Pro-TGG-50-1: tRNA-Arg-CCG-6-1: tRNA-Pro-TGG-18-2: tRNA-Pro-TGG-55-1: tRNA-Pro-TGG-52-1: tRNA-Pro-TGG-51-1: tRNA-Pro-CGG-3-33: tRNA-Pro-CGG-3-30: tRX-Pro-NNN-78-1: tRNA-Pro-TGG-26-1: tRNA-Pro-TGG-26-2: tRNA-Pro-TGG-19-3: tRNA-Pro-TGG-19-2: tRNA-Pro-TGG-19-1: tRNA-Pro-TGG-15-3: tRNA-Pro-TGG-15-2: tRNA-Pro-TGG-15-1: tRNA-Pro-TGG-23-1: tRNA-Pro-TGG-2-1: tRNA-Pro-TGG-2-2: tRNA-Pro-TGG-9-1: tRNA-Pro-CGG-16-1: tRNA-Pro-TGG-24-1: tRNA-Pro-CGG-12-1: tRNA-Pro-TGG-20-1: tRNA-Pro-TGG-3-27: tRNA-Pro-CGG-19-1: tRNA-Pro-TGG-3-9: tRNA-Pro-CGG-10-1: tRNA-Pro-TGG-3-3: tRNA-Pro-CGG-39-1: tRNA-Leu-CAG-135-4: tRNA-Leu-CAG-136-2: tRNA-Pro-TGG-48-1: tRNA-Pro-TGG-23-2: tRNA-Pro-TGG-3-8: tRNA-Pro-TGG-47-2: tRNA-Pro-TGG-47-3: tRNA-Pro-TGG-47-1: tRNA-Pro-CGG-5-1: tRNA-Pro-TGG-66-1: tRNA-Pro-CGG-3-13: tRNA-Pro-CGG-8-4: tRNA-Pro-CGG-8-3: tRNA-Pro-TGG-35-1: tRNA-Pro-CGG-3-4: tRNA-Pro-CGG-3-8: tRNA-Leu-CAG-134-1: tRNA-Pro-AGG-1-105: tRNA-Pro-TGG-32-4: tRNA-Pro-TGG-32-2: tRNA-Pro-TGG-32-3: tRNA-Pro-TGG-32-1: tRNA-Pro-TGG-45-1: tRNA-Pro-TGG-64-1: tRNA-Pro-TGG-34-1: tRNA-Pro-TGG-38-1: tRNA-Pro-TGG-63-1: tRNA-Leu-CAG-135-3: tRNA-Leu-CAG-135-2: tRNA-Leu-CAG-135-1: tRNA-Leu-CAG-136-1: tRNA-Pro-TGG-1-30: tRNA-Pro-CGG-3-17: tRNA-Pro-CGG-3-10: tRNA-Pro-CGG-3-19: tRNA-Pro-TGG-30-1: Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-CCG-6-1 UUCUGACUAUCUGAUGCUUUUGAGGCCAUGUGAAACUGUUCCAAUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCCGGUGUGAGAAGUCACGGGUUCAAAUCCCGAACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [1] tRNA-Leu-CAG-134-1 GCCAGUUCGUCAGCAGAUAGUGUUGCCAUAUAAAGUUACCGGUUUGCAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCAGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAAUAAAAUGUC [2] tRNA-Leu-CAG-135-1 UUCUGACUAUCUGAUACUUCUGAGGCCAUGUGAAAUUCUCUCAAUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUCAGGUGUGAGAGGUCCUGAGUUCAAAUCCCAGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [3] tRNA-Leu-CAG-135-2 UUCUGACUAUCUGAUACUUCUGAGGCCAUGUGAAAUUCUCUCAAUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUCAGGUGUGAGAGGUCCUGAGUUCAAAUCCCAGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [4] tRNA-Leu-CAG-135-3 GCCAGUUCGUCAGCAGAUAGUGUUGCCAUAUAAAGUUACUGUUUUGCUGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUCAGGUGUGAGAGGUCCUGAGUUCAAAUCCCAGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [5] tRNA-Leu-CAG-135-4 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGUUACUGUUUUGCUGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUCAGGUGUGAGAGGUCCUGAGUUCAAAUCCCAGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCNNNNNNNNNNNNNNNNNNNNNNN [6] tRNA-Leu-CAG-136-1 UUCUGACUAUCUGAUACUUCUGAGGCCAUGUGAAAUUCUCUCAAUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUCAGGUGUGAGAGGUCCUGAGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [7] tRNA-Leu-CAG-136-2 UUCUGACUAUCUGAUACUUCUGAGGCCAUGUGAAAUUCUCUCAAUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUCAGGUGUGAGAGGUCCUGAGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCGCUAUGUCUUUCAUUAAAAUGUC [8] tRNA-Pro-AGG-1-105 UUCUGACCAUCUGUUGCUUCAGAUGUCUUGUGAAAUAUUCAAGCUUUUGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUAACAGGGCACUAUGACUUUCAUUAAAAUGUC [9] tRNA-Pro-CGG-3-4 GCCAGUUCGUCAGCAGAUAGUGUUGCCAUAUAAAGUUACUGUUUUGCUGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [10] tRNA-Pro-CGG-3-8 GCCAGUUCGUCAGCAGAUAGUGUUGCCAUAUAAAGUUACUGUUUUGCUGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [11] tRNA-Pro-CGG-3-10 GCCAGUUCGUCAGCAGAUAGUGUUGCCAUAUAAAGUUACUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCACUAAAAUGUC [12] tRNA-Pro-CGG-3-13 GCCAGUUCGUCAGCAGAUAGUGUUGCCAUAUAAAGUUACUGUUUUGCUGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [13] tRNA-Pro-CGG-3-17 GCCAGUUCGUCAGCAGAUAGUGUUGCCAUAUAAAGUUACUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUGCAGGGCACUAUGUCUUUCAUUAAAAUGUC [14] tRNA-Pro-CGG-3-19 GCCAGUUCGUCAGCAGAUAGUGUUGCCAUAUAAAGUUAUUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [15] tRNA-Pro-CGG-3-20 GCCAGUUCGUCAGCAGAUAGUGUUGCCAUAUAAAGUUAUUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [16] tRNA-Pro-CGG-3-22 GCCAGUUCGUCAGCAGAUAGUGUUGCCAUAUAAAGUUAUUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [17] tRNA-Pro-CGG-3-23 UUCUGACUAUCUGAUGCUUCUGAGGCCAUGUGAAAUUCUCUCAAUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [18] tRNA-Pro-CGG-3-30 GCCAGUUCGUCAGCAGAUAGUGUUGCCAUAUAAAGUUACUGUUUUGCUGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [19] tRNA-Pro-CGG-3-33 NNNNNNNNNNNNNNNNNNNNNNNNNNNNUAUAAAGUUACUGUUUUGCUGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [20] tRNA-Pro-CGG-5-1 UUCUGACUAUCUGAUGCUUCUGAGGCCAUGUGAAAUUUUCUCAAUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGAUGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [21] tRNA-Pro-CGG-8-3 UUCUGACUAUCUGAUGCUUCUGAGGCCAUGUGAAAUUCUCCCAAUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [22] tRNA-Pro-CGG-8-4 UUCUGACUAUCUGAUGCUUCUAAGGCCAUGUGAAAUUCCCUCAAUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [23] tRNA-Pro-CGG-10-1 UUCUGACUAUCUGAUGCUUCUAAGGCCAUGUGAAAUUCUCUCAAUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGAGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [24] tRNA-Pro-CGG-12-1 GCCAGUUCGUCAGCAGAUAGUGUUGCCUUAUAAAGUUAUUGUAUUGCAGUGGCUCGUUGGUCUAGG--GGA--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [25] tRNA-Pro-CGG-16-1 UUCUGACUAUCUGAUGCUUCUGAGGCCAUGUGAAAUUCUCUCAAUGUAGUGGCUCGUUGGUCUAGU--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCUGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [26] tRNA-Pro-CGG-19-1 GCCAGUUCGUCAGCAGAUAGUGUUGCCAUAUAAAGUUACUGUUUUGCAGUGGCUCUUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [27] tRNA-Pro-CGG-25-1 UUCUGACUAUCUGAUGCUUCUGAGGCCAUGUGAAAUUCCCUCAAUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCAGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [28] tRNA-Pro-CGG-28-1 GCCAGUUCGUCAGCAGAUAGUGUUGCCAUAUAAAGUUAUUGUUUUGCAGUGGCGCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [29] tRNA-Pro-CGG-29-1 UUCUGACUAUCUGAUGCUUCUGACAUCAUGUGAAAUGAAUUCAACUUAGUGGCUCGUUGGUCAAGG--GGU--AUGAUUCUCGCUUCGGAUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [30] tRNA-Pro-CGG-39-1 UUCUGACUAUCUGAUACUUCUGAGGCCAUGUGAAAUUCUCUCAAUUUAGUGGCUCGUUGGUCUAG---GGAU-AUGAUUCUUGCUUCGGGUGUGAGAGGUCCUGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [31] tRX-Pro-NNN-78-1 UUCUGACUAUCUGAUGCUUCUGACGCCAUGUGAACUUUUAUCACAGUAGUGGCUCGUUGCUCUAGG--GGC--AUGAUUCUCGCUUUGGGUGUGAGAGAUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [32] tRNA-Pro-TGG-1-30 UUCUGACCAUCUGCUGCUGCUGGUUCCAUGUGAAAAUGUCAAGCUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCAAUAUGGCUUUCAUAAAACCUUC [33] tRNA-Pro-TGG-2-1 UUCUGACCAUCUGCUGCUGCUGGUUCCAUGUGAAAAUGUCAAGCUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGAUGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCAAUAUGGCUUUCAUAAAACCUUC [34] tRNA-Pro-TGG-2-2 UUCUGACCAUCUGCUGCUGCUGGUUCCAUGUGAAAAUGUCAAGCUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGAUGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCAAUAUGGCUUUCAUAAAACCUUC [35] tRNA-Pro-TGG-3-3 UUCUGACUAUCUGAUGGUUCUGACGCCAUGUGAAGUUUUAUCACAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [36] tRNA-Pro-TGG-3-8 UUCUGACUAUCUGAUGCUUCUGACGCCAAGUGAAAGUUUAUCACAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [37] tRNA-Pro-TGG-3-9 GCCAAUUCGUCAGCAGAUAGUGUUGCCAUAUAAAGUUACUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUG [38] tRNA-Pro-TGG-3-27 UUCUGACUAUCUGAUGCUUCUGACGCCAUGUGAAAUUUUAUCACAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUNNNNNNNNNNNN [39] tRNA-Pro-TGG-9-1 UUCUGACUAUCUGAUGCUUCUGACGCCAUGUGAAAUUUUAUCAUAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGAUGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [40] tRNA-Pro-TGG-15-1 UUCUGACCAUCUGCUGCUGCUGGUUCCAUGUGAAGAUGUCAAGCUUUAGUGGCUCGUUUGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCAAUAUGGCUUUCAUAAAACCUUC [41] tRNA-Pro-TGG-15-2 UUCUGACCAUCUGCUGCUGCUGGUUCCAUGUGAAGAUGUCAAGCUUUAGUGGCUCGUUUGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCAAUAUGGCUUUCAUAAAACCUUC [42] tRNA-Pro-TGG-15-3 UUCUGACCAUCUGCUGCUGCUGGUUCCAUGUGAAGAUGUCAAGCUUUAGUGGCUCGUUUGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCAAUAUGGCUUUCAUAAAACCUUC [43] tRNA-Pro-TGG-18-2 UUCUGACUAUCUGAUGCUUCUGACGCCAUGUGAACUUUUAUCUUAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCUGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [44] tRNA-Pro-TGG-19-1 UUCUGACUAUCUGAUGCUUCUGACGCUAUGUGAAAUUUUAUCAGAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGAGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACCAUGACUUUCAUUAAAAUGUC [45] tRNA-Pro-TGG-19-2 UUCUGACUAUCUGAUGCUUCUGACGCCAUGUGAAAUUUUAUCACAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGAGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACCAUGACUUUCAUUAAAAUGUC [46] tRNA-Pro-TGG-19-3 UUCUGACUAUCUGAUGCUUCUGACGCCAUGUGAAAUUUUAUCACAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGAGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACCAUGACUUUCAUUAAAAUGUC [47] tRNA-Pro-TGG-20-1 