Fragment Cluster 1: 1001 Fragment Coverage tRNA-Ser-TGA-1-1: Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-TGA-1-1 GCGCAGUGGUUGUUACACUAAAGUGUCUCCGCCUGUCGAAUAUUCUCGUGGCAGCGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUGAAAUCCAAU-G-CGCAGGUUCGAACCCUGCUCGCUGCGGAAGCGGGUGCUCUUAUUUUUUCUAUUUUUUUAAAUAAACACCUUCAAAU [1] 1001 ..............................................................................................................................GAAGCGGGUGCUCUUAUUUU.............................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 2: 1003 Fragment Coverage tRNA-Ser-GCT-4-3: Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-GCT-4-3 CCAGAGAAGUGAGAUGCGGAGGGCAGUCUGAACAGCGAGGGCUGUCUGCAGACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGGCUAAGGAAGUCCUGUGCUCAGUUUUGUAGCAUCAAAACUAGGAUUUCUC [1] 1003 ..............................................................................................................................GCUAAGGAAGUCCUGUGCUCAGUUUU........................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 3: 1004 Fragment Coverage tRNA-Asp-GTC-1-1: Fragment Aminos Asp Fragment Alignment # STOCKHOLM 1.0 tRNA-Asp-GTC-1-1 AUCUUACUGCUCCUUGAAGGGCUGUCUGAGAAAAUACACAGCCUAACGACUCCUCGUUAGUAUAGU--GGUU-AGUAUCCCCGCCUGUCACGCGGGAGA-CCGGGGUUCAAUUCCCCGACGGGGAGGUGUGUAGCUGCACUUUUUUGGCGACAGUUAUUAUUUUCUGUAUCAUUCA [1] 1004 ..............................................................................................................................GUGUGUAGCUGCACUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 4: 1005 Fragment Coverage tRNA-Ser-GCT-4-2: Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-GCT-4-2 AGCCCCUUGAUAUUACUCCCUAUAGCAAUCAGGAAACAGUAACUUACCGGGACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGAUGUGGUGGCUUACUUUUGCUUGUAACCAAAGUAAAUUUGCAGAGCAGAA [1] 1005 ..............................................................................................................................AUGUGGUGGCUUACUUU................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 5: 1006 Fragment Coverage tRNA-Arg-ACG-1-2: Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-ACG-1-2 CGGGUACAACCUAGUUUCUUAUGAAAUACCUCGCCCCUAAGGUACGCGCAGGGCCAGUGGCGCAAU--GGAU-AACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCUGGCUCGGUGUAAGCAGGGUCGUUUUACAACUUUCUGACUCCGCAGGAGUAAGGAAA [1] 1006 ..............................................................................................................................GUGUAAGCAGGGUCGUUUU............................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 6: 1007 Fragment Coverage tRNA-Gln-TTG-2-1: Fragment Aminos Gln Fragment Alignment # STOCKHOLM 1.0 tRNA-Gln-TTG-2-1 CAAGGAGGUAUUUAACCACGACUAUACUUACCUACUGUACCCUUGUGGUUGGUCCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCAA-UCCGAGUUCGAAUCUCGGUGGGACCUUUCAAAGGUGAACGUUUUACAGUUCCUGGCUUGGCCUCUGAAUGUGGGAA [1] 1007 ..............................................................................................................................UUCAAAGGUGAACGUUU................