Fragment Cluster 1: 1001 Fragment Coverage tRNA-Leu-TAA-2-1: Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-TAA-2-1 UAUCAGGCGAGCAAAAGAUAUAUGCUAAUUUUUGACAGCAGGUUCUCUCAGCCAGGUUGGCCGAGC--GGUCUAAGGCGCCAGAUUUAAGCUCUGGU-G-CGUGGGUUCGAACCCCACACCUGGCAAAAGUAAAAUUUGUUUUUUUUUUUAGAAUGACUCUUUUAAUAACAUUAAU [1] 1001 ..............................................................................................................................AAAGUAAAAUUUGUUUU................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 2: 1002 Fragment Coverage tRNA-Pro-AGG-1-4: Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-AGG-1-4 UCUUUUCGUGCUGUGAUAUGAGUAAGCUUUUUGACCAACGUAAGACAACUGGCUCGUUGGUCUAGG--GGU--AUGAUUUCCGCUUAGGGUGCGGGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCAAGAGAAAAGAACUUUUUGUUUCAAAUUAUAAACUUUGCUUAUACUUUUU [1] 1002 ..............................................................................................................................AAGAGAAAAGAACUUUU................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 3: 1003 Fragment Coverage tRNA-Pro-AGG-1-3: Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-AGG-1-3 ACUAUUACUGCGCAAAAUUGGUCUGAUUAUGUGAGUCGCGACGAUCACUUGGCUCGUUGGUCUAGG--GGU--AUGAUUUCCGCUUAGGGUGCGGGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCAAGAUGAUUAUCUAUUUUUUUCCAAUGGUGGUCUUAAAAGAUAGUAAAUG [1] 1003 ..............................................................................................................................AAGAUGAUUAUCUAUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 4: 1004 Fragment Coverage tRNA-Pro-AGG-1-2: Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-AGG-1-2 AUGAAGUGCCCGCCAUAGCAAAGCGGAUUUUUAGCGCUUGUUUACCAACUGGCUCGUUGGUCUAGG--GGU--AUGAUUUCCGCUUAGGGUGCGGGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCAAGAUGGAGUAGUUUUUUUGUGUUUAUUUUUUAUUUCCUUUAACUUCCCA [1] 1004 ..............................................................................................................................AAGAUGGAGUAGUUUU.................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 5: 1005 Fragment Coverage tRNA-Pro-CGG-2-3: Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-CGG-2-3 AGAGGGCUCGCACAUUAAAAAGCGUCAUUCUGAUCGCUCCCAGUACCGCAGGCUCGUUGGUCUAGA--GGU--AUGAUUCUCGCUUCGGGUGCGAGAGGUCCCGGGUUCAAUUCCCGGACGAGCCCAAGUUGACGUCGGUUGUAAUUUUUUUUUGUUUUUUAAAUAAUUGCAAUGU [1] 1005 ..............................................................................................................................AAGUUGACGUCGGUUGUAAUUUU........................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 6: 1006 Fragment Coverage tRNA-Ala-CGC-1-2: Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-CGC-1-2 GCGAAAGUGGUUCUGAUUCUAGUUGAUAAUUGGUCACCAGGAAGACGCAAGGGGACGUAGCUCAGU--GGU--AGAGCGCUCGCUUCGCAUGUGAGAAGUCCCGGGUUCAAACCCCGGCGUCUCCAACAGAGUUGUCAAUUAUUUUUUUGGACUAAGUUUCAAAUGUUGGUUGGAU [1] 1006 ..............................................................................................................................ACAGAGUUGUCAAUUAUUUU.............................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 7: 1007 Fragment Coverage tRNA-Glu-CTC-3-8: Fragment Aminos Glu Fragment Alignment # STOCKHOLM 1.0 tRNA-Glu-CTC-3-8 GGAUUUCUUGUAAAACUAUAACAAUUAUAGUUGGCUGACACGACACCAAGUCCCAUAUUGUCUAGU--GGUU-AGGAUAUCCGGCUCUCACCCGGAAGG-CCCGGGUUCAAUUCCCGGUAUGGGAAACUACUGUGGAGACAUUUUUUUCUCAACUCAUCCAUACUUGUAUUUUUGG [1] 1007 ..............................................................................................................................ACUACUGUGGAGACAUUUU............................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 8: 1008 Fragment Coverage tRNA-Glu-CTC-3-9: Fragment Aminos Glu Fragment Alignment # STOCKHOLM 1.0 tRNA-Glu-CTC-3-9 CAACGAGUUGCUUCGCUUGUAUACACUUUUUCGCCGCGACGAAUCGCAAGUCCCAUAUUGUCUAGU--GGUU-AGGAUAUCCGGCUCUCACCCGGAAGG-CCCGGGUUCAAUUCCCGGUAUGGGAAACUUAUGUGGAUUUAUUUUUUUUUUAAGAGCUAUUGUGGGUUAGAAAAAA [1] 1008 ..............................................................................................................................ACUUAUGUGGAUUUAUUUU............................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 9: 1009 Fragment Coverage tRNA-Ser-AGA-2-4: Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-AGA-2-4 UUCUCCCAUGCAAUCAACAUUAGUUGCCAAUUUGCCGAGUCAUACCAACAGCAGUCGUGGCCGAGC--GGUU-AAGGCGUCUGACUAGAAAUCAGAU-G-CGUAGGUUCGAAUCCUACCGACUGCGAGAAGGUUUACGGAUUUUCUUUAUUUUUCAACAUUCUCUAUUCUAUUCUC [1] 1009 ..............................................................................................................................AGAAGGUUUACGGAUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 10: 1010 Fragment Coverage tRNA-Ile-TAT-1-1: Fragment Aminos Ile Fragment Alignment # STOCKHOLM 1.0 tRNA-Ile-TAT-1-1 AUUUUCAGGGUCGAGCGUCUUGUUUCGCAUUUGGCGGCGCUCAGUCAACAGCUCCAGUGGCGCAAUU-GGUU-AGCGCACGGUACUUAUAaucaguauucuguguguaugagcuAUGCCGGGGUUGUGAGUUCGAGCCUCACCUGGAGCAAGUCGUUGGUGACUAUAUAUUUUUUGGUCCAGUUUUUUUUUAAUAAGUUU [1] 1010 ......................................................................................................................................................AGUCGUUGGUGACUAUAUAUUUU........................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<______........................_>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***+........................+=====+++++=====+++++++============+.................................................. // Fragment Cluster 11: 1011 Fragment Coverage tRNA-Ser-TGA-1-1: Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-TGA-1-1 GAAUUAUGCAGGGAGAGAUAUCAGUGACAAAUGGAGCGGACUUCAAUAAGGCUGCGGUGUCCGAGU--GGUU-AAGGAGAUGGACUUGAAAUCCAUU-G-CACAGGUUCAAGUCCUGUCCGCAGCGAUAGUGUAGUUGUAACACGUUUUUUUUUUGUCGAACCAAUUUUAACCCGA [1] 1011 ..............................................................................................................................AUAGUGUAGUUGUAACACGUUUU........................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 12: 1012 Fragment Coverage tRNA-Ser-AGA-2-3: Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-AGA-2-3 GUUUCUCUACACCUAAGCUAACACUGGAUUUGACAUCACUAGUUGCAAGAGCAGUCGUGGCCGAGC--GGUU-AAGGCGUCUGACUAGAAAUCAGAU-G-CGUAGGUUCGAAUCCUACCGACUGCGAUGACAAGAGUUACUUUUUUGUUUUUAACUUUUUGCCCAAAAGAACAAUU [1] 1012 ..............................................................................................................................AUGACAAGAGUUACUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 13: 1013 Fragment Coverage tRNA-Thr-AGT-1-7: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-AGT-1-7 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACAAGACAUGUGGCGCCGUGGCUUAGUU-GGUU-AAAGCGCCUGUCUAGUAAACAGGAGAUCGUGAGUUCGAAUCUCGCCGGGGCCUAUGCUUCUGAAAGCAUUUACUUUUUUCUAUAUUAUAUUUUUGCUUUGCUA [1] 1013 ..............................................................................................................................AUGCUUCUGAAAGCAUUUACUUUU.......................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 14: 1014 Fragment Coverage tRNA-Leu-TAA-4-1: Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-TAA-4-1 AAUGGCAGCCCCGUUUGGUUUUAUAGCUUUUUUGGCGACGAUUCUGCACAGUCAGGUUGGCCGAGC--GGUCUAAGGCGCCAGAUUUAAGCUCUGGU-G-CGUGGGUUCGAACCCCACACCUGACAAUUGUUGAGUUCCUUUUUUAGUUACUUAUUUUAUUUGUUUGCUAAUUAGU [1] 1014 ..............................................................................................................................AUUGUUGAGUUCCUUUU................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 15: 1015 Fragment Coverage tRNA-Arg-TCG-4-1: Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-TCG-4-1 GUACCCAUUUUGAGCUUUAUAGGGCAGGGACAAACGGGACGUUUCAACCGGACCGUGUGGCCUAAA--GGAU-AAGGCGUCGGACUUCGAAUCCGAAGAUUGCAGGUUCGAGUCCUGUCACGGUCGAUUUAACGGCUGAAUGCAUUUUUUGCACCGACUGGCUUGUUUAAACUUCU [1] 1015 ..............................................................................................................................AUUUAACGGCUGAAUGCAUUUU............................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 16: 1016 Fragment Coverage tRNA-Val-TAC-1-2: Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-TAC-1-2 UUUCCGGGCUUGCUGAAGAAAACUGAAAUUUGGCCGACCUACUCAUAACAGGUUCCAUAGUGUAGC--GGUU-AUCACGUCUGCUUUACACGCAGAAGGUCUCCGGUUCGAUCCCGGAUGGAACCACGUUGACAAAAGUAUAUAUUUUUUUAAAUUCAUUAUAUGUUUAUUAAUUU [1] 1016 ..............................................................................................................................CGUUGACAAAAGUAUAUAUUUU............................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 17: 1017 Fragment Coverage tRNA-Val-TAC-1-1: Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-TAC-1-1 CCUUUUUUGGCGCUGUGCUUUGUUUGCGUUGUGUCAAGCGAUUGGCAUCUGGUUCCAUAGUGUAGC--GGUU-AUCACGUCUGCUUUACACGCAGAAGGUCUCCGGUUCGAUCCCGGAUGGAACCAGGAGGAAGUAACUUUUUUUUAUUUUUAUUUUUUUAAACGCUUACUAAGUG [1] 1017 ..............................................................................................................................GGAGGAAGUAACUUUU.................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 18: 1018 Fragment Coverage tRNA-Trp-CCA-2-5: Fragment Aminos Trp Fragment Alignment # STOCKHOLM 1.0 tRNA-Trp-CCA-2-5 CACUUGAGUAGCUUCGUGGUUGUGGGACAUUGGGCGAACUUUUCAAUAACGACUCCGUGGCGCAAC--GGU--AGCGCGUCCGACUCCAGAUCGGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCAGGCGAUGAUGAAUUCCUUUUUCGUACUUUUUUUUUACUACACCAUUUCAA [1] 1018 ..............................................................................................................................GGCGAUGAUGAAUUCCUUUU.............................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 19: 1019 Fragment Coverage tRNA-Ile-TAT-1-2: Fragment Aminos Ile Fragment Alignment # STOCKHOLM 1.0 tRNA-Ile-TAT-1-2 UUUUCCGGAAUCUGGGGGUCUCCUUGAGCUUUUGGCGGCGCCCGGGCAUUGCUCCAGUGGCGCAAUU-GGUU-AGCGCACGGUACUUAUAaucaguauucuguguguauaugagcuAUGCCGGGGUUGUGAGUUCGAGCCUCACCUGGAGCAGGUCAAUUUGGUGACUUUUGUUUUUGUACCACCACUUUAUGUUUUUUGGU [1] 1019 ........................................................................................................................................................GGUCAAUUUGGUGACUUUU............................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<______.........................._>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***+..........................+=====+++++=====+++++++============+.................................................. // Fragment Cluster 20: 1020 Fragment Coverage tRNA-iMet-CAT-1-5: Fragment Aminos iMet Fragment Alignment # STOCKHOLM 1.0 tRNA-iMet-CAT-1-5 UCCACUUCUCGUUUGUAAUUAACUAGCCUUGAGGUCCAGUACUUCAAGCAAGCAGAGUGGCGCAGU--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUAUGUGGUACAAUUCGCAUGAGCGAAUUUUUUUAUUGCGAAAUUUCGAUGUU [1] 1020 ..............................................................................................................................UGUGGUACAAUUCGCAUGAGCGAAUUUU...................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 21: 1021 Fragment Coverage tRNA-Thr-AGT-1-1: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-AGT-1-1 UUGCGAUGCGAGCAGGCCAAAUAGAAUUUAUAGAACAAGGGCAAACAAGUGGCGCCGUGGCUUAGUU-GGUU-AAAGCGCCUGUCUAGUAAACAGGAGAUCGUGAGUUCGAAUCUCGCCGGGGCCUUUCCAAUCGGGAUGUAUCCUUUUUUUACUUUUUCCAUGUCAGCCGGCUAA [1] 1021 ..............................................................................................................................UUCCAAUCGGGAUGUAUCCUUUU........................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. //