Fragment Cluster 1: 3042,5004 Fragment Coverage tRNA-Tyr-GTA-2:A_DSL tRNA-Tyr-GTA-1:A_DSL_TLE_Z Fragment Aminos Tyr Fragment Alignment # STOCKHOLM 1.0 tRNA-Tyr-GTA-1 -CCUUCGAUAGCUCAGUU-GGU--AGAGCGGUGGACUGUAGAUCCAUAGGUCGCUGGUUCAAAUCCGGCUCGAAGGACCA [1] tRNA-Tyr-GTA-2 -CCUUCGAUAGCUCAGUU-GGU--AGAGCGGUGGACUGUAGAUCCAUAGGUCGCUGGUUCAAGUCCGGCUCGAAGGACCA [2] 5004 .CCUUCGAUAGCUCAGUU-G............................................................ [1,2] 3042 ..............................................................AUCCGGCUCGAAGGACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 2: 5020,3044 Fragment Coverage tRNA-Ala-TGC-2:A_DSLE_TLE_Z tRNA-Ala-TGC-1:A_DSLE_TLE_Z Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-TGC-1 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCUCGCUUUGCAUGUGAGAGGCCCCGGGUUCGAUCCCCGGCAUCUCCACCA [1] tRNA-Ala-TGC-2 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCUCGCUUUGCAUGUGAGAGGCCCCGGGUUCAAUCCCCGGCAUCUCCACCA [2] 5020 .GGGGAUGUAGCUCAGU--GGU--AGAGC................................................... [1,2] 3044 ..............................................................UCCCCGGCAUCUCCACCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 3: 5009,3046 Fragment Coverage tRNA-Cys-GCA-1:A_DSLE_CS_TLE_Z Fragment Aminos Cys Fragment Alignment # STOCKHOLM 1.0 tRNA-Cys-GCA-1 -GGGGAUAUAGCUCAGU--GGU--AGAGCAUUCGACUGCAGAUCGAGAGGUCCCCGGUUCAAACCCGGGUGUCCCCUCCA [1] 5009 .GGGGAUAUAGCUCAGU--GGU--AGAGCAUUC............................................... [1] 3046 ..............................................................ACCCGGGUGUCCCCUCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 4: 5008,3014 Fragment Coverage tRNA-Pro-CGG-2:A_DSLE_CS_TLE_Z tRNA-Pro-CGG-3:TLE_Z Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-CGG-2 -GGCUCGUUGGUCUAGA--GGU--AUGAUUCUCGCUUCGGGUGCGAGAGGUCCCGGGUUCAAUUCCCGGACGAGCCCCCA [1] tRNA-Pro-CGG-3 -GGCUCGUUGGUCUAGG--GGU--AUGAUUUUCGCUUCGGGUGCGAGAGGUCCCGGGUUCAAUUCCCGGACGAGCCCCCA [2] 5008 .GGCUCGUUGGUCUAGA--GGU--AUGAUUCU................................................ [1] 3014 ..............................................................UUCCCGGACGAGCCCCCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 5: 5021,3018,3003,3028,3012,5019 Fragment Coverage tRNA-Ser-AGA-3:A_DSLE_TLE_Z tRNA-Ser-AGA-2:A_DSLE_TLE_Z tRNA-Ser-AGA-1:A_DSLE_TLE_Z tRNA-Ser-CGA-1:A_DSLE_TLE_Z Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-AGA-1 -GCAGUCGUGGCCGAGU--GGUU-AAGGCGUCUGACUAGAAAUCAGAU-G-CGUAGGUUCGAAUCCUACCGGCUGCGCCA [1] tRNA-Ser-AGA-2 -GCAGUCGUGGCCGAGC--GGUU-AAGGCGUCUGACUAGAAAUCAGAU-G-CGUAGGUUCGAAUCCUACCGACUGCGCCA [2] tRNA-Ser-AGA-3 -GCAGUCGUGGCCGAGC--GGUU-AAGGCGUCUGACUAGAAAUCAGAU-G-CGUAGGUUCGAAUCCUACCGGCUGCGCCA [3] tRNA-Ser-CGA-1 -GCAGUCGUGGCCGAGU--GGUU-AAGGCGUCUGACUCGAAAUCAGAU-G-CGUAGGUUCGAAUCCUACCGGCUGCGCCA [4] 5021 .GCAGUCGUGGCCGAGU--GGUU-AAGGC................................................... [1,4] 5019 .GCAGUCGUGGCCGAGC--GGUU-AAGGC................................................... [2,3] 3028 ..........................................................UCGAAUCCUACCGGCUGCGCCA [1,3,4] 3012 ..........................................................UCGAAUCCUACCGACUGCGCCA [2] 3018 .............................................................AAUCCUACCGACUGCGCCA [2] 3003 .............................................................AAUCCUACCGGCUGCGCCA [1,3,4] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 6: 3035,3022,3039 Fragment Coverage tRNA-Val-AAC-1:TLE_Z