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 7: 1008 Fragment Coverage tRNA-Thr-CGT-3-1: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-CGT-3-1 CUAAUUAAGUGCAAUUCGGUCAUAAAAGAAGCCACAGAAUCAGCACGGCUGGCUCUGUGGCUUAGUU-GGCU-AAAGCGCCUGUCUCGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGCGGGGCCUUAGGGUGUGCGUGUUUUUUUUUCUUUCCCCCUUUAAUAAGGGCCGUCUGU [1] 1008 ..............................................................................................................................UAGGGUGUGCGUGUUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 8: 1010 Fragment Coverage tRNA-Val-TAC-3-1: Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-TAC-3-1 UGCCCAGCCUCAUGGCCUCAUAGUCUAGCUUUGAAACUCAGCUAGCCUGUGGUUCCAUAGUGUAGU--GGUU-AUCACAUCUGCUUUACACGCAGAAGGUCCUGGGUUCAAGCCCCAGUGGAACCAUGGUGUGGUCUGUUGUUUUCCUGCCUGUAAUCCUAGCUCCUCGGGAGGCU [1] 1010 ...............................................................................................................................GGUGUGGUCUGUUGUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 9: 1012 Fragment Coverage tRNA-Gly-GCC-1-5: Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-GCC-1-5 CCAGUCGCGUUCCAAUCAUGUUACUGCUUUUCCCCAACUCUUCUAUCGGUGCAUGGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCCAUGCAGCACGAAAAUGUGUUUUGGACCGUGCGCGGGAGGUUGCGGUAAGCCGAGA [1] 1012 ..............................................................................................................................GCACGAAAAUGUGUUUU................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 10: 1013 Fragment Coverage tRNA-Ala-CGC-2-1: Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-CGC-2-1 UUCGCGUUUUUAACAUGACAGGAAUUCUCCGUUACAACCGACUUGUGCCAGGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUCGCAUGUAUGAGGCCCCGGGUUCGAUCCCCGGCAUCUCCAAGGCGAUCACGUAGAUUUUGUUUAAUUCAGCCUCUGGAACAGAAUAUAAG [1] 1013 ...............................................................................................................................GGCGAUCACGUAGAUUUU............................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 11: 1015 Fragment Coverage tRNA-Cys-GCA-2-4: Fragment Aminos Cys Fragment Alignment # STOCKHOLM 1.0 tRNA-Cys-GCA-2-4 ACACCCCUAUUCCAUAGAAAUUAACUCUAAUGACAACGUAGUGGCGUGGCGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCUCUGUGCUCCGGAGUUACCUCGUUUUGUUGGUCUCCGGAGGUCCUCUAAAG [1] 1015 ...............................................................................................................................UGUGCUCCGGAGUUACCUCGUUU.......................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 12: 1020 Fragment Coverage tRNA-Phe-GAA-1-2: Fragment Aminos Phe Fragment Alignment # STOCKHOLM 1.0 tRNA-Phe-GAA-1-2 AACAUAAGUAAUAAAUUCAUUAAGCCUUAUUUUUAAGUGGCGUGGGCGGAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAUGAGAGCGCUCGGUUUUUUGUGCCCACGGCAAUACAAAUAUGGAAUUUUC [1] 1020 ...............................................................................................................................GAGAGCGCUCGGUUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 13: 1023 Fragment Coverage tRNA-Gly-TCC-2-5: tRNA-Gly-TCC-2-4: tRNA-Gly-TCC-2-3: tRNA-Gly-TCC-2-2: Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-TCC-2-2 GCGCUGGUGGGAGCCCCGGGCCGGCGCGGCGGGGCUGCCCGCGCCGUGCGGCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCGGCCAACGCAGCGGGCGGACCUUUUGCGGAGGUCCCCGUCGCGGAGCUCGCGUCGCAGCU [1] tRNA-Gly-TCC-2-3 GCGCUGGUGGGAGCCCCGGGCCGGCGCGGCGGGGCUGCCCGCGCCGUGCGGCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCGGCCAACGCAGCGGGCGGACCUUUUGCGGAGGUCCCCGUCGCGGAGCUCGCGUCGCAGCU [2] tRNA-Gly-TCC-2-4 GCGCUGGUGGGAGCCCCGGGCCGGCGCGGCGGGGCUGCCCGCGCCGUGCGGCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCGGCCAACGCAGCGGGCGGACCUUUUGCGGAGGUCCCCGUCGCGGAGCUCGCGUCGCAGCU [3] tRNA-Gly-TCC-2-5 GCGCUGGUGGGAGCCCCGGGCCGGCGCGGCGGGGCUGCCCGCGCCGUGCGGCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCGGCCAACGCAGCGGGCGGACCUUUUGCGGAGGUCCCCGUCGCGGAGCUCGCGUCGCAGCU [4] 1023 ..............................................................................................................................GCGGGCGGACCUUUU................................... [1,2,3,4] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 14: 1024 Fragment Coverage tRNA-Lys-CTT-2-2: Fragment Aminos Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Lys-CTT-2-2 ACUCCGACUCUGAUCUAGAAUGAAAAAUUGUUGAGAUACGGUCAUCGGGCGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCAACUGGUCGUUUUAGUCCUAAAUCUACGACUACUAGCCAUACCUAAAA [1] 1024 ..............................................................................................................................GCAACUGGUCGUUUU................................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 15: 1025 Fragment Coverage tRNA-Ile-AAT-5-3: Fragment Aminos Ile Fragment Alignment # STOCKHOLM 1.0 tRNA-Ile-AAT-5-3 CAACAAACAUUUUGCUUUUUUAAAAUUGAAAGAACAACUGUUUUCCGGGUGGCCGGUUAGCUCAGUU-GGUU-AGAGCGUGGUGCUAAUAACGCCAAGGUCGCGGGUUCGAUCCCCGUACGGGCCACGAGGGUUCUCACCUUCUCUCUCCGAUUUUGCCGCAGUCACUUCACAUCC [1] 1025 ...............................................................................................................................GAGGGUUCUCACCUUCUCUCUCCGAUUU..................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 16: 1026 Fragment Coverage tRNA-Ile-AAT-5-2: Fragment Aminos Ile Fragment Alignment # STOCKHOLM 1.0 tRNA-Ile-AAT-5-2 GGAUCAGGUAUGAUUUAAAUAAACAUAAGAAAAGACCCUCCCACCAAGGAGGCCGGUUAGCUCAGUU-GGUU-AGAGCGUGGUGCUAAUAACGCCAAGGUCGCGGGUUCGAUCCCCGUACGGGCCACUUCCGUGGGUUUGUUUUUUUUUUUUUUCUUCUUUUUCGUUUUUAUUUUA [1] 1026 ...............................................................................................................................UUCCGUGGGUUUGUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 17: 1027 Fragment Coverage tRNA-iMet-CAT-1-3: Fragment Aminos iMet Fragment Alignment # STOCKHOLM 1.0 tRNA-iMet-CAT-1-3 UGACAAGAGUAAUGUUGAAACAGCAGAGUGGCGGAGCGGACUGUCGAGACAGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUAUAUGGCCGCAUAUAUUUUACUUGAAGACUAGGACCCUACAGAAAAGAGGU [1] 1027 ...............................................................................................................................AUGGCCGCAUAUAUUU................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 18: 1028 Fragment Coverage tRNA-Asp-GTC-2-6: Fragment Aminos Asp Fragment Alignment # STOCKHOLM 1.0 tRNA-Asp-GTC-2-6 UAGCGAGUAACUUCACAGGGAUUUCCUAAGAGCUCCAUUUUCACGUCAAUUCCUCGUUAGUAUAGU--GGUG-AGUAUCCCCGCCUGUCACGCGGGAGA-CCGGGGUUCGAUUCCCCGACGGGGAGGAGGCUUAAACUUUUUUUUAGAAAAGCACACUUCCGGUAAACACAGUCUC [1] 1028 ..............................................................................................................................GAGGCUUAAACUUUU................................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 19: 1029 Fragment Coverage tRNA-Ala-TGC-2-1: Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-TGC-2-1 AUACAGUAUAUUUUUAAAAACUUUUUUUGGAACAACAAGGGUCUAUGUGUGGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCCCGGGUUCGAUCCCCGGCAUCUCCAAUAGGUAUUAAGGUUUUAGCGCUGAUUCUUGUUCAACGUACGUGCUGCUG [1] 1029 ..............................................................................................................................AUAGGUAUUAAGGUUUU................