UUCUGACUAUCUGAUGCUUCUGACACCAUGUGAAAUUUCAUCACUGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCUGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [48] tRNA-Pro-TGG-23-1 UUCUGACUAUCUGAUGCUUCUGACGCCAUGUGAACUUUUAUCACAGUAGUGGCUCGUUGGUCUAGG--GGC--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [49] tRNA-Pro-TGG-23-2 UUCUGACUAUCUGAUGCUUCUGACGCCAUGUGAACUUUUAUCACAGUAGUGGCUCGUUGGUCUAGG--GGC--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [50] tRNA-Pro-TGG-24-1 UUCUGACUAUCUGAUGCUUCUGACGCCAUGUGAAAUCUUAUAACAGUAGUAGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [51] tRNA-Pro-TGG-26-1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUUACUGUUUUGCAGUGGCUCGUUGAUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [52] tRNA-Pro-TGG-26-2 GCCAGUUCGUCAGCUGAUAGUGUUGCCAUAUAAAGUUACUGUUUUGCAGUGGCUCGUUGAUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [53] tRNA-Pro-TGG-30-1 GCCGGUUUGUCAGCAGAUAGUGUUGCCAUGUAAAGUUACUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAAGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUACGACUUUCAUUAAAAUGUU [54] tRNA-Pro-TGG-32-1 UUCUGACCAUCUGCUGCUGCUGGUUCCAUGUGAAAAUGUCAAGCUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCAAGAGGUCCCGGGUUCAAAUCCCGGAUGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCAAUAUGGCUUUCAUAAAACCUUC [55] tRNA-Pro-TGG-32-2 UUCUGACCAUCUGCUGCUGCUGGUUCCAUGUGAAGAUGUCAAGCUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCAAGAGGUCCCGGGUUCAAAUCCCGGAUGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCAAUAUGGCUUUCAUAAAACCUUC [56] tRNA-Pro-TGG-32-3 UUCUGACCAUCUGCUGCUGCUGGUUCCAUGUGAAAAUGUCAAGCUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCAAGAGGUCCCGGGUUCAAAUCCCGGAUGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCAAUAUGGCUUUCAUAAAACCUUC [57] tRNA-Pro-TGG-32-4 UUCUGACCAUCUGCUGCUGCUGGUUCCAUGUGAAAAUGUCAAGCUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCAAGAGGUCCCGGGUUCAAAUCCCGGAUGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCAAUAUGGCUUUCAUAAAACCUUC [58] tRNA-Pro-TGG-34-1 UUCUGACUAUCUGAUGGUUCUGACGCCAUGUGAAAGUUUAUCACAGUAGUGGCUCGUUGGUCUGGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [59] tRNA-Pro-TGG-35-1 GCCGGUUUGUCAGCAGAUAGUGUUGCCAUGUAAAGUUACUGUUUUGCAGUGGCUCGUUGGUCUAGG--UGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUU [60] tRNA-Pro-TGG-38-1 UUCUGACUAUCUGAUGGUUCUGACGCCAUGUGAAGUUUUAUCAAUGUAGUGGCUCGUUGGUCUACG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGAUGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUUAUUAAAAUGUC [61] tRNA-Pro-TGG-45-1 UUCUGACUAUCUGAUGCUUCUGACGCCAUGUGAAAUUCUAUCACAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUUGGGUGUGAGAGGUCACGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [62] tRNA-Pro-TGG-47-1 UUCUGACCAUCUGCUGCUGCUGGUUCCAUGUGAAAAUGUCAAGCUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCGCGGGUUCAAAUCCCGGAUGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCAAUAUGGCUUUCAUAAAACCUUC [63] tRNA-Pro-TGG-47-2 UUCUGACCAUCUGCUGCUGCUGGUUCCAUGUGAAAAUGUCAAGCUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCGCGGGUUCAAAUCCCGGAUGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCAAUAUGGCUUUCAUAAAACCUUC [64] tRNA-Pro-TGG-47-3 UUCUGACCAUCUGCUGCUGCUGGUUCCAUGUGAAAAUGUCAAGCUUUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCGCGGGUUCAAAUCCCGGAUGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCAAUAUGGCUUUCAUAAAACCUUC [65] tRNA-Pro-TGG-48-1 UUCUGACCAUCUGUUGCUUCAGAUGUCUUGUGAAAUAUUCAAGCUUUUGUGGCUCGUUGGUCUAGG--GGU--AUGAGUCUUGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [66] tRNA-Pro-TGG-50-1 UUCUGACUAUCUGAUGCUUCUGACGCCAUGUGAAAUUUUAUCACAGUAGUGGGUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [67] tRNA-Pro-TGG-51-1 UUCUGACUAUCUGAUUCUUCUGACGCCAUGUGAACUUUUAUCACAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUUGGGUGUGAGAGGUCCUGGGUUCAAAUCCUGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [68] tRNA-Pro-TGG-52-1 UUCUGACUAUCUGAUGCUUCUGACGCCAUGUGAAAUAUUAUCACAAUAGUGGCUCGUUGGUCUAGC--GGU--AUGAUUCUAGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAG.....CCGUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [69] tRNA-Pro-TGG-55-1 UUCUGACUAUCUGAUGGUUCUGACGCCAUGUGAAGUUUUAUCAAUGUAGUGGCUCGUUGGUCUACG--GGU--AUGAUUUUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGAUGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUUAUUAAAAUGUC [70] tRNA-Pro-TGG-57-1 NNNNGACUAUCUGAUGCUUCUGACGCCAUGUGAAAUUUUAUCACAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGUUUUGGGUGUGAGAGGUCCCGGUUUCAAAUCCCGGACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [71] tRNA-Pro-TGG-63-1 UUCUGACUAUCUGAUGCUUCUGACGCCAUGUGAAAUUUUAUUACAGUAGUGCCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCUGGGUUCAAAUCCCGGACGAGcccuuGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUCUUUCG [72] tRNA-Pro-TGG-64-1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGUUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGUACGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [73] tRNA-Pro-TGG-66-1 UUCUGACUAUCUGAUGCUUCUGAGGCCAUGUGAAAUUCUCUCAAUUUAGUGGCUCGUUGGUCUAGU--GGU--AUGAUUCUCGCUCUGGGUGUGAGAGAACCCGGGUUCAAAUCCCGGAUGAG.....CCCUUGCAGGUGUCAUGUGUUUUACAGGGCACUAUGUCUUUCAUUAAAAUGUC [74] 1013 ...................................................................................................................................UUGCAGGUGUCAUGUGUUU............................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))).....))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++==========.....==+.................................................. // Fragment Cluster 13: 1014 Fragment Coverage tRNA-Pro-TGG-37-1: Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-TGG-37-1 UUCUGACUAUCUGAUGUUUCUGACGCCAUGUGAAAUUUUAUCACAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUUGGGUGUGAGAGGUCCUGGGUUCAAAUCCCGGACGAGCCCUUGCAGGUGUCAUGUGUUCUACAGGGCACUAUGACUUUCAUUAAAAUGUC [1] 1014 ..............................................................................................................................UUGCAGGUGUCAUGUGUUC............................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 14: 1015 Fragment Coverage tRNA-Pro-TGG-49-1: Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-TGG-49-1 UUCUGACUAUCUGAUGCUUCUGACGCCAUGUGAAAUUUUUUCACAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUCUGGGUGUGAGAGGUCCUGGGUUCAAAUCCCGGACGAGCCCUUGCAGGUGUCGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUCUU [1] 1015 ..............................................................................................................................UUGCAGGUGUCGUGUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 15: 1016 Fragment Coverage tRNA-Pro-TGG-3-6: tRNA-Pro-TGG-3-5: tRNA-Pro-TGG-3-4: tRNA-Pro-TGG-3-7: Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-TGG-3-4 UUCUGACUAUCUGAUUCUUCUGACGCCAUGUGAAAUUUUAUCACAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCUUGCAGGUGCCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [1] tRNA-Pro-TGG-3-5 UUCUGACUAUCUGAUUCUUCUGACGCCAUGUGAAAUUUUAUCACAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCUUGCAGGUGCCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [2] tRNA-Pro-TGG-3-6 UUCUGACUAUCUGAUUCUUCUGACGCCAUGUGAAAUUUUAUCACAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCUUGCAGGUGCCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [3] tRNA-Pro-TGG-3-7 UUCUGACUAUCUGAUUCUUCUGACGCCAUGUGAAAUUUUAUCACAGUAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCUUGCAGGUGCCAUGUGUUUUACAGGGCACUAUGACUUUCAUUAAAAUGUC [4] 1016 ..............................................................................................................................UUGCAGGUGCCAUGUGUUU............................... [1,2,3,4] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 16: 1017 Fragment Coverage tRNA-Pro-TGG-22-1: tRNA-Pro-TGG-1-16: tRNA-Pro-TGG-1-11: Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-TGG-1-11 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCUCGCUAGCGGCUUGUGUUUUACAGAGCAUUAUAGCUUUUUACAAAAACCU [1] tRNA-Pro-TGG-1-16 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCUCGCUAGCGGCUUGUGUUUUACAGAGCAUUAUAGCUUUUUACAAAAACCU [2] tRNA-Pro-TGG-22-1 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUUUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCUCGCUAGCGGCUUGUGUUUUACAGAGCAUUAUAGCUUUUUACAAAAACCU [3] 1017 ..............................................................................................................................UCGCUAGCGGCUUGUGUUU............................... [1,2,3] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 17: 1018 Fragment Coverage tRNA-Pro-TGG-1-22: tRNA-Pro-TGG-1-20: tRNA-Pro-TGG-1-21: tRNA-Pro-TGG-1-24: tRNA-Pro-TGG-1-28: tRNA-Pro-TGG-1-29: tRNA-Pro-TGG-13-1: tRNA-Pro-TGG-59-1: tRNA-Pro-TGG-1-7: tRNA-Pro-TGG-1-6: tRNA-Pro-TGG-1-5: tRNA-Pro-TGG-1-4: tRNA-Pro-TGG-1-8: tRNA-Pro-TGG-3-13: tRNA-Pro-TGG-12-1: tRNA-Pro-TGG-16-1: tRNA-Pro-TGG-28-1: tRNA-Pro-TGG-1-17: tRNA-Pro-TGG-1-15: tRNA-Pro-TGG-1-14: tRNA-Pro-TGG-1-13: tRNA-Pro-TGG-1-10: tRNA-Pro-TGG-1-19: tRNA-Pro-TGG-1-18: tRNA-Pro-TGG-3-24: tRNA-Pro-TGG-3-25: tRNA-Pro-TGG-3-21: tRNA-Pro-TGG-3-22: tRNA-Pro-TGG-8-1: tRNA-Pro-CGG-1-6: tRNA-Pro-TGG-3-15: tRNA-Pro-TGG-3-14: tRNA-Pro-TGG-3-17: tRNA-Pro-TGG-3-16: tRNA-Pro-TGG-3-11: tRNA-Pro-TGG-3-10: tRNA-Pro-TGG-3-12: tRNA-Pro-TGG-1-35: tRNA-Pro-TGG-3-19: tRNA-Pro-TGG-3-18: tRNA-Pro-TGG-43-1: tRNA-Pro-TGG-65-2: tRNA-Pro-TGG-65-3: tRNA-Pro-TGG-65-1: tRNA-Pro-TGG-46-2: tRNA-Pro-TGG-46-1: tRNA-Pro-TGG-41-1: tRNA-Pro-TGG-36-1: tRNA-Pro-TGG-1-32: tRNA-Pro-TGG-1-33: tRNA-Pro-TGG-1-37: tRNA-Pro-TGG-1-36: tRNA-Pro-TGG-1-38: tRNA-Pro-TGG-33-1: Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-CGG-1-6 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUCGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAANNNNN [1] tRNA-Pro-TGG-1-4 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [2] tRNA-Pro-TGG-1-5 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUAUUUACAAAAACCU [3] tRNA-Pro-TGG-1-6 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUAUUUACAAAAACCU [4] tRNA-Pro-TGG-1-7 ACCGGUUUGUCAGCAGAUAGUGCUCCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [5] tRNA-Pro-TGG-1-8 GCCGGUUUGUCAGCAGAUAGUGCUGCUGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUAUUUACAAAAACCU [6] tRNA-Pro-TGG-1-10 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [7] tRNA-Pro-TGG-1-13 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUAUUUACAAAAACCU [8] tRNA-Pro-TGG-1-14 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGUUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [9] tRNA-Pro-TGG-1-15 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [10] tRNA-Pro-TGG-1-17 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGUUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [11] tRNA-Pro-TGG-1-18 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUAGCUUUUUACAAAAACCU [12] tRNA-Pro-TGG-1-19 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [13] tRNA-Pro-TGG-1-20 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [14] tRNA-Pro-TGG-1-21 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [15] tRNA-Pro-TGG-1-22 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUCUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [16] tRNA-Pro-TGG-1-24 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUAGCUUUUUACAAAAACCU [17] tRNA-Pro-TGG-1-28 ACCGGUUUGUCAGCAGAUAGUGCUCCCGUGUAAAGUGACUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [18] tRNA-Pro-TGG-1-29 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGUAGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [19] tRNA-Pro-TGG-1-32 NNNNNNNNNNNNNNNNNNAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUCACAGAGCAUUAUGGCUUUUUACAAAAACCU [20] tRNA-Pro-TGG-1-33 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUCACAGAGCAUUAUGGCUUUUUACAAAAACCU [21] tRNA-Pro-TGG-1-35 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [22] tRNA-Pro-TGG-1-36 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [23] tRNA-Pro-TGG-1-37 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGUGGCUGCUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [24] tRNA-Pro-TGG-1-38 NNNNNNNNNNNNNNNNNNAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [25] tRNA-Pro-TGG-3-10 GCCGGUUUGUCAGCAGAUAGUGGUGCCGUGUAAAGUGGCUGUUCUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GUGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [26] tRNA-Pro-TGG-3-11 GCCGGUUUGUCAGCAGAUAGUGGUGCCGUGUAAAGUGGCUGUUCUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GUGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [27] tRNA-Pro-TGG-3-12 GCCGGUUUGUCAGCAGAUAGUGGUGCCGUGUAAAGUGGCUGUUCUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GUGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [28] tRNA-Pro-TGG-3-13 GCCGGUUUGUCAGCAGAUAGUGGUGCCGUGUAAAGCGGCUGUUCUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GUGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [29] tRNA-Pro-TGG-3-14 GCCGGUUUGUCAGCAGAUAGUGGUGCCGUGUAAAGUGGCUGUUCUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GUGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [30] tRNA-Pro-TGG-3-15 GCCGGUUUGUCAGCAGAUAGUGGUGCCGUGUAAAGUGGCUGUUCUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GUGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [31] tRNA-Pro-TGG-3-16 GCCGGUUUGUCAGCAGAUAGUGGUGCCGUGUAAAGUGGCUGUUCUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GUGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [32] tRNA-Pro-TGG-3-17 GCCGGUUUGUCAGCAGAUAGUGGUGCCGUGUAAAGCGGCUGUUCUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GUGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [33] tRNA-Pro-TGG-3-18 GCCGGUUUGUCAGCAGAUAGUGGUGCCGUGUAAAGUGGCUGUUCUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GUGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [34] tRNA-Pro-TGG-3-19 GCCGGUUUGUCAGCAGAUAGUGGUGCCGUGUAAAGUGGCUGUUCUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GUGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [35] tRNA-Pro-TGG-3-21 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GUGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [36] tRNA-Pro-TGG-3-22 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GUGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUAACAAAAACAU [37] tRNA-Pro-TGG-3-24 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GUGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [38] tRNA-Pro-TGG-3-25 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GUGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUAACAAAAACAU [39] tRNA-Pro-TGG-8-1 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUUGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUAUUUACAAAAACCU [40] tRNA-Pro-TGG-12-1 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACAAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [41] tRNA-Pro-TGG-13-1 GCCGGUUUGUCAGCAGAUAGUGGUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUAAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [42] tRNA-Pro-TGG-16-1 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGUAGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGCU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [43] tRNA-Pro-TGG-28-1 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGUUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGA---gUGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [44] tRNA-Pro-TGG-33-1 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCAUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GUGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUAACAAAAACAU [45] tRNA-Pro-TGG-36-1 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUG---guuGCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACNNNNNNNN [46] tRNA-Pro-TGG-41-1 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCUGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [47] tRNA-Pro-TGG-43-1 AGCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGAUGUUUUGCAGUGGCUCGUUGGUCUAG---GGCU-A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [48] tRNA-Pro-TGG-46-1 GCCGGUUUGUCAGCAGAUAGUGGUGCCGUGUAAAGUGGCUGUUCUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUU-----aauauCCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUAGCUUUUUACAAAAACCU [49] tRNA-Pro-TGG-46-2 GCCGGUUUGUCAACAGAUAGUGGUGCCGUGUAAAGUGGCUGUUCUGCAGUGGCUCGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUU-----aauauCCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUAGCUUUUUACAAAAACCU [50] tRNA-Pro-TGG-59-1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGUGGCUGUUUUGCAGUGGCUCGUUGGUCUAG---GGCU-A.UGAUUCUCGCUUUGGGU...GUGAGAUGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUAACAAAAACAU [51] tRNA-Pro-TGG-65-1 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGGCUGUUUUGCAGUGG-UUGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [52] tRNA-Pro-TGG-65-2 GCCGGUUUGUCAGCAGAUAGUGCUGCCGUGUAAAGUGUCUGUUUUGCAGUGG-UUGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGANNNNNNNNNNNNNNNNNNNNNNNNN [53] tRNA-Pro-TGG-65-3 NNNNNNNNNNNNNNNNNNNNNNNNNNNGUGUAAAGUGGCUGUUUUGCAGUGG-UUGUUGGUCUAGG--GGU--A.UGAUUCUCGCUUUGGGU...GCGAGAGGUCCCGGGUUCAAAU.....CCCGGACGAGCCCUCGCAAGCGGCUUGCGUUUUACAGAGCAUUAUGGCUUUUUACAAAAACCU [54] 1018 .......................................................................................................................................UCGCAAGCGGCUUGCGUUU............................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________~>>>>,<<<<<_______~~~>>>>>,,,,,<<<<<_______~~~~~>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++~====+=====++***++~~~=====+++++=====+++++++~~~~~============+.................................................. // Fragment Cluster 18: 1019 Fragment Coverage tRNA-Cys-GCA-2-53: tRNA-Cys-GCA-2-52: tRNA-Cys-GCA-2-51: tRNA-Cys-GCA-2-50: tRNA-Cys-GCA-2-57: tRNA-Cys-GCA-2-56: tRNA-Cys-GCA-2-55: tRNA-Cys-GCA-2-54: tRNA-Cys-GCA-2-59: tRNA-Cys-GCA-2-58: tRNA-Cys-GCA-2-31: tRNA-Cys-GCA-2-30: tRNA-Cys-GCA-2-33: tRNA-Cys-GCA-2-32: tRNA-Cys-GCA-2-39: tRNA-Cys-GCA-2-38: tRNA-Cys-GCA-2-44: tRNA-Cys-GCA-2-46: tRNA-Cys-GCA-2-47: tRNA-Cys-GCA-2-40: tRNA-Cys-GCA-2-41: tRNA-Cys-GCA-2-42: tRNA-Cys-GCA-2-43: tRNA-Cys-GCA-2-48: tRNA-Cys-GCA-2-49: tRNA-Cys-GCA-2-35: tRNA-Cys-GCA-2-69: tRNA-Cys-GCA-2-34: tRNA-Cys-GCA-2-62: tRNA-Cys-GCA-2-37: tRNA-Cys-GCA-2-63: tRNA-Cys-GCA-2-36: tRNA-Cys-GCA-2-75: tRNA-Cys-GCA-2-71: tRNA-Cys-GCA-2-70: tRNA-Cys-GCA-2-73: tRNA-Cys-GCA-2-72: tRNA-Cys-GCA-2-22: tRNA-Cys-GCA-2-23: tRNA-Cys-GCA-2-21: tRNA-Cys-GCA-2-27: tRNA-Cys-GCA-2-24: tRNA-Cys-GCA-2-25: tRNA-Cys-GCA-2-28: tRNA-Cys-GCA-2-20: tRNA-Cys-GCA-2-26: tRNA-Cys-GCA-2-3: tRNA-Cys-GCA-2-2: tRNA-Cys-GCA-2-29: tRNA-Cys-GCA-2-74: tRNA-Cys-GCA-2-1: tRNA-Cys-GCA-2-68: tRNA-Cys-GCA-2-66: tRNA-Cys-GCA-2-64: tRNA-Cys-GCA-2-65: tRNA-Cys-GCA-2-60: tRNA-Cys-GCA-2-61: tRNA-Cys-GCA-2-17: tRNA-Cys-GCA-2-16: tRNA-Cys-GCA-2-15: tRNA-Cys-GCA-2-14: tRNA-Cys-GCA-2-13: tRNA-Cys-GCA-2-12: tRNA-Cys-GCA-2-11: tRNA-Cys-GCA-2-10: tRNA-Cys-GCA-2-19: tRNA-Cys-GCA-2-18: tRNA-Cys-GCA-2-67: tRNA-Cys-GCA-2-7: tRNA-Cys-GCA-2-6: tRNA-Cys-GCA-2-5: tRNA-Cys-GCA-2-4: tRNA-Cys-GCA-2-9: tRNA-Cys-GCA-2-8: tRNA-Cys-GCA-5-1: tRNA-Cys-GCA-2-45: tRNA-Cys-GCA-6-1: Fragment Aminos Cys Fragment Alignment # STOCKHOLM 1.0 tRNA-Cys-GCA-2-1 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [1] tRNA-Cys-GCA-2-2 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [2] tRNA-Cys-GCA-2-3 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [3] tRNA-Cys-GCA-2-4 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [4] tRNA-Cys-GCA-2-5 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [5] tRNA-Cys-GCA-2-6 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [6] tRNA-Cys-GCA-2-7 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [7] tRNA-Cys-GCA-2-8 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [8] tRNA-Cys-GCA-2-9 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [9] tRNA-Cys-GCA-2-10 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [10] tRNA-Cys-GCA-2-11 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [11] tRNA-Cys-GCA-2-12 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [12] tRNA-Cys-GCA-2-13 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [13] tRNA-Cys-GCA-2-14 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [14] tRNA-Cys-GCA-2-15 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [15] tRNA-Cys-GCA-2-16 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [16] tRNA-Cys-GCA-2-17 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [17] tRNA-Cys-GCA-2-18 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [18] tRNA-Cys-GCA-2-19 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [19] tRNA-Cys-GCA-2-20 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [20] tRNA-Cys-GCA-2-21 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [21] tRNA-Cys-GCA-2-22 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [22] tRNA-Cys-GCA-2-23 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [23] tRNA-Cys-GCA-2-24 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [24] tRNA-Cys-GCA-2-25 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [25] tRNA-Cys-GCA-2-26 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [26] tRNA-Cys-GCA-2-27 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [27] tRNA-Cys-GCA-2-28 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [28] tRNA-Cys-GCA-2-29 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [29] tRNA-Cys-GCA-2-30 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [30] tRNA-Cys-GCA-2-31 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [31] tRNA-Cys-GCA-2-32 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [32] tRNA-Cys-GCA-2-33 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [33] tRNA-Cys-GCA-2-34 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [34] tRNA-Cys-GCA-2-35 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [35] tRNA-Cys-GCA-2-36 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [36] tRNA-Cys-GCA-2-37 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [37] tRNA-Cys-GCA-2-38 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [38] tRNA-Cys-GCA-2-39 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [39] tRNA-Cys-GCA-2-40 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [40] tRNA-Cys-GCA-2-41 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [41] tRNA-Cys-GCA-2-42 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [42] tRNA-Cys-GCA-2-43 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [43] tRNA-Cys-GCA-2-44 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [44] tRNA-Cys-GCA-2-45 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [45] tRNA-Cys-GCA-2-46 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [46] tRNA-Cys-GCA-2-47 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [47] tRNA-Cys-GCA-2-48 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [48] tRNA-Cys-GCA-2-49 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [49] tRNA-Cys-GCA-2-50 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [50] tRNA-Cys-GCA-2-51 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [51] tRNA-Cys-GCA-2-52 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [52] tRNA-Cys-GCA-2-53 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [53] tRNA-Cys-GCA-2-54 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [54] tRNA-Cys-GCA-2-55 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [55] tRNA-Cys-GCA-2-56 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [56] tRNA-Cys-GCA-2-57 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [57] tRNA-Cys-GCA-2-58 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [58] tRNA-Cys-GCA-2-59 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [59] tRNA-Cys-GCA-2-60 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [60] tRNA-Cys-GCA-2-61 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [61] tRNA-Cys-GCA-2-62 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [62] tRNA-Cys-GCA-2-63 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [63] tRNA-Cys-GCA-2-64 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [64] tRNA-Cys-GCA-2-65 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [65] tRNA-Cys-GCA-2-66 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [66] tRNA-Cys-GCA-2-67 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [67] tRNA-Cys-GCA-2-68 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [68] tRNA-Cys-GCA-2-69 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [69] tRNA-Cys-GCA-2-70 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [70] tRNA-Cys-GCA-2-71 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [71] tRNA-Cys-GCA-2-72 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [72] tRNA-Cys-GCA-2-73 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [73] tRNA-Cys-GCA-2-74 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [74] tRNA-Cys-GCA-2-75 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUGCCUUGAUAACGGGUUGC [75] tRNA-Cys-GCA-5-1 GAUCUUUAUGAAAGAGUUUUCUAUCUUUGCUAAAUAUAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAUAUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUACCUUGAUAACGGGUUGC [76] tRNA-Cys-GCA-6-1 GAUCUUUAUGAAAGAGUUUUCUUUCUUUGCUAAAUUAAACUUGUUGUCAUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAUGUCCGGGUGCCCCCUUUGUCAAGACCUUGGAUUUGUGUCUGUAACUUACCUUGAUAACGGGUUGC [77] 1019 ..............................................................................................................................UUGUCAAGACCUUGGAUUU............................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 19: 1022 Fragment Coverage tRNA-Phe-GAA-2-8: tRNA-Phe-GAA-2-7: tRNA-Phe-GAA-2-6: tRNA-Phe-GAA-2-4: tRNA-Phe-GAA-2-3: tRNA-Phe-GAA-12-1: tRNA-Phe-GAA-2-12: tRNA-Phe-GAA-2-11: tRNA-Phe-GAA-20-1: tRNA-Phe-GAA-11-2: tRNA-Phe-GAA-8-1: Fragment Aminos Phe Fragment Alignment # STOCKHOLM 1.0 tRNA-Phe-GAA-2-3 UCUGCUAGGUCUCACCGACAUCCAUGCUGCAGAGCAGUUGAGACAAGACAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUCGGCAAAGCAGCGUUGACGUUCAGUUUUUGGCAUGAGGGUCAGGGAACCNNNNNN [1] tRNA-Phe-GAA-2-4 UCUGCUAGGUCUCACCGACAUCCAUGCUGCAGAGCAGUUGAGACAAGACAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUCGGCAAAGCAGCGUUGACGUUCAGUUUUUGGCAUGAGGGUCAGGGAACCNNNNNN [2] tRNA-Phe-GAA-2-6 UCUGCUAGGUCUCACCGACAUCCAUGCUGCAGAGCAGUUGAGACAAGACAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUCGGCAAAGCAGCGUUGACGUUCAGUUUUUGGCAUGAGGGUCAGGGAACCNNNNNN [3] tRNA-Phe-GAA-2-7 UCUGCUAGGUCUCACCGACAUCCAUGCUGCAGAGCAGUUGAGACAAGACAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUCGGCAAAGCAGCGUUGACGUUCAGUUUUUGGCAUGAGGGUCAGGGAACCNNNNNN [4] tRNA-Phe-GAA-2-8 CAGCGUAGGUCUCACCGACAUCCAUGCUGCAGAGCAGUUGAGACAAGACAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUCGGCAAAGCAGCGUUGACGUUCAGUUUUUGGCAUGAGGGUCAGGGAACCGAAAGU [5] tRNA-Phe-GAA-2-11 UCUGCUAGGUCUCACCGACAUCCAUGCUGCAGAGCAGUUGAGACAAGACAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUCGGCAAAGCAGCGUUGACGUUCAGUUUUUGGCAUGAGGGUCAGGGAACCNNNNNN [6] tRNA-Phe-GAA-2-12 UCUGCUAGGUCUCACCGACAUCCAUGCUGCAGAGCAGUUGAGACAAGACAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUCGGCAAAGCAGCGUUGACGUUCAGUUUUUGGCAUGAGGGUCAGGGAACCNNNNNN [7] tRNA-Phe-GAA-8-1 UCUGCUAGGUCUCACCGACAUCCAUGCUGCAGAGCAGUUGAGACAAGACAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCUGGGUUUCGGCAAAGCAGCGUUGACGUUCAGUUUUUGGCAUGAGGGUCAGGGAACCNNNNNN [8] tRNA-Phe-GAA-11-2 UCUGCUAGGUCUCACCGACAUCCAUGCUGCAGAGCAGUUGAGACAAGACAGCCGAAAUAGCUCAGUU-GGG--AGAGUGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUUGGCAAAGCAGCGUUGACGUUCAGUUUUUGGCAUGAGGGUCAGGGAACCNNNNNN [9] tRNA-Phe-GAA-12-1 UCUGCUAGGUCUCACCGACAUCCAUGCUGCAGAGCAGUUGAGACAAGACAGCCGAAAUAGCUCAGUU-GGC--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUCGGCAAAGCAGCGUUGACGUUCAGUUUUUGGCAUGAGGGUCAGGGAACCNNNNNN [10] tRNA-Phe-GAA-20-1 UCUGCUAGGUCUCACCGACAUCCAUGCUGCAGAGCAGUUGAGACAAGACAGCCGAAAUAGCUCAGUU-GGG--AGAGCGAUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUCGGCAAAGCAGCGUUGACGUUCAGUUUUUGGCAUGAGGGUCAGGGAACCNNNNNN [11] 1022 ..............................................................................................................................AAGCAGCGUUGACGUUCAGUUU............................ [1,2,3,4,5,6,7,8,9,10,11] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 20: 1023 Fragment Coverage tRNA-Phe-GAA-18-1: Fragment Aminos Phe Fragment Alignment # STOCKHOLM 1.0 tRNA-Phe-GAA-18-1 UCUGCUAGGUCUCACCGACAUCCAUGCUGCAGAGCACUUGAGACAAGACAGCCGAAAUAGCUCAGUU-GGG--ACAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUCGGCAAAGCAGCGUUGUCGUUCAGUUUUUGGCAUGAGGGUCAGGGAACCNNNNNN [1] 1023 ..............................................................................................................................AAGCAGCGUUGUCGUUCAGUUU............................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 21: 1025 Fragment Coverage tRX-Thr-NNN-15-1: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRX-Thr-NNN-15-1 CAUGCCUUAUGUUACACUAAAUAACGUUAUUUCCGCCCUGGUGGCCAUCAGGCGCGGUGGCCAAGU--GGU--AAGGCGUCGGUCUCGUAAACCGAAGAUCGCGGGUUCGAACCCCGUCCGUGCCUUGAUCUGGAAAACAAUGGUAAUUUUGCAAAUAACUGGUAUGAAACAAACA [1] 1025 ..............................................................................................................................UGAUCUGGAAAACAAUGGUAAUUU.......................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 22: 1026 Fragment Coverage tRNA-Ser-TGA-19-3: Fragment Aminos Ser Fragment Mismatches G:+18:C:1 Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-TGA-19-3 UUGGGAUGGUAUCUCACAUCUUAUACCAUGCUUUUAGGCCAUGACGGUGAGCUGCGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUGAAAUCCAAU-G-CGCAGGUUCGAACCCUGCUCGCAGCGGAAAAGAGUCGCAUUUUCCUGAUUUUGUCAGAUGUGCACAACGAAAUUUA [1] 1026 ..............................................................................................................................GAAAAGAGUCGCAUUUUG................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 23: 1027 Fragment Coverage tRNA-Leu-CAG-5-31: tRNA-Leu-CAG-5-36: tRNA-Leu-CAG-5-35: tRNA-Leu-CAG-5-38: tRNA-Leu-CAG-35-2: tRNA-Leu-CAG-35-1: tRX-Leu-NNN-58-1: tRNA-Leu-CAG-14-1: tRNA-Leu-CAG-4-3: tRNA-Leu-CAG-4-4: tRNA-Leu-CAG-4-5: tRNA-Leu-CAG-4-6: tRNA-Leu-CAG-4-7: tRNA-Leu-CAG-4-8: tRNA-Leu-CAG-4-9: tRNA-Leu-CAG-76-1: tRNA-Leu-CAG-5-60: tRNA-Leu-CAG-1-1: tRNA-Leu-CAG-5-6: tRNA-Leu-CAG-5-1: tRNA-Leu-CAG-5-2: tRNA-Leu-CAG-5-9: tRNA-Leu-CAG-5-25: tRNA-Leu-CAG-5-26: tRNA-Leu-CAG-86-2: tRNA-Leu-CAG-5-21: tRNA-Leu-CAG-5-23: tRNA-Leu-CAG-88-1: tRNA-Leu-CAG-5-29: tRNA-Leu-CAG-9-1: tRNA-Leu-CAG-120-3: tRNA-Leu-CAG-120-2: tRNA-Leu-CAG-5-51: tRNA-Leu-CAG-5-53: tRNA-Leu-CAG-5-52: tRNA-Leu-CAG-23-1: tRNA-Leu-CAG-5-24: tRNA-Leu-CAG-20-1: tRNA-Leu-CAG-87-1: tRNA-Leu-CAG-20-3: tRNA-Leu-CAG-1-2: tRNA-Leu-CAG-61-1: tRNA-Leu-CAG-5-15: tRNA-Leu-CAG-5-16: tRNA-Leu-CAG-5-11: tRNA-Leu-CAG-5-10: tRNA-Leu-CAG-5-13: tRNA-Leu-CAG-5-12: tRNA-Leu-CAG-4-10: tRNA-Leu-CAG-43-1: tRNA-Leu-CAG-55-1: tRNA-Leu-CAG-26-1: tRNA-Leu-CAG-53-1: tRNA-Leu-CAG-4-12: tRNA-Leu-CAG-5-5: tRNA-Leu-CAG-48-1: tRNA-Leu-CAG-5-42: tRNA-Leu-CAG-5-40: tRNA-Leu-CAG-5-46: tRNA-Leu-CAG-5-47: tRNA-Leu-CAG-5-44: tRNA-Leu-CAG-5-45: tRNA-Leu-CAG-5-48: tRNA-Leu-CAG-5-49: tRNA-Leu-CAG-46-1: tRNA-Leu-CAG-47-1: tRNA-Leu-CAG-47-2: tRNA-Leu-CAG-47-3: tRNA-Leu-CAG-12-1: tRNA-Leu-CAG-5-22: tRNA-Leu-TAG-1-2: tRNA-Leu-CAG-94-1: tRNA-Leu-CAG-120-1: tRNA-Leu-CAG-5-14: tRNA-Leu-CAG-120-5: tRNA-Leu-CAG-120-4: tRNA-Leu-CAG-122-1: tRNA-Leu-CAG-86-1: tRNA-Leu-CAG-92-1: tRNA-Leu-CAG-5-27: tRNA-Leu-CAG-37-1: tRNA-Leu-CAG-19-1: tRNA-Leu-TAG-69-1: Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-CAG-1-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [1] tRNA-Leu-CAG-1-2 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [2] tRNA-Leu-CAG-4-3 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [3] tRNA-Leu-CAG-4-4 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [4] tRNA-Leu-CAG-4-5 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [5] tRNA-Leu-CAG-4-6 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [6] tRNA-Leu-CAG-4-7 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [7] tRNA-Leu-CAG-4-8 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [8] tRNA-Leu-CAG-4-9 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [9] tRNA-Leu-CAG-4-10 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [10] tRNA-Leu-CAG-4-12 CACAGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [11] tRNA-Leu-CAG-5-1 CACGGUACUGCGGUGUGGCUCCGAGAAGACAGCUCCUGCCAAGUUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAGUCUUUAACUCUCUGCCC [12] tRNA-Leu-CAG-5-2 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [13] tRNA-Leu-CAG-5-5 CACGGUACUGCGGUGCGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAGUCUUUAACUCUCUGCCC [14] tRNA-Leu-CAG-5-6 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCUAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [15] tRNA-Leu-CAG-5-9 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCAGAAUUCUUUAACUCUCUGCCC [16] tRNA-Leu-CAG-5-10 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCAGAAUUCUUUAACUCUCUGCCC [17] tRNA-Leu-CAG-5-11 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCAGAAUUCUUUAACUCUCUGCCC [18] tRNA-Leu-CAG-5-12 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCAGAAUUCUUUAACUCUCUGCCC [19] tRNA-Leu-CAG-5-13 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCAGAAUUCUUUAACUCUCUGCCC [20] tRNA-Leu-CAG-5-14 GUUUGCUCUAUAGCCCCCUCAGGGUGGUGUGGCCGUUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [21] tRNA-Leu-CAG-5-15 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [22] tRNA-Leu-CAG-5-16 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [23] tRNA-Leu-CAG-5-21 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [24] tRNA-Leu-CAG-5-22 CAGGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [25] tRNA-Leu-CAG-5-23 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUGCUUUAACUCUCUGCCC [26] tRNA-Leu-CAG-5-24 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUGCUUUAACUCUCUGCCC [27] tRNA-Leu-CAG-5-25 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [28] tRNA-Leu-CAG-5-26 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [29] tRNA-Leu-CAG-5-27 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [30] tRNA-Leu-CAG-5-29 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [31] tRNA-Leu-CAG-5-31 CACGGUACUGCGGUGCGGCUCCCAGAAGACAGCUCCUGCCAAGCUUGCUUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAGUCUUUAACUCUCUGCCC [32] tRNA-Leu-CAG-5-35 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCAGAAUUCUUUAACUCUCUGCCC [33] tRNA-Leu-CAG-5-36 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCAGAAUUCUUUAACUCUCUGCCC [34] tRNA-Leu-CAG-5-38 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [35] tRNA-Leu-CAG-5-40 CACGGUACUGCGGUCUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [36] tRNA-Leu-CAG-5-42 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAGUUCUUUAACUCUCUGCCC [37] tRNA-Leu-CAG-5-44 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [38] tRNA-Leu-CAG-5-45 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [39] tRNA-Leu-CAG-5-46 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [40] tRNA-Leu-CAG-5-47 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [41] tRNA-Leu-CAG-5-48 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [42] tRNA-Leu-CAG-5-49 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [43] tRNA-Leu-CAG-5-51 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [44] tRNA-Leu-CAG-5-52 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [45] tRNA-Leu-CAG-5-53 UACGGUACUGCGGUGUGGCUCCGAGAAGACAGCUCCUGCCAAGUUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAGUCUUUAACUCUCUGCCC [46] tRNA-Leu-CAG-5-60 NNNNNNNNNNNNNNNNNNNNCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUNNNNNNNNNNNNNNNNN [47] tRNA-Leu-CAG-9-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGUGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [48] tRNA-Leu-CAG-12-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-UGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [49] tRNA-Leu-CAG-14-1 CACGGUACUGCGGUGUGACUCCCAGGAGACAGCUCCUGCCAAACUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAGUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [50] tRNA-Leu-CAG-19-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [51] tRNA-Leu-CAG-20-1 CACGGUACUGCGGUGUGGCUGCCAGGAGACAGCUCCUGCCAAGUUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGUGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAGUCUUUAACUCUCUACCC [52] tRNA-Leu-CAG-20-3 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGUUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGUGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAGUCUUUAACUCUCUACCC [53] tRNA-Leu-CAG-23-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGGCAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [54] tRNA-Leu-CAG-26-1 CCAUGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGAUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [55] tRNA-Leu-CAG-35-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUUCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [56] tRNA-Leu-CAG-35-2 CACGGUACUGCGGUGUGGCUCCCAGGAGACAUCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUUCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [57] tRNA-Leu-CAG-37-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCUACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [58] tRNA-Leu-CAG-43-1 CACGGUACUGCGGUGCGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUUGCAGU-G-UGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAGUCUUUAACUCUCUGCCC [59] tRNA-Leu-CAG-46-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGCCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [60] tRNA-Leu-CAG-47-1 CACGGUACUUCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGUUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUUGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAGUCUUUAACUCUCUGCCC [61] tRNA-Leu-CAG-47-2 CACGGUACUUCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGUUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUUGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAGUCUUUAACUCUCUGCCC [62] tRNA-Leu-CAG-47-3 CACGGUACUUCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGUUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUUGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAGUCUUUAACUCUCUGCCC [63] tRNA-Leu-CAG-48-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCUGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCAGAAUUCUUUAACUCUCUGCCC [64] tRNA-Leu-CAG-53-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGUUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUCACAAACCGAGCCUGCGGCAGUGCGCUCAGGCAGAACUCUUUAACUCUCUGCCC [65] tRNA-Leu-CAG-55-1 CACGGUACUGCGGUGCGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCUGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUUGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAGUCAUUAACUCUCUGCCC [66] tRNA-Leu-CAG-61-1 CACGGUACUGCGGCGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-UGUGGGUUAGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [67] tRNA-Leu-CAG-76-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-UGUGGGUUCGAAUCCCACUUCUGUCAAACCGAGCCUGCGGCAGUGCGCUCAGGCUCAAUUCUUUAACUCUCUGCCC [68] tRNA-Leu-CAG-86-1 CACGGUACUGCGGUGUGGCUCCCAAGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUUGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [69] tRNA-Leu-CAG-86-2 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUUGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [70] tRNA-Leu-CAG-87-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCCCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGGGUUCAGGUCGCAGU-G-UGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [71] tRNA-Leu-CAG-88-1 CACGGUACUGCGGUGUGGCUCCGAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGUGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUGUGACAAACCGAGCCUGCGGCAGUGCGCUCAGACUGAAUUUUUUAACUCUCUGCCC [72] tRNA-Leu-CAG-92-1 CACGGUUCUGCGGUGUGGCUCCGAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGGCUGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUGUGACAAACCGAGCCUGCGGCAGUGCGCUCAGACUGAAUUCUUUAACUCUCUGCCC [73] tRNA-Leu-CAG-94-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGA-GGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCAGAAUUCUUUAACUCUCUGCCC [74] tRNA-Leu-CAG-120-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAAGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUUGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCA [75] tRNA-Leu-CAG-120-2 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAAGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUUGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [76] tRNA-Leu-CAG-120-3 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAAGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUUGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [77] tRNA-Leu-CAG-120-4 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAAGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUUGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCA [78] tRNA-Leu-CAG-120-5 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCUUGCAUGUCAGGAAGGCCGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUUGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [79] tRNA-Leu-CAG-122-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAGGAUGCCUGAGC--GGUCUA.......AGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUAAAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAGUCUUUAACUCUCUGCCC [80] tRX-Leu-NNN-58-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGUUUGCAUGUCAGGAUGGCCGAG---------cacucuaAGGUGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCUACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAGUCUUUAACUCUCUGCCC [81] tRNA-Leu-TAG-1-2 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCUUGCCAAGCUUGCAUGUCAGGAUGGCCGAGC--GGUCUA.......AGGCGCUGCGUUUAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAGUUCUUUAACUCUCUGCCC [82] tRNA-Leu-TAG-69-1 CACGGUACUGCGGUGUGGCUCCCAGGAGACAGCUCCUGCCAAGCUUGCAUGUCAUGAUGGCCGAGC--GGUCUG.......AGGUGCUGCGUUUAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACAAACCGAGCCUGCGGCAGUGCGCUCAGGCUGAAUUCUUUAACUCUCUGCCC [83] 1027 .....................................................................................................................................AACCGAGCCUGCGGCAGUGCGCUC.......................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________~~~~~~~>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++~~~~~~~====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 24: 1028 Fragment Coverage tRX-Thr-NNN-134-1: tRX-Thr-NNN-5-1: tRNA-Thr-AGT-30-1: tRNA-Thr-AGT-8-1: tRNA-Thr-AGT-2-1: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-AGT-2-1 AUUUUAUUUUAAUUUUUUUAUUAAAUAAUUAUCCCCAAUCAUGGCCGUCCGGCGCUGUGGCUUAGUU-GGUU-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGUGCUUUUAUGGGCCAGAGACUACCAAAAAGUGCU [1] tRNA-Thr-AGT-8-1 NNNNNNNUUAUUUUUUUUGAUUAAAUAAUUAUCCCCUAUCACGGCCGUCCGGCGCUGUGGCUUAGUU-GGUC-AAAGCACCUGUCUAGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGUGCUUUUAUGGGCCAGAGACUACCAGAAAGUGCU [2] tRNA-Thr-AGT-30-1 NNNNNNNUAAUUUUUUUUUAUUAAACAUAUAUCCUCUAUCAUGGCCGUCUGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUAUAGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGUGCUUUUAUGGGCCAGAGACUACCAAAAAGUGCU [3] tRX-Thr-NNN-5-1 NNNNNNNUUUAUUUUUUUGAUUAAAUAAUUAUCCCCUAUCACAGACGUCCAGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGUGCUUUUAUGGGCCAGAGACUACCAGAAAGUGCU [4] tRX-Thr-NNN-134-1 NNNNNNNUUAUUUUUUUUGAUUAAAUAAUUAUCCCCUAUCAUGGCUGUCUGGCGCUGUGGCUUAGUU-GGUC-AAAGGGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGCAGUGCCUUGUCUGCAGUUGGCUGUGCUUUUAUGGGCCAGAGACCACCAAAAAGUGCU [5] 1028 ...............................................................................................................................GUCUGCAGUUGGCUGUGCUUU............................ [1,2,3,4,5] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 25: 1029 Fragment Coverage tRNA-Thr-AGT-4-1: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-AGT-4-1 NNNNNNNUUCUUUUUUUUGCUUAAAUAAUUAUCCUCUAUCAUGGCCGUCCGGCGCUGUGGCUUAGUU-GGUC-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGCAGUGCCUUGUCCGCAGUCGGCUGUGCUUUUAUGGGCCAGAGACUACCAAAAAGUGCU [1] 1029 ...............................................................................................................................GUCCGCAGUCGGCUGUGCUUU............................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 26: 1030 Fragment Coverage tRNA-His-GTG-2-116: Fragment Aminos His Fragment Alignment # STOCKHOLM 1.0 tRNA-His-GTG-2-116 ACAAUUAUAAGGUCUGAAUCUGCCUGAGACGCGCAGCUGCUCAGUAGCGCGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCCCGGUUCGAAUCCGGGUCACGGCAAAUAUACAGAGCAAAGCAUUCGUUUUCAUAUUGCUGUGGCUGAUACAUUU [1] 1030 ..............................................................................................................................AAUAUACAGAGCAAAGCAUUCGUUU......................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 27: 1031 Fragment Coverage tRX-Glu-NNN-46-1: Fragment Aminos Glu Fragment Mismatches C:+15:U:1 Fragment Alignment # STOCKHOLM 1.0 tRX-Glu-NNN-46-1 AUCAGAAUGAACUGGAGUUUGUGCCAAGAUUGGCGUUCAAAAGUGGCAGUUCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCAGGUUCGAUUCCCGGCAUAGGAAGGCUUGAGUGCUUUUGCUUUUGUCCUUUUUGGCCAGCGGUCGGNNNNNNN [1] 1031 ...............................................................................................................................GCUUGAGUGCUUUCGCUUU.............................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 28: 1032 Fragment Coverage tRNA-Arg-CCG-2-1: Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-CCG-2-1 GUUACUGUUCUAUUAUCAAAACAGCUUGUUUGAACAAUGUGGAGUGAGAUGACCCAGUGGCCUAAU--GGAU-AAGGCAUCAGCCUCCGGAGCUGGGGAUUGUGGGUUCGAGUCCCAUCUGGGUCGGUUUCUUAUCCUGUGAUUUUUUCACAAUGAUUUAAAUGAGCAAACAUUCU [1] 1032 ..............................................................................................................................GUUUCUUAUCCUGUGAUUU............................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 29: 1033 Fragment Coverage tRNA-Phe-GAA-15-1: tRNA-Phe-GAA-1-33: tRNA-Phe-GAA-1-16: tRNA-Phe-GAA-1-17: Fragment Aminos Phe Fragment Alignment # STOCKHOLM 1.0 tRNA-Phe-GAA-1-16 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGUAGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [1] tRNA-Phe-GAA-1-17 NNUGAUCGGUCUCACAGACAUCCAUGUUGCAGGAAAAAUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGUAGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [2] tRNA-Phe-GAA-1-33 UCUGAUCGGUCUCACAGACAUGCAUGCUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGUAGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [3] tRNA-Phe-GAA-15-1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACAGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGUAGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [4] 1033 ..............................................................................................................................AAGCAGUGUGGUAGUUCUGUU............................. [1,2,3,4] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 30: 1034 Fragment Coverage tRNA-Phe-GAA-1-29: tRNA-Phe-GAA-1-23: tRNA-Phe-GAA-1-22: tRNA-Phe-GAA-1-20: tRNA-Phe-GAA-1-27: tRNA-Phe-GAA-1-26: tRNA-Phe-GAA-1-25: tRNA-Phe-GAA-1-28: tRNA-Phe-GAA-1-24: tRNA-Phe-GAA-5-11: tRNA-Phe-GAA-1-34: tRNA-Phe-GAA-1-30: tRNA-Phe-GAA-1-31: tRNA-Phe-GAA-1-32: tRX-Phe-NNN-1-1: tRNA-Phe-GAA-5-12: tRNA-Phe-GAA-5-13: tRNA-Phe-GAA-5-10: tRNA-Phe-GAA-5-16: tRNA-Phe-GAA-5-14: tRNA-Phe-GAA-5-15: tRNA-Phe-GAA-5-7: tRNA-Phe-GAA-5-9: tRNA-Phe-GAA-5-1: tRNA-Phe-GAA-5-2: tRNA-Phe-GAA-5-3: tRNA-Phe-GAA-5-4: tRNA-Phe-GAA-5-5: tRNA-Phe-GAA-5-6: tRNA-Phe-GAA-5-8: tRNA-Phe-GAA-6-1: tRNA-Phe-GAA-1-18: tRNA-Phe-GAA-1-19: Fragment Aminos Phe Fragment Alignment # STOCKHOLM 1.0 tRNA-Phe-GAA-1-18 NNNNNNCGGUCUCACAGACAUCCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [1] tRNA-Phe-GAA-1-19 UCUGAUCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [2] tRNA-Phe-GAA-1-20 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [3] tRNA-Phe-GAA-1-22 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [4] tRNA-Phe-GAA-1-23 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [5] tRNA-Phe-GAA-1-24 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [6] tRNA-Phe-GAA-1-25 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [7] tRNA-Phe-GAA-1-26 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [8] tRNA-Phe-GAA-1-27 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [9] tRNA-Phe-GAA-1-28 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [10] tRNA-Phe-GAA-1-29 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [11] tRNA-Phe-GAA-1-30 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [12] tRNA-Phe-GAA-1-31 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [13] tRNA-Phe-GAA-1-32 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [14] tRNA-Phe-GAA-1-34 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [15] tRNA-Phe-GAA-5-1 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [16] tRNA-Phe-GAA-5-2 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [17] tRNA-Phe-GAA-5-3 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [18] tRNA-Phe-GAA-5-4 UCUGAUCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [19] tRNA-Phe-GAA-5-5 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [20] tRNA-Phe-GAA-5-6 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [21] tRNA-Phe-GAA-5-7 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [22] tRNA-Phe-GAA-5-8 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [23] tRNA-Phe-GAA-5-9 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [24] tRNA-Phe-GAA-5-10 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [25] tRNA-Phe-GAA-5-11 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [26] tRNA-Phe-GAA-5-12 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [27] tRNA-Phe-GAA-5-13 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [28] tRNA-Phe-GAA-5-14 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [29] tRNA-Phe-GAA-5-15 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [30] tRNA-Phe-GAA-5-16 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [31] tRNA-Phe-GAA-6-1 NNNNNNCGGUCUCACAGACAUGCAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCUGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [32] tRX-Phe-NNN-1-1 NNNNNNCGGUCUCACAGACAUGGAUGUUGCAGGAAAGCUGAGUCAACGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUGUAAAGGUCCCUGGUUCGAUCCUGGGUUUCGGCAAAGCAGUGUGGGUGUUCUGUUUUUGGCAUGAGGGUCAGGUGACCGAAACU [33] 1034 ..............................................................................................................................AAGCAGUGUGGGUGUUCUGUUU............................ [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 31: 1035 Fragment Coverage tRNA-Trp-CCA-8-3: tRX-Trp-NNN-6-1: tRNA-Trp-CCA-16-1: tRNA-Trp-CCA-11-1: tRNA-Trp-CCA-15-1: tRNA-Trp-CCA-7-1: tRNA-Trp-CCA-8-1: tRNA-Trp-CCA-8-2: tRNA-Trp-CCA-8-4: tRNA-Trp-CCA-3-2: tRNA-Trp-CCA-3-5: tRNA-Trp-CCA-12-1: tRNA-Trp-CCA-9-1: tRNA-Trp-CCA-17-1: tRNA-Trp-CCA-18-1: tRX-Trp-NNN-5-1: tRNA-Trp-CCA-9-2: Fragment Aminos Trp Fragment Alignment # STOCKHOLM 1.0 tRNA-Trp-CCA-3-2 GUGCUCAGUUUAUGCUUGUGUCUAGCUUAUUGUUGGGCACAUUCACACAGGACCUUGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUGAAGUAGUGGAAGGCACCAUCUAG [1] tRNA-Trp-CCA-3-5 UUGCUCAGUUUAUGCUUGUGUCUAGCUUAUUGUUGGGCAUAUUCACACAGGACCUUGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUGAAGUAGUGGAAGGCACCAUCUAG [2] tRNA-Trp-CCA-7-1 GUGCUCAGUUUAUGCUUGUGUCUAGCUUAUUGUUGGGCACAUUCACACAGGACCUUGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGUGUGUUCAAAUCACGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUGAAGUAGUGGAAGGCACCAUCUAG [3] tRNA-Trp-CCA-8-1 GUGCUCAGUUUAUGCUUGUGUCUAGCUUAUUGUUGGGCACAUUCACACAGGACCUUGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGAUGCGUGUUCAAAUCACGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUGAAGUAGUGGAAGGCACCAUCUAG [4] tRNA-Trp-CCA-8-2 GUGCUCAGUUUAUGCUUGUGUCUAGCUUAUUGUUGGGCACAUUCACACAGGACCUUGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGAUGCGUGUUCAAAUCACGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUGAAGUAGUGGAAGGCACCAUCUAG [5] tRNA-Trp-CCA-8-3 GUGCUCAGUUUAUGCUUGUGUCUAGCUUAUUGUUGGGCACAUUCACACAGGACCUUGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGAUGCGUGUUCAAAUCACGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUGAAGUAGUGGAAGGCACCAUCUAG [6] tRNA-Trp-CCA-8-4 GUGCUCAGUUUAUGCUUGUGUCUAGCUUAUUGUUGGGCACAUUCACACAGGACCUUGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGAUGCGUGUUCAAAUCACGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUAAAGUAGUGGAAGGCACCAUCUAG [7] tRNA-Trp-CCA-9-1 GUGCUCAGUUUAUGCUUGUGUCUAGCUUAUUGUUGGGCACAUUCACACAGGACCUUGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCAUGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUGAAGUAGUGGAAGGCACCAUCUAG [8] tRNA-Trp-CCA-9-2 GUGCUCAGUUUAUGCUUGUGUCUAGCUUAUUGUUGGGCACAUUCACACAGGACCUUGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCAUGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUGAAGUAGUGGAAGGCACCAUCUAG [9] tRNA-Trp-CCA-11-1 GUGCUCAGUUUAUGCUUGUGUCUAGCUUGUUGUUGGGGACAUUCACACAGGACCUUGUGGCGCAAC--GGU--AGGGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUGAAGUAGUGGAAGGCACCAUCUAG [10] tRNA-Trp-CCA-12-1 GUGCUCAGUUUAUGCUUGUGUCUAGCUUAUUGUUGGGCACAUUCACACAGAACCUUGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUGAAGUAGUGGAAGGCACCAUCUAG [11] tRNA-Trp-CCA-15-1 GUGCUCAGUUUAUGCUUGUGUCUAGCUUAUUGUUGGGCACAUUCACACAGGACCUUGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCAUGUCUGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUGAAGUAGUGGAAGGCACCAUCUAG [12] tRNA-Trp-CCA-16-1 GUGCUCAGUUUAUGCUUGUGUCUAGCUUGUUGUUGGGCACAUUCAUACAGGACCUUGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUAAGAAGGUUGCGUGUUCAAAUCACGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUAAAGUAGUGGAAGGCACCAUCUAG [13] tRNA-Trp-CCA-17-1 GUGCUCAGUUUAUGCUUGUGUCUAGCUUAUUGUUGGGCACAUUCACACAGGACCUUCUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUGAAGUAGUGGAAGGCACCAUCUAG [14] tRNA-Trp-CCA-18-1 GUGCUCAGUUUAUGCUUGUGUCUAGCUUAUUGUUGGGCACAUUCACACAGGACCUUGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGAUGCGUGUUCAAAUCCCGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUAAAGUAGUGGAAGGCACCAUCUAG [15] tRX-Trp-NNN-5-1 UUGCUCAGUUUAUGCUUGUGUCUAGCUUAUUGUUGGGCAUAUUCACACAGGACCUUGUGGUGCAAC--GGU--AGCGCGUCAGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUGAAGUAGUGGAAGGCACCAUCUAG [16] tRX-Trp-NNN-6-1 GUGCUCAGUUUAUGCUUGUGUCUAGCUUAUUGUUGGGCACAUUCACACAGGACCUUGUGGCGCAAC--GGU--UGCGCGUCUGACUCCAGAUCAGAAGAUUGCGUGUUCAAAUCAUGUCAGGGUCACAGGUGCUAAGCUUGGCCUGAUUUAUGAAGUAGUGGAAGGCACCAUCUAG [17] 1035 ...............................................................................................................................AGGUGCUAAGCUUGGCCUGAUUU.......................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 32: 1036 Fragment Coverage tRNA-Val-TAC-22-3: tRNA-Val-TAC-22-2: tRNA-Val-TAC-22-7: tRNA-Val-TAC-22-6: tRNA-Val-TAC-22-4: tRNA-Val-TAC-22-9: tRX-Val-NNN-37-4: tRNA-Val-TAC-22-22: tRNA-Val-TAC-22-23: tRNA-Val-TAC-22-20: tRNA-Val-TAC-22-21: tRNA-Val-TAC-22-26: tRNA-Val-TAC-22-27: tRNA-Val-TAC-22-24: tRNA-Val-TAC-22-28: tRNA-Val-TAC-22-29: tRX-Val-NNN-31-1: tRNA-Val-AAC-68-2: tRNA-Val-TAC-22-1: tRX-Val-NNN-50-2: tRNA-Val-TAC-22-30: tRNA-Val-TAC-22-31: tRNA-Val-TAC-22-33: tRNA-Val-TAC-22-32: tRNA-Val-TAC-22-35: tRNA-Val-TAC-22-34: tRNA-Val-TAC-22-36: tRNA-Val-TAC-22-8: tRNA-Val-TAC-28-2: tRNA-Val-TAC-27-3: tRX-Val-NNN-50-1: tRX-Val-NNN-26-1: tRNA-Val-AAC-68-1: tRNA-Val-AAC-68-4: tRX-Val-NNN-44-1: tRNA-Val-TAC-22-12: tRNA-Val-TAC-22-16: tRNA-Val-TAC-22-15: tRNA-Val-TAC-24-3: tRNA-Val-TAC-29-3: tRNA-Val-TAC-29-4: tRNA-Val-TAC-29-7: tRNA-Val-TAC-28-1: tRNA-Val-TAC-29-10: tRNA-Val-TAC-29-11: tRNA-Val-TAC-27-1: tRNA-Val-TAC-27-2: tRNA-Val-TAC-22-13: tRNA-Val-TAC-22-11: tRNA-Val-TAC-22-17: tRNA-Val-TAC-22-14: tRNA-Val-TAC-29-1: tRNA-Val-TAC-29-2: tRNA-Val-TAC-24-2: tRNA-Val-TAC-24-5: tRNA-Val-TAC-29-5: tRNA-Val-TAC-24-6: tRNA-Val-TAC-29-8: tRNA-Val-TAC-29-9: Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-AAC-68-1 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAAUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUAACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [1] tRNA-Val-AAC-68-2 ACAGCACUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAAUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUAACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [2] tRNA-Val-AAC-68-4 ACAGCACUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAAUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUAACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [3] tRX-Val-NNN-26-1 ACAGCUCUAUAAAAAAGGCUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUGGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGNNNNNNNNNNNNNNNNNNN [4] tRX-Val-NNN-31-1 ACAGCUCUAUAAAAAAGGCUAUAAAAACUUGAAACAGUAUAGUCGUGUUGGUUUCCGUAGUGUAGU--GUUU-AUCACGUUUGCCUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [5] tRX-Val-NNN-37-4 ACAGCUCUAUAAAAAAGGCUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCACAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [6] tRX-Val-NNN-44-1 ACAGCACUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAAUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUUACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGCCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [7] tRX-Val-NNN-50-1 ACAGCUCUAUAAAAAAGGCUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCCUUACACGCAAAAGGUCCCAUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [8] tRX-Val-NNN-50-2 ACAGCUCUAUAAAAAAGGCUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCCUUACACGCAAAAGGUCCCAUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [9] tRNA-Val-TAC-22-1 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [10] tRNA-Val-TAC-22-2 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [11] tRNA-Val-TAC-22-3 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [12] tRNA-Val-TAC-22-4 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [13] tRNA-Val-TAC-22-6 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [14] tRNA-Val-TAC-22-7 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [15] tRNA-Val-TAC-22-8 ACAGCUCUAUAAAAAAGGCUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCACUUACAAUAGAGGAGGUAU [16] tRNA-Val-TAC-22-9 ACAGCUCUAUAAAAAAGACUAUAAAAACUUUAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [17] tRNA-Val-TAC-22-11 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCAUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [18] tRNA-Val-TAC-22-12 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [19] tRNA-Val-TAC-22-13 ACAGCUCUAUAAAAAAGGCUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [20] tRNA-Val-TAC-22-14 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [21] tRNA-Val-TAC-22-15 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [22] tRNA-Val-TAC-22-16 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUAGAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [23] tRNA-Val-TAC-22-17 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [24] tRNA-Val-TAC-22-20 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [25] tRNA-Val-TAC-22-21 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [26] tRNA-Val-TAC-22-22 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [27] tRNA-Val-TAC-22-23 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [28] tRNA-Val-TAC-22-24 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [29] tRNA-Val-TAC-22-26 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [30] tRNA-Val-TAC-22-27 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [31] tRNA-Val-TAC-22-28 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [32] tRNA-Val-TAC-22-29 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [33] tRNA-Val-TAC-22-30 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [34] tRNA-Val-TAC-22-31 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [35] tRNA-Val-TAC-22-32 ACAGCUCUAUAAAAAAGGCUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [36] tRNA-Val-TAC-22-33 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [37] tRNA-Val-TAC-22-34 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [38] tRNA-Val-TAC-22-35 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUAGAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [39] tRNA-Val-TAC-22-36 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAANNNNNNNNNNNNNNNNNNNNNNN [40] tRNA-Val-TAC-24-2 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACAUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [41] tRNA-Val-TAC-24-3 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACAUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [42] tRNA-Val-TAC-24-5 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACAUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [43] tRNA-Val-TAC-24-6 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACAUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [44] tRNA-Val-TAC-27-1 ACAGCUCUAUAAAAAAGGCUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCCUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [45] tRNA-Val-TAC-27-2 ACAGCUCUAUAAAAAAGGCUAUAAAAACUGGAAACAGUAAAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCCUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [46] tRNA-Val-TAC-27-3 ACAGCUCUAUAAAAAAGGCUAUAAAAACUGGAAACAGUAAAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCCUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [47] tRNA-Val-TAC-28-1 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACAUGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [48] tRNA-Val-TAC-28-2 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACAUGCAAAAGGUCCCCUGUUCGAAACUGGGCGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [49] tRNA-Val-TAC-29-1 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [50] tRNA-Val-TAC-29-2 ACAGCUCUAUAAAAAAGGCUAUAAAAACUUAAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [51] tRNA-Val-TAC-29-3 ACAGCUCUAUAAAAAAGGCUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [52] tRNA-Val-TAC-29-4 ACAGCUCUAUAAAAAAGGCUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [53] tRNA-Val-TAC-29-5 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [54] tRNA-Val-TAC-29-7 ACAGCACUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAAUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [55] tRNA-Val-TAC-29-8 ACAGCUCUAUAAAAAAGGCUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [56] tRNA-Val-TAC-29-9 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [57] tRNA-Val-TAC-29-10 ACAGCUCUAUAAAAAAGGCUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [58] tRNA-Val-TAC-29-11 ACAGCUCUAUAAAAAAGACUAUAAAAACUUGAAACAGUACAGUCGUGUUGGUUUCCGUAGUGUAGU--GGUU-AUCACGUUUGCUUUACACGCAAAAGGUCCCCUGUUCGAAACUGGGUGGAAACAUACGUUAGGCAGACACUUUUGUCCAAAGGCGCUUACAAUAGAGGAGGUAU [59] 1036 ..............................................................................................................................UACGUUAGGCAGACACUUU............................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. //