tDRnamer 1.0.0 (Dec 2021)
User: pchan
Run time: Sat Jan 29 20:23:40 2022
Command: tDRnamer --mode seq --seq ../../fasta/zebrafish_trf.fa --db /soe/pchan/software/tDRnamer/tDRnamer_web/tdbs/danRer11/danRer11 --source euk --output trfdb_danRer11 --minread 10 --minlen 15 --maxlen 60 --cores 4

Status: Checking input options
Status: Checking sequences in ../../fasta/zebrafish_trf.fa
Total number of sequences: 104
Missing sequence name: 0
Sequence name with special characters: 0
Below minimum sequence length (15 bp): 0
Above maximum sequence length (60 bp): 0
Invalid sequence: 0
Total number of sequences after filtering: 104

Status: Reformat sequences in trfdb_danRer11-filtered-seq.fa
Status: Search sequences against reference database
Status: Align sequences with bowtie2
104 reads; of these:
  104 (100.00%) were unpaired; of these:
    3 (2.88%) aligned 0 times
    11 (10.58%) aligned exactly 1 time
    90 (86.54%) aligned >1 times
97.12% overall alignment rate

Status: Filtering and identifying tDRs
Status: 101 sequences are identified as tDRs.
Status: Grouping tDRs
Status: Grouping tDRs
Status: Naming tDRs and summarizing results
Status: Process completed.