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 20: 1030 Fragment Coverage tRNA-Ser-AGA-2-5: Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-AGA-2-5 CGCUUAUGCAGAGUCUACAUGCACUCUCACCGCAAAAAUUCACACAGCCAGUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGGGAAUGUCAGCUUUUUGCCGUCAACACUUACUUUUUGUGUUUUAGAGCGU [1] 1030 ..............................................................................................................................GGAAUGUCAGCUUUU................................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 21: 1031 Fragment Coverage tRNA-Tyr-GTA-5-1: Fragment Aminos Tyr Fragment Alignment # STOCKHOLM 1.0 tRNA-Tyr-GTA-5-1 UCCGGUUUUUCUGUGCUGAACCUCAGGGGACGCCGACACACGUACACGUCCCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGcuacuuccucagcaggagacAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGAGACAAGUGCGGUUUUUUUCUCCAGCUCCCGAUGACUUAUGGCACUUUCCU [1] 1031 ...................................................................................................................................................ACAAGUGCGGUUUUUU................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<______...................._>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***+....................+=====+++++=====+++++++============+.................................................. // Fragment Cluster 22: 1032 Fragment Coverage tRNA-Leu-TAA-3-1: Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-TAA-3-1 CGCCUAGUGUUACCCGAGUUGCUUUAAAAUAAAACAUUGUUUUAUCAGUUACCAGAAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-G-CGUGGGUUCGAACCCCACUUCUGGUAAAGAGGAGUUGUUUUUCCUGGCAAAAACCUUUUUUCCUAAUCCUUGACAA [1] 1032 ..............................................................................................................................AAGAGGAGUUGUUUU................................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 23: 1033 Fragment Coverage tRNA-Arg-ACG-1-3: Fragment Aminos Arg Fragment Mismatches A:+13:G:1 G:+8:U:1 Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-ACG-1-3 CUGCAGUAUAACCUUGAAGUACCAUCACGGAGAGAAACAGUGCCAUCUCAGGGCCAGUGGCGCAAU--GGAU-AACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCUGGCUCGGUGGGGUUCCUCGCAGCUUCGCUGCGUGAGCAUUUUGUAAUUUUCCUUUC [1] 1033 ..............................................................................................................................GUGGGGUGCCUCACAGCUUCGCUGCGUGAGCAUUUU.............. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 24: 1034 Fragment Coverage tRNA-Arg-TCG-1-1: Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-TCG-1-1 GGCGGAGGUGACGUUUUUAUAAGUUGCUCAAGAGACGGUAACAACCGACGGGCCGCGUGGCCUAAU--GGAU-AAGGCGUCUGACUUCGGAUCAGAAGAUUGCAGGUUCGAGUCCUGCCGCGGUCGAAGGGAGGUUAUGAUUAACUUUUAGUUUAUUCCUCCCUCAGGAACGAAGU [1] 1034 ...............................................................................................................................AGGGAGGUUAUGAUUAACUUUU........................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 25: 1035 Fragment Coverage tRNA-Thr-CGT-2-1: Fragment Aminos Thr Fragment Mismatches G:+15:A:1 Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-CGT-2-1 CACGGGAGCGGCGCCAGGAUAGAGGUUCGCGAGACCGCCAUCGCAACGCAGGCGCGGUGGCCAAGU--GGU--AAGGCGUCGGUCUCGUAAACCGAAGAUCACGGGUUCGAACCCCGUCCGUGCCUGAUAUCCAACCUUCAGCUAUAGGGUGGAGACUUUUUAGGAGUGGUCGACU [1] 1035 ..............................................................................................................................GAUAUCCAACCUUCGGCUAUAGGGUGGAGACUUUUU.............. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 26: 1036 Fragment Coverage tRNA-Leu-AAG-2-4: Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-AAG-2-4 GCAAAAGCAAAAGCAUUAAGUAGCUUUCUGGCAUAAACAUAUUGCAGCUGGGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCGAAUCCCACCGCUGCCAGGGUUGCUGUCUUUUUGUCCCCGCUGCAUACACUCCUGGCUCAGUUUUGC [1] 1036 ..............................................................................................................................GGGUUGCUGUCUUUU................................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 27: 1037 Fragment Coverage tRNA-Leu-TAG-3-1: Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-TAG-3-1 GCCUCCGUCAUCACACUAAUAUGCCGGCAUAGGAAGCCCUACGAUCGGGAGGUAGCGUGGCCGAGU--GGUCUAAGGCGCUGGAUUUAGGCUCCAGU-G-CGUGGGUUCGAAUCCCACCGCUGCCACACCUCAGAAGGUCUCACUUUUCUAUCCAUAAACCAUCUCUUUAUGUAGU [1] 1037 ...............................................................................................................................ACCUCAGAAGGUCUCACUUU............................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 28: 1038 Fragment Coverage tRNA-Arg-CCT-1-1: Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-CCT-1-1 AGGGGACACUCGCUUAUGAGGGGAAGGGAUGGCACGGCCACGUGCCCCAAGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCACCUGGGGUAGAGGUGAAAGUUCCUUUUACGGAAUUUUUUAUUUCUUUUCUCUUCCCUUC [1] 1038 ...............................................................................................................................AGGUGAAAGUUCCUUU................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 29: 1039 Fragment Coverage tRNA-Arg-CCT-2-1: Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-CCT-2-1 ACUAUGGUUGAACACCUAUCAAGGAGCACGUGGGUUUAGCGUCUUACCGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCACCUGGGGUGUCGAGAGGGGCUGUGCUCGCAAGGUUUCUUUUGGUGCCGGCAGCCAGAGA [1] 1039 ..............................................................................................................................UCGAGAGGGGCUGUGCUCGCAAGGUUUCUUU................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 30: 1040 Fragment Coverage tRNA-Ile-AAT-4-1: Fragment Aminos Ile Fragment Alignment # STOCKHOLM 1.0 tRNA-Ile-AAT-4-1 AUGGUAGCAAUACCCUAUAUUAAGAUUUGAAGUAGACCCGGAAAGUUAGUGGCCGGUUAGCUCAGUU-GGUU-AGAGCGUGGUGCUAAUAACGCCAAGGUCGCGGGUUCGAACCCCGUACGGGCCAGUGGGUGGCUUUUUUUUGUGUGUGUUUUGUUUUCUGACCCUCUGCUGUUA [1] 1040 ..............................................................................................................................GUGGGUGGCUUUUUU................................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 31: 1041 Fragment Coverage tRNA-Gly-TCC-1-1: Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-TCC-1-1 CCAUGAUCCCCCACUAUUAAGGAUAUCCGGAGAGGAUGCUACCUAUCAGGGCGUUGGUGGUAUAGU--GGUU-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCGGCCAACGCAUGCGGUACCACUUUUGCGAGUUUGAAAUUUUCAUUUUAGUUUUGAGACGG [1] 1041 ..............................................................................................................................UGCGGUACCACUUUU................................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 32: 1042 Fragment Coverage tRNA-Thr-AGT-1-3: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-AGT-1-3 CAUAUGGUAAAUAGUAAUGAAGAAUAGUUUAGGAAAGUACCUGUACGGGUGGCGCCGUGGCUUAGUU-GGUU-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGCGGUGCCUCAACCGAGCGUCCAAGCUCUUUCCAUUUUUGCUCCUGCACUUUUGUGCUC [1] 1042 ...............................................................................................................................AACCGAGCGUCCAAGCUCUUUCCAUUUU..................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. //