tRNA-Val-AAC-2:TLE_Z Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-AAC-1 -GUUUCCGUGGUGUAGU--GGUU-AUCACAUCCGCCUAACACGCGGAAGGCCCCCGGUUCAAUCCCGGGCGGAAACACCA [1] tRNA-Val-AAC-2 -GUUUCCGUGGUGUAGC--GGUU-AUCACAUCUGCCUAACACGCAGAAGGCCCCCGGUUCGAUCCCGGGCGGAAACACCA [2] 3039 ..........................................................UCGAUCCCGGGCGGAAACACCA [2] 3022 .............................................................AUCCCGGGCGGAAACACCA [1,2] 3035 ..............................................................UCCCGGGCGGAAACACCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 7: 3010,3016 Fragment Coverage tRNA-Leu-AAG-1:TLE_Z Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-AAG-1 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGUUUAAGGCACCAGU-G-CGUGGGUUCGAAUCCCACCGCUGCCACCA [1] 3010 ..........................................................UCGAAUCCCACCGCUGCCACCA [1] 3016 .............................................................AAUCCCACCGCUGCCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 8: 3027,3017 Fragment Coverage tRNA-Leu-CAG-1:TLE_Z tRNA-Leu-CAA-2:TLE_Z tRNA-Leu-CAA-1:TLE_Z Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-CAA-1 -GUCAGGAUGGCCGAGC--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G-CGUGGGUUCGAAUCCCACUUCUGACACCA [1] tRNA-Leu-CAA-2 -GUCAGGAUGGCCGAGC--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G-CGUGGGUUCGAAUCCCACUUCUGACACCA [2] tRNA-Leu-CAG-1 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACACCA [3] 3027 ..........................................................UCGAAUCCCACUUCUGACACCA [1,2,3] 3017 .............................................................AAUCCCACUUCUGACACCA [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 9: 3036,3023,5017 Fragment Coverage tRNA-Phe-GAA-1:A_DSL_TLE_Z Fragment Aminos Phe Fragment Alignment # STOCKHOLM 1.0 tRNA-Phe-GAA-1 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCCGGUUCAAUCCCGGGUUUCGGCACCA [1] 5017 .GCCGAAAUAGCUCAGUU-GGG.......................................................... [1] 3023 .............................................................AUCCCGGGUUUCGGCACCA [1] 3036 ..............................................................UCCCGGGUUUCGGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 10: 3030,5006 Fragment Coverage tRNA-Lys-CTT-1:A_DSLE_CS_TLE_Z Fragment Aminos Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Lys-CTT-1 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGCCA [1] 5006 .GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGA............................................... [1] 3030 ..........................................................UCGAGCCCCACGUUGGGCGCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 11: 5014,3008 Fragment Coverage tRNA-Asp-GTC-1:A_DSLE_CS_TLE_Z tRNA-Asp-GTC-2:A_DSLE_CS_TLE_Z tRNA-Asp-GTC-3:A_DSLE_CS Fragment Aminos Asp Fragment Alignment # STOCKHOLM 1.0 tRNA-Asp-GTC-1 -UCCUCGAUAGUAUAGU--GGUU-AGUAUCCCCGCCUGUCACGCGGGAGA-CCGGGGUUCAAUUCCCCGUCGGGGAGCCA [1] tRNA-Asp-GTC-2 -UCCUCGAUAGUAUAGU--GGUU-AGUAUCCCCGCCUGUCACGCGGGAGA-CCGGUGUUCAAUUCCCCGUCGGGGAGCCA [2] tRNA-Asp-GTC-3 -UCCUCGAUAGUAUAGU--GGUU-AGUAUCCCCGCCUGUCACGCGGGAGA-CCGGGGUUCAAUUCCCCGUCUGGGAGCCA [3] 5014 .UCCUCGAUAGUAUAGU--GGUU-AGUAUCCC................................................ [1,2,3] 3008 ........................................................GUUCAAUUCCCCGUCGGGGAGCCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 12: 3031,3021 Fragment Coverage tRNA-Ile-AAT-1:TLE_Z Fragment Aminos Ile Fragment Alignment # STOCKHOLM 1.0 tRNA-Ile-AAT-1 -GGCCCAUUAGCUCAGUU-GGUU-AGAGCGUCGUGCUAAUAACGCGAAGGUCGCGGGUUCGAUCCCCUCAUGGGCCACCA [1] 3031 ..........................................................UCGAUCCCCUCAUGGGCCACCA [1] 3021 .............................................................AUCCCCUCAUGGGCCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 13: 3004,5015,5005 Fragment Coverage tRNA-Lys-TTT-2:A_DSLE_CS_TLE_Z Fragment Aminos Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Lys-TTT-2 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUUGGACUUUUAAUCCAAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA [1] 5005 .GCCCGGAUAGCUCAGUC-GGU--AGAGC................................................... [1] 5015 .GCCCGGAUAGCUCAGUC-GGU--AGAGCAUUG............................................... [1] 3004 .............................................................AGUCCCUGUUCGGGCGCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 14: 5018,3024,3002 Fragment Coverage tRNA-Pro-TGG-1:A_DSLE_CS_TLE_Z Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-TGG-1 -GGCUCAAUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGUUGAGCCCCCA [1] 5018 .GGCUCAAUGGUCUAGG--GGU--AUGAUUCU................................................ [1] 3002 .............................................................AAUCCCGGUUGAGCCCCCA [1] 3024 ..............................................................AUCCCGGUUGAGCCCCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 15: 3011,3001 Fragment Coverage tRNA-Ser-GCT-1:TLE_Z tRNA-Ser-GCT-2:TLE_Z Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-GCT-1 -GACGAGGUGGCCGAGU--GGUU-AAGGCGUUGGACUGCUAAUCCAAU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [1] tRNA-Ser-GCT-2 -GACGAGGUGGCCGAGA--GGUU-AAGGCGUUGGACUGCUAAUCCAAU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [2] 3011 ..........................................................UCGAAUCCCAUCCUCGUCGCCA [1,2] 3001 .............................................................AAUCCCAUCCUCGUCGCCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 16: 3006,5022 Fragment Coverage tRNA-Pro-CGG-1:TSLE_Z tRNA-Pro-AGG-1:A_DSLE_CS_TSLE_Z Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-AGG-1 -GGCUCGUUGGUCUAGG--GGU--AUGAUUUCCGCUUAGGGUGCGGGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [1] tRNA-Pro-CGG-1 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [2] 5022 .GGCUCGUUGGUCUAGG--GGU--AUGAUUUC................................................ [1] 3006 .......................................................GGUUCAAAUCCCGGACGAGCCC... [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 17: 5010,3033 Fragment Coverage tRNA-Val-CAC-2:A_DSLE_CS_TLE_Z Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-CAC-2 -GUUUCCGUAGUGUAGC--GGUU-AUCACGUGUGCUUCACACGCACAAGGUCCCCGGUUCGAACCCGGGCGGGAACACCA [1] 5010 .GUUUCCGUAGUGUAGC--GGUU-AUCACGUGU............................................... [1] 3033 ..............................................................ACCCGGGCGGGAACACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 18: 5011,3019 Fragment Coverage tRNA-Val-CAC-1:A_DSLE_CS_TLE_Z Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-CAC-1 -GUUUUCGUAGUGUAGU--GGUU-AUCACGUGUGCUUCACACGCACAAGGUCCCCGGUUCGAACCCGGGCGAAAACACCA [1] 5011 .GUUUUCGUAGUGUAGU--GGUU-AUCACGUGU............................................... [1] 3019 ..............................................................ACCCGGGCGAAAACACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 19: 3034,5003,5023,5013 Fragment Coverage tRNA-Glu-CTC-2:A_DSLE_CS_TLE_Z tRNA-Glu-CTC-3:A_DSLE_CS_TLE_Z tRNA-Glu-CTC-1:A_DSLE_CS Fragment Aminos Glu Fragment Alignment # STOCKHOLM 1.0 tRNA-Glu-CTC-1 -UCCCAUAUUGUCUAGU--GGUU-AGGAUAUCCGGCUCUCACCCGGAAGG-CCCGGGUUCGAUUCCCGGUAUGGGAACCA [1] tRNA-Glu-CTC-2 -UCCCAUAUUGUCUAGU--GGUU-AGGAUACCCGGCUCUCACCCGGGAGG-CCCGGGUUCAAUUCCCGGUAUGGGAACCA [2] tRNA-Glu-CTC-3 -UCCCAUAUUGUCUAGU--GGUU-AGGAUAUCCGGCUCUCACCCGGAAGG-CCCGGGUUCAAUUCCCGGUAUGGGAACCA [3] 5013 .UCCCAUAUUGUCUAGU--GGUU-AGGAUA.................................................. [1,2,3] 5023 .UCCCAUAUUGUCUAGU--GGUU-AGGAUACC................................................ [2] 5003 .UCCCAUAUUGUCUAGU--GGUU-AGGAUAUCC............................................... [1,3] 3034 ........................................................GUUCAAUUCCCGGUAUGGGAACCA [2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 20: 5002,5012 Fragment Coverage tRNA-Glu-TTC-1:A_DSLE_CS Fragment Aminos Glu Fragment Alignment # STOCKHOLM 1.0 tRNA-Glu-TTC-1 -UCCCAUAUGGUCUAGU--GGCU-AGGAUAUCUGGCUUUCACCCAGAAGG-CCCGGGUUCGAUUCCCGGUAUGGGAACCA [1] 5012 .UCCCAUAUGGUCUAGU--GGC.......................................................... [1] 5002 .UCCCAUAUGGUCUAGU--GGCU-AGGAUAUCU............................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 21: 3043,5007 Fragment Coverage tRNA-Gly-TCC-1:A_DSLE_CS_TLE_Z tRNA-Gly-TCC-2:TLE_Z Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-TCC-1 -GCGUCGGUGGUGUAAU--GGUU-AGCAUAGUUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCGGCCGACGCACCA [1] tRNA-Gly-TCC-2 -GCGUCGGUGGUGUAAU--GGUC-AGCAUAGUUGCCUUCCAAGCAGUUGA-UCCGGGUUCGAUUCCCGGCCGACGCACCA [2] 5007 .GCGUCGGUGGUGUAAU--GGUU-AGCAUAGUU............................................... [1] 3043 .............................................................AUUCCCGGCCGACGCACCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 22: 5016 Fragment Coverage tRNA-Lys-TTT-1:A_DSLE_CS Fragment Aminos Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Lys-TTT-1 -GCCCGGGUAGCUCAGUC-GGU--AGAGCAUUGGACUUUUAAUCCAAGGGUCCAGGGUUCAAGUCCCUGCUCGGGCGCCA [1] 5016 .GCCCGGGUAGCUCAGUC-GGU--AGAGCAUUG............................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 23: 3007 Fragment Coverage tRNA-Ser-TGA-1:TLE_Z Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-TGA-1 -GCUGCGGUGUCCGAGU--GGUU-AAGGAGAUGGACUUGAAAUCCAUU-G-CACAGGUUCAAGUCCUGUCCGCAGCGCCA [1] 3007 ..............................................................GUCCUGUCCGCAGCGCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 24: 3013 Fragment Coverage tRNA-Arg-CCT-1:TLE_Z Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-CCT-1 -GCCCCAGUGGCCUAAU--GGAU-AAGGCAUCGGCCUCCUAAGCCGGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACCA [1] 3013 ..........................................................UCGAGUCCCAUCUGGGGUACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 25: 3020 Fragment Coverage tRNA-Leu-TAG-1:TLE_Z Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-TAG-1 -GGCAGCGUGGCCGAGC--GGUCUAAGGCGCUGGUUUUAGGCACCAGU-G-CGUGGGUUCGAAUCCCACCGCUGUCACCA [1] 3020 ..............................................................AUCCCACCGCUGUCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 26: 3025 Fragment Coverage tRNA-Thr-TGT-2:TLE_Z Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-TGT-2 -GCCUCUUUAGCUCAGU--GGC--AGAGCACUGGUCUUGUAAACCAGGGGUCGUGAGUUCAAUCCUCACAGGAGGCACCA [1] 3025 .............................................................AUCCUCACAGGAGGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 27: 3029 Fragment Coverage tRNA-His-GTG-1:TLE_Z Fragment Aminos His Fragment Alignment # STOCKHOLM 1.0 tRNA-His-GTG-1 GGCCGUGAUCGUCUAGU--GGUU-AGGACCCCACGUUGUGGCCGUGGUAA-CCCAGGUUCGAAUCCUGGUCACGGCACCA [1] 3029 ..........................................................UCGAAUCCUGGUCACGGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 28: 3032 Fragment Coverage tRNA-Ala-CGC-1:TLE_Z Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-CGC-1 -GGGGACGUAGCUCAGU--GGU--AGAGCGCUCGCUUCGCAUGUGAGAAGUCCCGGGUUCAAACCCCGGCGUCUCCACCA [1] 3032 ..............................................................ACCCCGGCGUCUCCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 29: 3037 Fragment Coverage tRNA-Met-CAT-1:TLE_Z Fragment Aminos Met Fragment Alignment # STOCKHOLM 1.0 tRNA-Met-CAT-1 -GCCUCGGUGGCGCAGUU-GGC--AGCGCGUAAGUCUCAUAAUCUUAAGGUCGUGAGUUCGAGCCUCACCCGGGGCACCA [1] 3037 ..........................................................UCGAGCCUCACCCGGGGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 30: 3038 Fragment Coverage tRNA-Asn-GTT-1:TLE_Z Fragment Aminos Asn Fragment Alignment # STOCKHOLM 1.0 tRNA-Asn-GTT-1 -GCCUCCGUGGCGCAAUU-GGUU-AGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGUCCACCCGGGGGCGCCA [1] 3038 ..........................................................UCGAGUCCACCCGGGGGCGCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 31: 3040 Fragment Coverage tRNA-Gln-CTG-1:TLE_Z tRNA-Gln-CTG-2:TLE_Z Fragment Aminos Gln Fragment Alignment # STOCKHOLM 1.0 tRNA-Gln-CTG-1 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGAACCUCCA [1] tRNA-Gln-CTG-2 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCAGGACUCUGAAUCCUGCGA-UCCGAGUUCAAAUCUCGGUGGAACCUCCA [2] 3040 .............................................................AAUCUCGGUGGAACCUCCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 32: 3041 Fragment Coverage tRNA-Val-TAC-1:TLE_Z Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-TAC-1 -GGUUCCAUAGUGUAGC--GGUU-AUCACGUCUGCUUUACACGCAGAAGGUCUCCGGUUCGAUCCCGGAUGGAACCACCA [1] 3041 .............................................................AUCCCGGAUGGAACCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 33: 3045 Fragment Coverage tRNA-Gln-TTG-2:TLE_Z tRNA-Gln-CTG-4:TLE_Z tRNA-Gln-TTG-1:TLE_Z tRNA-Gln-CTG-3:TLE_Z Fragment Aminos Gln Fragment Alignment # STOCKHOLM 1.0 tRNA-Gln-CTG-3 -GGUUCUAUGGUGUAAU--GGUU-AGCACUCAGGACUCUGAAUCCUGCGA-UCCGAGUUCAAAUCUCGGUAGAACCUCCA [1] tRNA-Gln-CTG-4 -GGUUCUAUGGUGUAAU--GGUU-AGCACUUUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUAGAACCUCCA [2] tRNA-Gln-TTG-1 -GGUUCUAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUAGAACCUCCA [3] tRNA-Gln-TTG-2 -GGUUCUAUGGUGUAAC--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUAGAACCUCCA [4] 3045 .............................................................AAUCUCGGUAGAACCUCCA [1,2,3,4] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 34: 3047 Fragment Coverage tRNA-iMet-CAT-1:TLE_Z tRNA-iMet-CAT-2:TLE_Z Fragment Aminos iMet Fragment Alignment # STOCKHOLM 1.0 tRNA-iMet-CAT-1 -AGCAGAGUGGCGCAGU--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUACCA [1] tRNA-iMet-CAT-2 -AGCAGAGUGGCGCAGU--GGA--AGCGUGCUGGGCCCAUAACUCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUACCA [2] 3047 ..........................................................UCGAAACCUUGCUCUGCUACCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ //