Fragment Cluster 1: 5011b,3037a,3037b,5011a Fragment Coverage tRNA-Ala-TGC-8:A_DSLE tRNA-Ala-TGC-2:A_DSLE_TLE_Z tRNA-Ala-TGC-7:A_DSLE tRNA-Ala-TGC-4:A_DSLE_TLE_Z tRNA-Ala-CGC-1:A_DSLE_TLE_Z tRNA-Ala-CGC-2:A_DSLE_TLE_Z tRNA-Ala-TGC-3:A_DSLE_TLE_Z tRNA-Ala-AGC-3:A_DSLE tRNA-Ala-AGC-8:A_DSLE Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-AGC-3 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUAGCAUGCAUGAGGUCCUGGGUUCGAUCCCCA.GCAUCUCCACCA [1] tRNA-Ala-AGC-8 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUAGCAUGCAUGAGGUCCUGGGUUCGAUCUCCAgGUUUUUUU-CCA [2] tRNA-Ala-CGC-1 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUCGCAUGUAUGAGGCCCCGGGUUCGAUCCCCG.GCAUCUCCACCA [3] tRNA-Ala-CGC-2 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCGCGCUUCGCAUGUGUGAGGUCCCGGGUUCAAUCCCCG.GCAUCUCCACCA [4] tRNA-Ala-TGC-2 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGCCCCGGGUUCGAUCCCCG.GCAUCUCCACCA [5] tRNA-Ala-TGC-3 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGCCCCGGGUUCGAUCCCCG.GCAUCUCCACCA [6] tRNA-Ala-TGC-4 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGCCCCGGGUUCAAUCCCCG.GCAUCUCCACCA [7] tRNA-Ala-TGC-7 -GGGGAUGUAGCUCAGU--GGU--AGAGCACAUGCUUUGCAUGUAUGGGGUCCUGGGUUCGAUUCCCG.GCAUCUCCACCA [8] tRNA-Ala-TGC-8 -GGGGAUGUAGCUCAGU--GGU--AGAGCACAUGCUUUGCAUGUAUGGGGUCCUGGGUUCAAUUCCCG.GCAUCUCCACCA [9] 5011a .GGGGAUGUAGCUCAGU--GG............................................................ [1,2,3,4,5,6,7,8,9] 5011b .GGGGAUGUAGCUCAGU--GGU--AGAGC.................................................... [1,2,3,4,5,6,7,8,9] 3037b ..........................................................UCGAUCCCCG.GCAUCUCCACCA [3,5,6] 3037a ..............................................................UCCCCG.GCAUCUCCACCA [3,4,5,6,7] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>.>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++====.========++++ // Fragment Cluster 2: 3003b,3003a,5009b,5009a Fragment Coverage tRNA-Pro-CGG-1:A_DSLE_TLE_Z tRNA-Pro-TGG-2:A_DSLE_TLE_Z tRNA-Pro-TGG-1:A_DSLE_TLE_Z tRNA-Pro-TGG-4:A_DSLE tRNA-Pro-AGG-1:A_DSLE_TLE_Z Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-AGG-1 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [1] tRNA-Pro-CGG-1 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [2] tRNA-Pro-TGG-1 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGGUUUGGGUCCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [3] tRNA-Pro-TGG-2 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [4] tRNA-Pro-TGG-4 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCACUUUGGGUGUGAGAGGUCCUGGGUUCAAAUCCCAGGUGAGCCCCCA [5] 5009a .GGCUCGUUGGUCUAGG--G............................................................ [1,2,3,4,5] 5009b .GGCUCGUUGGUCUAGG--GGU--AUG..................................................... [1,2,3,4,5] 3003b ..........................................................UCAAAUCCCGGACGAGCCCCCA [1,2,3,4] 3003a ..............................................................AUCCCGGACGAGCCCCCA [1,2,3,4] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 3: 3004b,3050a,3004a,5012b Fragment Coverage tRNA-Cys-GCA-2:A_DSLE_TLE_Z tRNA-Cys-GCA-3:A_DSLE_TLE_Z tRNA-Cys-GCA-7:TLE_Z tRNA-Cys-GCA-5:TLE_Z tRNA-Cys-GCA-1:A_DSLE Fragment Aminos Cys Fragment Alignment # STOCKHOLM 1.0 tRNA-Cys-GCA-1 -GGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCAGGUGCCCCCUCCA [1] tRNA-Cys-GCA-2 -GGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUCCA [2] tRNA-Cys-GCA-3 -GGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCUCCA [3] tRNA-Cys-GCA-5 -GGGGGUAUAGCUCAGG--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUCCA [4] tRNA-Cys-GCA-7 -GGGGGUAUAGCUCAGG--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCUCCA [5] 5012b .GGGGGUAUAGCUCAGU--GGU--AGAGC................................................... [1,2,3] 3004b ..........................................................UCAAAUCCGGGUGCCCCCUCCA [2,3,4,5] 3050a ..............................................................AUCCGGGUGCCCCCUCCA [2,3,4,5] 3004a ...............................................................UCCGGGUGCCCCCUCCA [2,3,4,5] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 4: 3027a,3027b Fragment Coverage tRNA-Ser-CGA-2:TLE_Z Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-CGA-2 -GUCACGGUGGCCGAGU--GGUU-AAGGCGUUGGACUCGAAAUCCAAU-G-CACAGGUUCGAAUCCUGUUCGUGACGCCA [1] 3027b ..........................................................UCGAAUCCUGUUCGUGACGCCA [1] 3027a ..............................................................AUCCUGUUCGUGACGCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 5: 5021a,3028b Fragment Coverage tRNA-Glu-TTC-2:A_DSLE_TLE_Z Fragment Aminos Glu Fragment Alignment # STOCKHOLM 1.0 tRNA-Glu-TTC-2 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUCCCGGUAUGGGAACCA [1] 5021a .UCCCAUAUGGUCUAGC--GGUU-AGG..................................................... [1] 3028b ..........................................................UCGACUCCCGGUAUGGGAACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 6: 5018a,5018b,5017a,5017b,3018b,3018a,3017b,3017a Fragment Coverage tRNA-Leu-CAG-4:TLE_Z tRNA-Leu-CAG-1:A_DSLE_TLE_Z tRNA-Leu-CAG-3:A_DSLE_TLE_Z tRNA-Leu-CAG-2:A_DSLE_TLE_Z tRNA-Leu-CAA-3:A_DSLE_TLE_Z tRNA-Leu-CAA-1:A_DSLE_TLE_Z tRNA-Leu-CAA-4:A_DSLE_TLE_Z tRNA-Leu-CAA-2:A_DSLE_TLE_Z Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-CAA-1 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G-CGUGGGUUCGAAUCCCACUUCUGACACCA [1] tRNA-Leu-CAA-2 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G-CGUGGGUUCGAAUCCCACUUCUGACACCA [2] tRNA-Leu-CAA-3 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G-CGUGGGUUCGAAUCCCACUUCUGACACCA [3] tRNA-Leu-CAA-4 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G-CGUGGGUUCGAAUCCCACUUCUGACACCA [4] tRNA-Leu-CAG-1 -GUCAGGAUGGCCGAGC--GGUCUAAGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUCCUGACACCA [5] tRNA-Leu-CAG-2 -GUCAGGAUGGCCGAGC--GGUCUAAGGCGCUGCGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUUCUGACACCA [6] tRNA-Leu-CAG-3 -GUCAGGAUGGCCGAGU--GGUCUAAGGAGCUGUGUUCAGGUCGCAGU-G-CGUGGGUUCGAAUCCCACUCCUGACACCA [7] tRNA-Leu-CAG-4 -GUCAGGAUGGCCGAGC--AGUCUAAGGCACUGCGUUCAGGUCGCAGU-G-CGUGGAUUCGAAUCCCACUCCUGACACCA [8] 5018a .GUCAGGAUGGCCGAGU--GG........................................................... [1,2,3,4,7] 5017a .GUCAGGAUGGCCGAGC--GG........................................................... [5,6] 5017b .GUCAGGAUGGCCGAGC--GGUCUAAG..................................................... [5,6] 5018b .GUCAGGAUGGCCGAGU--GGUCUAAGG.................................................... [1,2,3,4,7] 3018b ..........................................................UCGAAUCCCACUUCUGACACCA [1,2,3,4,6] 3017b ..........................................................UCGAAUCCCACUCCUGACACCA [5,7,8] 3018a ..............................................................AUCCCACUUCUGACACCA [1,2,3,4,6] 3017a ..............................................................AUCCCACUCCUGACACCA [5,7,8] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 7: 3036b,3036a Fragment Coverage tRNA-Ala-TGC-1:TLE_Z tRNA-Ala-AGC-2:TLE_Z Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-AGC-2 -GGGGGUGUAGCUCAGU--GGU--AGAGCGCGUGCUUAGCAUGCACGAGGCCCCGGGUUCAAUCCCCGGCACCUCCACCA [1] tRNA-Ala-TGC-1 -GGGGGUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGCAUGAGGCCCCGGGUUCGAUCCCCGGCACCUCCACCA [2] 3036b ..........................................................UCGAUCCCCGGCACCUCCACCA [2] 3036a ..............................................................UCCCCGGCACCUCCACCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 8: 5016b,5016a,3025b,3025a Fragment Coverage tRNA-Ser-TGA-2:A_DSLE_TLE_Z tRNA-Ser-AGA-2:A_DSLE_TLE_Z tRNA-Ser-AGA-1:A_DSLE_TLE_Z Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-AGA-1 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [1] tRNA-Ser-AGA-2 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [2] tRNA-Ser-TGA-2 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [3] 5016a .GUAGUCGUGGCCGAGU--GG........................................................... [1,2,3] 5016b .GUAGUCGUGGCCGAGU--GGUU-AAGG.................................................... [1,2,3] 3025b ..........................................................UCGAAUCCUGCCGACUACGCCA [1,2,3] 3025a ..............................................................AUCCUGCCGACUACGCCA [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 9: 3011a,3011b Fragment Coverage tRNA-Ser-TGA-1:TLE_Z Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-TGA-1 -GCAGCGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUGAAAUCCAAU-G-CGCAGGUUCGAACCCUGCUCGCUGCGCCA [1] 3011b ..........................................................UCGAACCCUGCUCGCUGCGCCA [1] 3011a ..............................................................ACCCUGCUCGCUGCGCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 10: 3021b,3021a Fragment Coverage tRNA-Ser-GCT-4:TLE_Z tRNA-Ser-GCT-2:TLE_Z tRNA-Ser-GCT-3:TLE_Z Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-GCT-2 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CAUGGGUUCGAAUCCCAUCCUCGUCGCCA [1] tRNA-Ser-GCT-3 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [2] tRNA-Ser-GCT-4 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [3] 3021b ..........................................................UCGAAUCCCAUCCUCGUCGCCA [1,2,3] 3021a ..............................................................AUCCCAUCCUCGUCGCCA [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 11: 3016a,3016b Fragment Coverage tRNA-Ser-GCT-1:TLE_Z Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-GCT-1 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCACCUUCGUCGCCA [1] 3016b ..........................................................UCGAAUCCCACCUUCGUCGCCA [1] 3016a ..............................................................AUCCCACCUUCGUCGCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 12: 5010a,3030a,3030b Fragment Coverage tRNA-Arg-ACG-3:A_DSL_TLE_Z tRNA-Arg-ACG-2:A_DSL tRNA-Arg-ACG-1:A_DSL_TLE_Z Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-ACG-1 -GGGCCAGUGGCGCAAU--GGAU-AACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCUGGCUCGCCA [1] tRNA-Arg-ACG-2 -GGGCCAGUGGCGCAAU--GGAU-AACGCGUCUGACUACGGAUCAGAAGAUUGUAGGUUCGACUCCUACCUGGCUCGCCA [2] tRNA-Arg-ACG-3 -GGGCCAGUGGCGCAAU--GGAU-AACGCGUCUGACUACGGAUCAGAAGAUUCUAGGUUCGACUCCUGGCUGGCUCGCCA [3] 5010a .GGGCCAGUGGCGCAAU--GG........................................................... [1,2,3] 3030b ..........................................................UCGACUCCUGGCUGGCUCGCCA [1,3] 3030a ..............................................................CUCCUGGCUGGCUCGCCA [1,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 13: 3001a,3001b Fragment Coverage tRNA-Asn-GTT-3:TLE_Z tRNA-Asn-GTT-2:TE_Z Fragment Aminos Asn Fragment Alignment # STOCKHOLM 1.0 tRNA-Asn-GTT-2 -GUCUCUGUGGCGCAAUU-GGUU-AGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCAAGCCCACCCAGGGACGCCA [1] tRNA-Asn-GTT-3 -GUCUCUGUGGCGCAAUC-GGUU-AGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACGCCA [2] 3001b ...........................................................CGAGCCCACCCAGGGACGCCA [2] 3001a ................................................................CCACCCAGGGACGCCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 14: 3026b,3026a Fragment Coverage tRNA-Ser-CGA-3:TLE_Z tRNA-Ser-CGA-1:TLE_Z Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-CGA-1 -GCUGUGAUGGCCGAGU--GGUU-AAGGCGUUGGACUCGAAAUCCAAU-G-CGCAGGUUCGAAUCCUGCUCACAGCGCCA [1] tRNA-Ser-CGA-3 -GCUGUGAUGGCCGAGU--GGUU-AAGGCGUUGGACUCGAAAUCCAAU-G-CGCAGGUUCAAAUCCUGCUCACAGCGCCA [2] 3026b ..........................................................UCGAAUCCUGCUCACAGCGCCA [1] 3026a ..............................................................AUCCUGCUCACAGCGCCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 15: 3002a,3002b Fragment Coverage tRNA-Trp-CCA-1:TLE_Z tRNA-Trp-CCA-3:TLE_Z tRNA-Trp-CCA-2:TLE_Z tRNA-Trp-CCA-4:TLE_Z tRNA-Trp-CCA-6:TLE_Z Fragment Aminos Trp Fragment Alignment # STOCKHOLM 1.0 tRNA-Trp-CCA-1 -GACCUCGUGGCGCAAU--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCACCA [1] tRNA-Trp-CCA-2 -GACCUCGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGCUGCGUGUUCGAAUCACGUCGGGGUCACCA [2] tRNA-Trp-CCA-3 -GGCCUCGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCACCA [3] tRNA-Trp-CCA-4 -GACCUCGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCACCA [4] tRNA-Trp-CCA-6 -GACCUCGUGGCACAAU--GGU--AGCACGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCACCA [5] 3002b ..........................................................UCAAAUCACGUCGGGGUCACCA [1,3,4,5] 3002a ..............................................................AUCACGUCGGGGUCACCA [1,2,3,4,5] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 16: 3010b,3010a Fragment Coverage tRNA-Leu-TAA-2:TLE_Z Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-TAA-2 -ACCAGGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUAAGAUCCAAU-G-CGUGGGUUCGAACCCCACUCCUGGUACCA [1] 3010b ..........................................................UCGAACCCCACUCCUGGUACCA [1] 3010a ..............................................................ACCCCACUCCUGGUACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 17: 3041a,5008a,3041b Fragment Coverage tRNA-Gly-TCC-1:A_DSLE_TLE_Z Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-TCC-1 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCGGCCAACGCACCA [1] 5008a .GCGUUGGUGGUAUAGU--GGUG-AGC..................................................... [1] 3041b ..........................................................UCGAUUCCCGGCCAACGCACCA [1] 3041a ..............................................................UUCCCGGCCAACGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 18: 3035b,3035a Fragment Coverage tRNA-Arg-CCG-1:TLE_Z tRNA-Arg-CCG-2:TLE_Z tRNA-Arg-TCG-2:TLE_Z Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-CCG-1 -GGCCGCGUGGCCUAAU--GGAU-AAGGCGUCUGAUUCCGGAUCAGAAGAUUGAGGGUUCGAGUCCCUUCGUGGUCGCCA [1] tRNA-Arg-CCG-2 -GGCCGCGUGGCCUAAU--GGAU-AAGGCGUCUGAUUCCGGAUCAGAAGAUUGGGGGUUCGAGUCCCUUCGUGGUCGCCA [2] tRNA-Arg-TCG-2 -GACCGCGUGGCCUAAU--GGAU-AAGGCGUCUGACUUCGGAUCAGAAGAUUGAGGGUUCGAGUCCCUUCGUGGUCGCCA [3] 3035b ..........................................................UCGAGUCCCUUCGUGGUCGCCA [1,2,3] 3035a ..............................................................GUCCCUUCGUGGUCGCCA [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 19: 3038a,3038b Fragment Coverage tRNA-Ile-AAT-3:TLE_Z tRNA-Ile-AAT-1:TLE_Z Fragment Aminos Ile Fragment Alignment # STOCKHOLM 1.0 tRNA-Ile-AAT-1 -GGCCGGUUAGCUCAGUU-GGUU-AGAGCGUGGUGCUAAUAACGCCAAGGUCGCGGGUUCGAUCCCCGUACGGGCCACCA [1] tRNA-Ile-AAT-3 -GGCCGGUUAGCUCAGUU-GGUU-AGAGUGUGGUGCUAAUAACGCCAAGGUCGCGGGUUCGAUCCCCGUACGGGCCACCA [2] 3038b ..........................................................UCGAUCCCCGUACGGGCCACCA [1,2] 3038a ..............................................................UCCCCGUACGGGCCACCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 20: 3039b,3039a Fragment Coverage tRNA-Ala-AGC-4:TLE_Z Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-AGC-4 -GGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCACCA [1] 3039b ..........................................................UCGAUGCCCGCAUCCUCCACCA [1] 3039a ..............................................................UGCCCGCAUCCUCCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 21: 3006a,3006b,5015b,3007b,3007a,5015a Fragment Coverage tRNA-Gln-TTG-2:TLE_Z tRNA-Gln-TTG-3:TLE_Z tRNA-Gln-TTG-1:TLE_Z tRNA-Gln-TTG-5:TLE_Z tRNA-Gln-CTG-5:A_DSL tRNA-Gln-CTG-4:A_DSL_TLE_Z tRNA-Gln-CTG-1:A_DSLE_CSL_TLE_Z tRNA-Gln-CTG-3:A_DSLE_CSL_TLE_Z tRNA-Gln-CTG-2:A_DSLE_CSL_TLE_Z Fragment Aminos Gln Fragment Alignment # STOCKHOLM 1.0 tRNA-Gln-CTG-1 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-CCCGAGUUCAAAUCUCGGUGGGACCUCCA [1] tRNA-Gln-CTG-2 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGAACCUCCA [2] tRNA-Gln-CTG-3 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [3] tRNA-Gln-CTG-4 -GGUUCCAUGGUGUAAU--GGUG-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [4] tRNA-Gln-CTG-5 -GGUUCCAUGGUGUAAU--GGCU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGAUUUCCA [5] tRNA-Gln-TTG-1 -GGUCCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [6] tRNA-Gln-TTG-2 -GGUCCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCAA-UCUGAGUUCAAAUCUCGGUGGGACCUCCA [7] tRNA-Gln-TTG-3 -GGCCCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [8] tRNA-Gln-TTG-5 -GGACCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCAA-UCCAAGUUCAAAUCUCGGUGGGACCUCCA [9] 5015a .GGUUCCAUGGUGUAAU--GG........................................................... [1,2,3,4,5] 5015b .GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACU........................................... [1,2,3] 3006b ..........................................................UCAAAUCUCGGUGGAACCUCCA [2] 3007b ..........................................................UCAAAUCUCGGUGGGACCUCCA [1,3,4,6,7,8,9] 3007a ..............................................................AUCUCGGUGGGACCUCCA [1,3,4,6,7,8,9] 3006a ...............................................................UCUCGGUGGAACCUCCA [2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 22: 3034a,3034b Fragment Coverage tRNA-Arg-TCT-3:TLE_Z Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-TCT-3 -GGCUCUGUGGCGCAAU--GGAU-AGCGCAUUGGACUUCUAAUUCAAAGGUUGUGGGUUCGAGUCCCACCAGAGUCGCCA [1] 3034b ..........................................................UCGAGUCCCACCAGAGUCGCCA [1] 3034a ..............................................................GUCCCACCAGAGUCGCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 23: 5003a,3042a,3042b,5004a,5004b Fragment Coverage tRNA-Gly-CCC-4:TLE_Z tRNA-Gly-CCC-3:TLE_Z tRNA-Gly-CCC-2:A_DSLE_TLE_Z tRNA-Gly-GCC-3:A_DSLE_CSL_TLE_Z tRNA-Gly-GCC-2:A_DSLE_CSL_TLE_Z tRNA-Gly-GCC-5:A_DSLE tRNA-Gly-GCC-4:A_DSLE_CSL_TLE_Z Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-CCC-2 -GCAUUGGUAGUUCAAU--GGU--AGAAUUCUCGCCUCCCACGCGGGUGA-CCCGGGUUCGAUUCCCGGCCAAUGCACCA [1] tRNA-Gly-CCC-3 -GCAUUGGUGGUUCAAU--GGU--AGAAUUCUCGCCUCCCACGCGGGUGA-CCCGGGUUCGAUUCCCGGCCAAUGCACCA [2] tRNA-Gly-CCC-4 -GCAUUGGUGGUUCAAU--GGU--AGAAUUCUCGCCUCCCACUCGGGUGA-CCCGGGUUCGAUUCCCGGCCAAUGCACCA [3] tRNA-Gly-GCC-2 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCA [4] tRNA-Gly-GCC-3 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUUGAUUCCCGGCCAAUGCACCA [5] tRNA-Gly-GCC-4 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGGUUCCCGGCCAAUGCACCA [6] tRNA-Gly-GCC-5 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUUGCCUGCCACCCGGGAGG-CCCAGGUUCAAUUCCUGGCCAAUGUACCA [7] 5003a .GCAUUGGUAGUUCAAU--GGU--AGA..................................................... [1] 5004a .GCAUUGGUGGUUCAGU--GGU--AGA..................................................... [4,5,6,7] 5004b .GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCC............................................ [4,5,6] 3042b ..........................................................UCGAUUCCCGGCCAAUGCACCA [1,2,3,4] 3042a ..............................................................UUCCCGGCCAAUGCACCA [1,2,3,4,5,6] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 24: 3044b,5007a,3044a Fragment Coverage tRNA-Gly-CCC-1:A_DSLE_CS_TLE_Z Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-CCC-1 -GCGCCGCUGGUGUAGU--GGU--AUCAUGCAAGAUUCCCAUUCUUGCGA-CCCGGGUUCGAUUCCCGGGCGGCGCACCA [1] 5007a .GCGCCGCUGGUGUAGU--GGU--AUCAUGCA................................................ [1] 3044b ..........................................................UCGAUUCCCGGGCGGCGCACCA [1] 3044a ..............................................................UUCCCGGGCGGCGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 25: 3024b,3046a,3046b Fragment Coverage tRNA-Tyr-GTA-5:TE_Z tRNA-Tyr-GTA-4:TE_Z tRNA-Tyr-GTA-3:TLE_Z tRNA-Tyr-GTA-2:TLE_Z tRNA-Tyr-GTA-1:TLE_Z Fragment Aminos Tyr Fragment Alignment # STOCKHOLM 1.0 tRNA-Tyr-GTA-1 -CCUUCGAUAGCUCAGUU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAAUCCGGCUCGAAGGACCA [1] tRNA-Tyr-GTA-2 -CCUUCGAUAGCUCAGUU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGACCA [2] tRNA-Tyr-GTA-3 -CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGACCA [3] tRNA-Tyr-GTA-4 -CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGACUCCGGCUCGAAGGACCA [4] tRNA-Tyr-GTA-5 -CUUUCGAUAGUUCAGUU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAGUCCGGCUCGAAGGACCA [5] 3024b ..........................................................UCGAAUCCGGCUCGAAGGACCA [1] 3046b ..........................................................UCGAUUCCGGCUCGAAGGACCA [2,3] 3046a ...............................................................UCCGGCUCGAAGGACCA [1,2,3,4,5] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 26: 3005a,3005b Fragment Coverage tRNA-Thr-TGT-3:TLE_Z tRNA-Thr-TGT-2:TLE_Z Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-TGT-2 -GGCCCUAUAGCUCAGG--GGUU-AGAGCACUGGUCUUGUAAACCAGGGGUCGCGAGUUCAAAUCUCGCUGGGGCCUCCA [1] tRNA-Thr-TGT-3 -GGCUCCAUAGCUCAGG--GGUU-AGAGCACUGGUCUUGUAAACCAGGGGUCGCGAGUUCAAAUCUCGCUGGGGCCUCCA [2] 3005b ..........................................................UCAAAUCUCGCUGGGGCCUCCA [1,2] 3005a ..............................................................AUCUCGCUGGGGCCUCCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 27: 3014b,3014a Fragment Coverage tRNA-Leu-AAG-3:TLE_Z tRNA-Leu-TAG-2:TLE_Z Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-AAG-3 -GGUAGUGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCGAAUCCCACCACUGCCACCA [1] tRNA-Leu-TAG-2 -GGUAGUGUGGCCGAGC--GGUCUAAGGCGCUGGAUUUAGGCUCCAGU-G-CGUGGGUUCGAAUCCCACCACUGCCACCA [2] 3014b ..........................................................UCGAAUCCCACCACUGCCACCA [1,2] 3014a ..............................................................AUCCCACCACUGCCACCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 28: 5013a,5013b,3015a,3015b Fragment Coverage tRNA-Leu-AAG-2:TLE_Z tRNA-Leu-AAG-1:A_DSLE_TLE_Z tRNA-Leu-TAG-3:TLE_Z tRNA-Leu-TAG-1:A_DSLE_TLE_Z Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-AAG-1 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCGAAUCCCACCGCUGCCACCA [1] tRNA-Leu-AAG-2 -GGUAGUGUGGCCGAGC--GGUCUAAGGCGCUGGAUUAAGGCUCCAGU-G-CGUGGGUUCGAAUCCCACCGCUGCCACCA [2] tRNA-Leu-TAG-1 -GGUAGCGUGGCCGAGC--GGUCUAAGGCGCUGGAUUUAGGCUCCAGU-G-CGUGGGUUCGAAUCCCACCGCUGCCACCA [3] tRNA-Leu-TAG-3 -GGUAGCGUGGCCGAGU--GGUCUAAGGCGCUGGAUUUAGGCUCCAGU-G-CGUGGGUUCGAAUCCCACCGCUGCCACCA [4] 5013a .GGUAGCGUGGCCGAGC............................................................... [1,3] 5013b .GGUAGCGUGGCCGAGC--GGUCUAAGGC................................................... [1,3] 3015b ..........................................................UCGAAUCCCACCGCUGCCACCA [1,2,3,4] 3015a ..............................................................AUCCCACCGCUGCCACCA [1,2,3,4] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 29: 3019a,3019b Fragment Coverage tRNA-Thr-AGT-2:TLE_Z tRNA-Thr-AGT-4:TLE_Z Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-AGT-2 -GGCUCCGUGGCUUAGCU-GGUU-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGCGGGGCCUCCA [1] tRNA-Thr-AGT-4 -GGCUCCGUGGCUUAGCU-GGUU-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCAAAUCCCAGCGGGGCCUCCA [2] 3019b ..........................................................UCGAAUCCCAGCGGGGCCUCCA [1] 3019a ..............................................................AUCCCAGCGGGGCCUCCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 30: 3020a,3020b Fragment Coverage tRNA-Thr-AGT-3:TLE_Z tRNA-Thr-AGT-1:TLE_Z Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-AGT-1 -GGCGCCGUGGCUUAGUU-GGUU-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGCGGUGCCUCCA [1] tRNA-Thr-AGT-3 -GGCGCCGUGGCUUAGCU-GGUU-AAAGCGCCUGUCUAGUAAACAGGAGAUCCUGGGUUCGAAUCCCAGCGGUGCCUCCA [2] 3020b ..........................................................UCGAAUCCCAGCGGUGCCUCCA [1,2] 3020a ..............................................................AUCCCAGCGGUGCCUCCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 31: 3032b,3032a,5014a,5014b Fragment Coverage tRNA-Val-TAC-1:A_DSLE_TLE_Z Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-TAC-1 -GGUUCCAUAGUGUAGC--GGUU-AUCACGUCUGCUUUACACGCAGAAGGUCCUGGGUUCGAGCCCCAGUGGAACCACCA [1] 5014a .GGUUCCAUAGUGUAGC--GG........................................................... [1] 5014b .GGUUCCAUAGUGUAGC--GGUU-AUC..................................................... [1] 3032b ..........................................................UCGAGCCCCAGUGGAACCACCA [1] 3032a .............................................................AGCCCCAGUGGAACCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 32: 3031b,3031a,5006b,5006c,5006a Fragment Coverage tRNA-Lys-CTT-14:TLE_Z tRNA-Lys-CTT-3:A_DSLE_TLE_Z tRNA-Lys-CTT-2:A_DSLE_CSL_TLE_Z Fragment Aminos Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Lys-CTT-2 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGGGACUCUUAAUCCCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGCCA [1] tRNA-Lys-CTT-3 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGCCA [2] tRNA-Lys-CTT-14 -CCCCGGCUAGCUCAGUC-AGU--AGAGCUUGAGAAUCUUAAUCUCAGGGUCGUGGGUUGGAGCCCCACGUUGGGCGCCA [3] 5006a .GCCCGGCUAGCUCAGUC-GG........................................................... [1,2] 5006b .GCCCGGCUAGCUCAGUC-GGU--AGAGC................................................... [1,2] 5006c .GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGGGAC............................................ [1] 3031b ..........................................................UCGAGCCCCACGUUGGGCGCCA [1,2] 3031a .............................................................AGCCCCACGUUGGGCGCCA [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 33: 5001b,5001a,3047b,3047a,3008b,3008a Fragment Coverage tRNA-iMet-CAT-1:A_DSLE_CS_TSLE_Z tRNA-iMet-CAT-2:A_DSL_TSLE_Z tRNA-iMet-CAT-3:A_DSLE_CS_TLE_Z Fragment Aminos iMet Fragment Alignment # STOCKHOLM 1.0 tRNA-iMet-CAT-1 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUACCA [1] tRNA-iMet-CAT-2 -AGCAGAGUGGCGCAGC--GGA--AGCAUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUACCA [2] tRNA-iMet-CAT-3 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUCGAUAGAUCGAAACCAUCCUCUGCUACCA [3] 5001a .AGCAGAGUGGCGCAGC--GGA.......................................................... [1,2,3] 5001b .AGCAGAGUGGCGCAGC--GGA--AGCGUGCU................................................ [1,3] 3047b ......................................................UGGAUCGAAACCAUCCUCUGCUACCA [1,2] 3047a ..........................................................UCGAAACCAUCCUCUGCUACCA [1,2,3] 3008b ..........................................................UCGAAACCAUCCUCUGCUACCA [1,2,3] 3008a ..........................................................UCGAAACCAUCCUCUGCUACCA [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 34: 3040b,3052a,5024b,5023b,5023a Fragment Coverage tRNA-Asp-GTC-4:A_DSLE tRNA-Asp-GTC-1:A_DSLE_TLE_Z tRNA-Asp-GTC-2:A_DSLE_TLE_Z tRNA-Asp-GTC-3:A_DSLE Fragment Aminos Asp Fragment Alignment # STOCKHOLM 1.0 tRNA-Asp-GTC-1 -UCCUCGUUAGUAUAGU--GGUG-AGUAUCCCCGCCUGUCACGCGGGAGA-CCGGGGUUCGAUUCCCCGACGGGGAGCCA [1] tRNA-Asp-GTC-2 -UCCUCGUUAGUAUAGU--GGUU-AGUAUCCCCGCCUGUCACGCGGGAGA-CCGGGGUUCAAUUCCCCGACGGGGAGCCA [2] tRNA-Asp-GTC-3 -UCCUCGUUAGUAUAGU--GGUG-AGUAUCCCUGCCUGUCACGCAGGACA-CCAGGGUUCGAUUUCCUGACGGGGAGCCA [3] tRNA-Asp-GTC-4 -UCCUCGUUAGUAUAGU--GGUG-AGUAUCCCCGCCUGUCACACAGGAGA-CCGGGGUUCGAUUCCCCGAUGGGGAGCCA [4] 5023a .UCCUCGUUAGUAUAGU--GG........................................................... [1,2,3,4] 5024b .UCCUCGUUAGUAUAGU--GGUU-AGU..................................................... [2] 5023b .UCCUCGUUAGUAUAGU--GGUG-AGU..................................................... [1,3,4] 3040b ..........................................................UCGAUUCCCCGACGGGGAGCCA [1] 3052a .............................................................AUUCCCCGACGGGGAGCCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 35: 5005b,5005a Fragment Coverage tRNA-Lys-TTT-1:A_DSLE_CS Fragment Aminos Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Lys-TTT-1 -GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA [1] 5005a .GCCCGGAUAGCUCAGUC-GGU--AGAGCA.................................................. [1] 5005b .GCCCGGAUAGCUCAGUC-GGU--AGAGCAUCAGA............................................. [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 36: 5002b,5002a,3043b,3043a Fragment Coverage tRNA-Gly-GCC-1:A_DSLE_CSL_TLE_Z Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-GCC-1 -GCAUGGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCCAUGCACCA [1] 5002a .GCAUGGGUGGUUCAGU--GGU--AGA..................................................... [1] 5002b .GCAUGGGUGGUUCAGU--GGU--AGAAUUCUCGCC............................................ [1] 3043b ..........................................................UCGAUUCCCGGCCCAUGCACCA [1] 3043a ..............................................................UUCCCGGCCCAUGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 37: 5022a,5022b,3045a,3045b Fragment Coverage tRNA-Glu-CTC-2:A_DSLE_TLE_Z tRNA-Glu-CTC-1:A_DSLE_TLE_Z tRNA-Glu-TTC-3:A_DSL_TLE_Z tRNA-Glu-CTC-5:A_DSLE Fragment Aminos Glu Fragment Alignment # STOCKHOLM 1.0 tRNA-Glu-CTC-1 -UCCCUGGUGGUCUAGU--GGUU-AGGAUUCGGCGCUCUCACCGCCGCGG-CCCGGGUUCGAUUCCCGGUCAGGGAACCA [1] tRNA-Glu-CTC-2 -UCCCUGGUGGUCUAGU--GGUU-AGGAUUUGGCGCUCUCACCGCCGCGG-CCUGGGUUCGAUUCCCGGUCAGGGAACCA [2] tRNA-Glu-CTC-5 -UCCCUGGUGGUCUAGU--GGUU-AGGCUUUGGUGCUCUCACCUCCAUGG-CCCAGGUUUGAUUCCUGGUCAGGGAACCA [3] tRNA-Glu-TTC-3 -UCCCUGGUGGUCUAGU--GGCU-AGGAUUCGGCGCUUUCACCGCCGCGG-CCCGGGUUCGAUUCCCGGUCAGGGAACCA [4] 5022a .UCCCUGGUGGUCUAGU--GG........................................................... [1,2,3,4] 5022b .UCCCUGGUGGUCUAGU--GGUU-AGG..................................................... [1,2,3] 3045b ..........................................................UCGAUUCCCGGUCAGGGAACCA [1,2,4] 3045a ..............................................................UUCCCGGUCAGGGAACCA [1,2,4] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 38: 3022b,3022a Fragment Coverage tRNA-Arg-TCG-3:TLE_Z Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-TCG-3 -GACCACGUGGCCUAAU--GGAU-AAGGCGUCUGACUUCGGAUCAGAAGAUUGAGGGUUCGAAUCCCUUCGUGGUUGCCA [1] 3022b ..........................................................UCGAAUCCCUUCGUGGUUGCCA [1] 3022a ..............................................................AUCCCUUCGUGGUUGCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 39: 5020b,3029b,3029a,5020a Fragment Coverage tRNA-Glu-TTC-1:A_DSLE_TLE_Z Fragment Aminos Glu Fragment Alignment # STOCKHOLM 1.0 tRNA-Glu-TTC-1 -UCCCACAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUCCCGGUGUGGGAACCA [1] 5020a .UCCCACAUGGUCUAGC--GG........................................................... [1] 5020b .UCCCACAUGGUCUAGC--GGUU-AGG..................................................... [1] 3029b ..........................................................UCGACUCCCGGUGUGGGAACCA [1] 3029a ..............................................................CUCCCGGUGUGGGAACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 40: 3048a,3033a,3033b Fragment Coverage tRNA-Ile-TAT-1:TE_Z tRNA-Ile-TAT-2:TLE_Z Fragment Aminos Ile Fragment Alignment # STOCKHOLM 1.0 tRNA-Ile-TAT-1 -GCUCCAGUGGCGCAAUC-GGUU-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAUCCUCACCUGGAGCACCA [1] tRNA-Ile-TAT-2 -GCUCCAGUGGCGCAAUC-GGUU-AGCGCGCGGUACUUAUAAUGCCGAGGUUGUGAGUUCGAGCCUCACCUGGAGCACCA [2] 3033b ..........................................................UCGAGCCUCACCUGGAGCACCA [2] 3048a .............................................................AGCCUCACCUGGAGCACCA [2] 3033a ................................................................CUCACCUGGAGCACCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 41: 5019b,5019a,3009a,3009b Fragment Coverage tRNA-Val-AAC-1:A_DSLE tRNA-Val-CAC-2:A_DSLE tRNA-Val-CAC-1:A_DSLE Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-AAC-1 -GUUUCCGUAGUGUAGU--GGUU-AUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACACCA [1] tRNA-Val-CAC-1 -GUUUCCGUAGUGUAGU--GGUU-AUCACGCUCGCCUCACACGCGAGAGGUCCCCGGUUCGAAACCGGGCGGAAACACCA [2] tRNA-Val-CAC-2 -GUUUCCGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCGGAAACACCA [3] 5019a .GUUUCCGUAGUGUAGU--GG........................................................... [1,2,3] 5019b .GUUUCCGUAGUGUAGU--GGUU-AUCACG.................................................. [1,2,3] 3009b ..........................................................UCGAAACCGGGCGGAAACACCA [1,2,3] 3009a ...............................................................ACCGGGCGGAAACACCA [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 42: 3012b Fragment Coverage tRNA-Met-CAT-3:TLE_Z Fragment Aminos Met Fragment Alignment # STOCKHOLM 1.0 tRNA-Met-CAT-3 -GCCUUCUUAGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAAUCUGAAGGUCCUGAGUUCGAACCUCAGAGAGGGCACCA [1] 3012b ..........................................................UCGAACCUCAGAGAGGGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 43: 3013b Fragment Coverage tRNA-Met-CAT-2:TLE_Z Fragment Aminos Met Fragment Alignment # STOCKHOLM 1.0 tRNA-Met-CAT-2 -GCCUCCUUAGCGCAGUA-GGC--AGCGCGUCAGUCUCAUAAUCUGAAGGUCCUGAGUUCGAACCUCAGAGGGGGCACCA [1] 3013b ..........................................................UCGAACCUCAGAGGGGGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 44: 3023b Fragment Coverage tRNA-His-GTG-2:TLE_Z tRNA-His-GTG-3:TLE_Z Fragment Aminos His Fragment Alignment # STOCKHOLM 1.0 tRNA-His-GTG-2 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCUCGGUUCGAAUCCGAGUCACGGCACCA [1] tRNA-His-GTG-3 GGCCGUGAUCGUAUAGG--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCUCGGUUCGAAUCCGAGUCACGGCACCA [2] 3023b ..........................................................UCGAAUCCGAGUCACGGCACCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 45: 3051a Fragment Coverage tRNA-Ser-GGA-1:TE_Z tRNA-Phe-GAA-1:TE_Z tRNA-Phe-GAA-3:TE_Z Fragment Aminos Ser,Phe Fragment Alignment # STOCKHOLM 1.0 tRNA-Phe-GAA-1 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCACCA [1] tRNA-Phe-GAA-3 -GCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUCGGCACCA [2] tRNA-Ser-GGA-1 -GCUGAAAUAGCUCAGUU-GGG--AGAGCAUUAGACUGGAGAUCUAAAGGUCCCUGGUUUGAUCCCGGGUUUCGGCACCA [3] 3051a ...............................................................CCCGGGUUUCGGCACCA [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ //