Fragment Cluster 1: 1001 Fragment Coverage tRNA-Ser-TGA-1-1: Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-TGA-1-1 GUGCACUGGCUGAUACCCUAAAGUGUCUCCGCCUUCGUCCUUUCUCCGUAGCAGCGAUGGCCGAGU--GGUU-AAGGCGUUGGACUUGAAAUCCAAU-G-CGCAGGUUCGAACCCUGCUCGCUGCGGAAGCGGGUGCUUCACUUUUUUUUUUUUUUUUUUUUUUCAUACAACAUUA [1] 1001 ..............................................................................................................................GAAGCGGGUGCUUCACUUUU.............................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 2: 1002 Fragment Coverage tRNA-Asn-GTT-3-8: Fragment Aminos Asn Fragment Alignment # STOCKHOLM 1.0 tRNA-Asn-GTT-3-8 UUUGUCUGUCAAACCUUGUAGGGUUAUACUAUAAGCAGCUGACUAAUGUCGUCUCUGUGGCGCAAUC-GGUU-AGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACGACCACAGCGACUUUUUCAUUCCCUAAUACUGAAUAAAGUGGAAGUUCUUU [1] 1002 ..............................................................................................................................ACCACAGCGACUUUU................................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 3: 1003 Fragment Coverage tRNA-Ser-GCT-4-1: Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-GCT-4-1 GGAGUGAGAGUUGAGGUCUCAGAGAAGCCAAACUGCACUCGAGUCGUGUGGACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGUCUGUAGCUUAUAAGGUCUACAUUCAGUUUUGUACCUUAGAAACAAGGCU [1] 1003 ..............................................................................................................................UCUGUAGCUUAUAAGGUCUACAUUCAGUUUU................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 4: 1004 Fragment Coverage tRNA-Arg-CCG-3-1: Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-CCG-3-1 CGAUGAUCGAAUCACGUAAGGAGAAGGAGUGAGAACCCAGACUUUGUAGUGACCCAGUGGCCUAAU--GGAU-AAGGCAUCAGCCUCCGGAGCUGGGGAUUGUGGGUUCGAGUCCCAUCUGGGUCGCAUGGUCGUUCAUUUUUAUUGAAUCGAAAGGAGAUCGACAAAAGUUCUUU [1] 1004 ..............................................................................................................................CAUGGUCGUUCAUUUU.................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 5: 1005 Fragment Coverage tRNA-Ala-TGC-3-1: Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-TGC-3-1 GCACACUAUGCAAUCACUAGGGCAUUUCUGAGCGUACUGUAACAGUGAGUGGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGCCCCGGGUUCGAUCCCCGGCAUCUCCAAACGGCUACCGCCUACCUUUUAGCAUAGUCUUUUUUUUUUGACAUUCUAA [1] 1005 ..............................................................................................................................AACGGCUACCGCCUACCUUUU............................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 6: 1006 Fragment Coverage tRNA-Arg-ACG-1-3: Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-ACG-1-3 CCCGCAGAAAAACCUGAAGUAUCGUUAUUGGGCCGCACUGCAAUGUCUGCGGGCCAGUGGCGCAAU--GGAU-AACGCGUCUGACUACGGAUCAGAAGAUUCCAGGUUCGACUCCUGGCUGGCUCGUUGGGACUGGUACUCCUUUAUUUGCAUCAUUGGCUAAUCUAGUCAUCUCC [1] 1006 ..............................................................................................................................UUGGGACUGGUACUCCUUUAUU............................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 7: 1007 Fragment Coverage tRNA-Thr-CGT-2-1: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-CGT-2-1 CCGCACCACCUCCCCUCCACUGAGAGCUUCCACCAGCCGCUCGGCUGUCAGGCGCGGUGGCCAAGU--GGU--AAGGCGUCGGUCUCGUAAACCGAAGAUCGCGGGUUCGAACCCCGUCCGUGCCUGCGUUUGGAAGAGAUAUUUUCUUGUUUUCAGCUCCCUUUUGUUUGUUUGU [1] 1007 ..............................................................................................................................GCGUUUGGAAGAGAUAUUUU.............................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 8: 1008 Fragment Coverage tRNA-Cys-GCA-3-2: Fragment Aminos Cys Fragment Alignment # STOCKHOLM 1.0 tRNA-Cys-GCA-3-2 AAAAGCAAACAAGUCAUGUAAAAAGAAAUUUGCAGCCUCUUACCGCCAGAGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCUUGGUGGGUGCAUAUGUUUUUCCUAUGAGAACACUCAGUUUCUCCACUCAG [1] 1008 ..............................................................................................................................UGGUGGGUGCAUAUGUUUU............................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 9: 1009 Fragment Coverage tRNA-Cys-GCA-3-3: Fragment Aminos Cys Fragment Alignment # STOCKHOLM 1.0 tRNA-Cys-GCA-3-3 CCUGCGCUAGACUAGCACCAAGUAGUAACUGACGCAAAGCUACCGGCAGAGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCUAGCAGGCUCACUCUUUUCUUUGGAAGACCUUAUUACGUCCCGCAUAUUUU [1] 1009 ..............................................................................................................................AGCAGGCUCACUCUUUU................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 10: 1010 Fragment Coverage tRNA-Phe-GAA-1-3: Fragment Aminos Phe Fragment Alignment # STOCKHOLM 1.0 tRNA-Phe-GAA-1-3 ACCUACGUGAGAAAGUCUUUAGAACUCAGCGUGAGAGCAUGCUGGGCGUGGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAACCGCGUGCAUUCCUUUUUUUUCCUUGCUGGUUUUUUAUUGGUUUUGUUU [1] 1010 ..............................................................................................................................ACCGCGUGCAUUCCUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 11: 1011 Fragment Coverage tRNA-Asp-GTC-1-11: Fragment Aminos Asp Fragment Alignment # STOCKHOLM 1.0 tRNA-Asp-GTC-1-11 ACAUCCCUUCGUUUGAACUUCCCUUAACAUUAUUGUAUACGUUCUCGUUCUCCUCGUUAGUAUAGU--GGUG-AGUAUCCCCGCCUGUCACGCGGGAGA-CCGGGGUUCGAUUCCCCGACGGGGAGUCUGGACACAUGUGGCUUUUUGUUUCUAUUUUGGGACACAAAAGGUCAGG [1] 1011 ..............................................................................................................................UCUGGACACAUGUGGCUUUU.............................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 12: 1012 Fragment Coverage tRNA-Thr-TGT-2-1: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-TGT-2-1 AACCAGCAACCGAAUCCUUUUCUAAGAAAGAGAGAAACUGUGAUCUGUGUGGCCCUAUAGCUCAGG--GGUU-AGAGCACUGGUCUUGUAAACCAGGGGUCGCGAGUUCAAAUCUCGCUGGGGCCUGAGUCUACCUAGACUUUUGAGCACAGGAUUUUCUGGCAGUCUGUCGCUAA [1] 1012 ..............................................................................................................................GAGUCUACCUAGACUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 13: 1013 Fragment Coverage tRNA-Pro-CGG-1-3: Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-CGG-1-3 UGGGAAUGAAUACAAGCAUUUAAGGAAAUGUAGGGAAGUAGCAGUUGUGUGGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCUGAAUGGGGUCCAGUUUCCCAGUGUUUUUAUUUCCGUUAUUUUUAGAAUU [1] 1013 ..............................................................................................................................UGAAUGGGGUCCAGUUUCCCAGUGUUUU...................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 14: 1014 Fragment Coverage tRNA-Arg-CCG-2-1: Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-CCG-2-1 AGGCGCUUGAAUAAGUCUUAUGGAGAGAGCUAAGGCCUGAGUCAGUGUAGGGCCGCGUGGCCUAAU--GGAU-AAGGCGUCUGAUUCCGGAUCAGAAGAUUGGGGGUUCGAGUCCCUUCGUGGUCGCUGCGUGCAUUUGCUUUUUAAAAACCUACCUUAAAAUUUCCCAUUCUCAA [1] 1014 ..............................................................................................................................CUGCGUGCAUUUGCUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 15: 1015 Fragment Coverage tRNA-Cys-GCA-3-4: Fragment Aminos Cys Fragment Alignment # STOCKHOLM 1.0 tRNA-Cys-GCA-3-4 AGAAAUCUAUUACAAUGAAAUGCAUUCUGGUGAAGCAAGUUCAGUACACUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCUCACGGCUACUUACCGUGUGUCCCUUUUGCUAGCUCAUCUAGCUUGAGUCU [1] 1015 ..............................................................................................................................CACGGCUACUUACCGUGUGUCCCUUUU....................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 16: 1016 Fragment Coverage tRNA-Val-TAC-1-1: Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-TAC-1-1 ACCACAGUUCUACAUGUAGUUAGUUGAUAUGGCAUGCGACUCCUCCGCCCGGUUCCAUAGUGUAGC--GGUU-AUCACGUCUGCUUUACACGCAGAAGGUCCUGGGUUCGAGCCCCAGUGGAACCACGUGGUGUGCUAGUUAAUUUUUUUCAGGUAGUUAUUGCUGUAGCCUGUCU [1] 1016 ..............................................................................................................................CGUGGUGUGCUAGUUAAUUUU............................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 17: 1017 Fragment Coverage tRNA-His-GTG-2-3: Fragment Aminos His Fragment Alignment # STOCKHOLM 1.0 tRNA-His-GTG-2-3 UCUCAAGAGUCGCACUGGUUACACAGCACAGUGUGGCGUUCCGGUAGCUCGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCUCGGUUCGAAUCCGAGUCACGGCAUUGUGGCAACAAUGGUACGGCAAGGGCGCCUUUUUAGUGAAGGCGUUGUA [1] 1017 ..............................................................................................................................UUGUGGCAACAAUGGUACGGCAAGGGCGCCUUUU................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 18: 1018 Fragment Coverage tRNA-Ala-CGC-2-1: Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-CGC-2-1 CGUUGGGUUCUUUGUAUAAGUAGGCAUAUGAAGAGAGCAGUUAGCGGCUGGGGGAUGUAGCUCAGU--GGU--AGAGCGCGCGCUUCGCAUGUGUGAGGUCCCGGGUUCAAUCCCCGGCAUCUCCAAGCAGCCGGAAUUCUGUUUUUCAUUCUUUCUCAAAGAAAAGAUUUUCACU [1] 1018 ..............................................................................................................................AGCAGCCGGAAUUCUGUUUU.............................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 19: 1019 Fragment Coverage tRNA-Tyr-GTA-3-1: Fragment Aminos Tyr Fragment Alignment # STOCKHOLM 1.0 tRNA-Tyr-GTA-3-1 GAGCAGUGACGUGGCGUUAUGGAGCCCUUCCGUCAACCGGCUUGCCGCUCCCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGgcuuguggcuguggacAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGAAAGAGCUUGCUAUUUUCUUUUACCUUUUAAUCCUAUCUAUGAGGCAUGUU [1] 1019 ..............................................................................................................................................AAGAGCUUGCUAUUUU.................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<______................_>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***+................+=====+++++=====+++++++============+.................................................. // Fragment Cluster 20: 1020 Fragment Coverage tRNA-iMet-CAT-1-1: Fragment Aminos iMet Fragment Alignment # STOCKHOLM 1.0 tRNA-iMet-CAT-1-1 GGUGAAUGGUAAGCUCUUCUAUGGAAAAGAAGAGAAUGCUACCAGUGGGUAGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUAUCGGAGGCUUUGUUUUUAAAAUUUUGACAAUCUAAUUAAAUUUUCCUUUC [1] 1020 ..............................................................................................................................UCGGAGGCUUUGUUUU.................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 21: 1021 Fragment Coverage tRNA-Asn-GTT-3-5: tRNA-Asn-GTT-3-4: Fragment Aminos Asn Fragment Alignment # STOCKHOLM 1.0 tRNA-Asn-GTT-3-4 CCGCGGUGACGCCUGCCUGAACAAGGAACCGGCGUGGCAGGCUCACCACCGUCUCUGUGGCGCAAUC-GGUU-AGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACGACAGACAGUUAGGCCUCACCUAGGCUUUUAACAGCCUGCUUUGCUUAUUA [1] tRNA-Asn-GTT-3-5 CCGCGGUGACGCCUGCCUGAACAAGGAACCGGCGUGGCAGGCUCACCACCGUCUCUGUGGCGCAAUC-GGUU-AGCGCGUUCGGCUGUUAACCGAAAGGUUGGUGGUUCGAGCCCACCCAGGGACGACAGACAGUUAGGCCUCACCUAGGCUUUUAACAGCCUGCUUUGCUUAUUA [2] 1021 ..............................................................................................................................ACAGACAGUUAGGCCUCACCUAGGCUUUU..................... [1,2] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 22: 1022 Fragment Coverage tRNA-His-GTG-1-1: Fragment Aminos His Fragment Alignment # STOCKHOLM 1.0 tRNA-His-GTG-1-1 UUUAGUGGUGAGUAUUCUGGUCGCUGACCCUGUCGCUGGGCGUGUGGCUUGCCGAGAUCGUAUAGU--GGUU-AGUACUCUGCAUUGUGGCUGCAGCAA-CCUCGGUUCGAAUCCGAGUCUCGGCACUAUCGUCCUUCUGCCCAGCGAUCUUUUGUUUCUGCAUCUAGACGGAAUA [1] 1022 ..............................................................................................................................CUAUCGUCCUUCUGCCCAGCGAUCUU........................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 23: 1023 Fragment Coverage tRNA-Ser-AGA-2-1: Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-AGA-2-1 UUCCAAUGCAGAGUCUACAUAGAAUCUUCCUGCCAAAAUUAGCAUCACCAGUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGGAAGGGAAUGUUUUUUGCCACCGAAUGAAUAAUUUUGGAUCUGCAGAUUC [1] 1023 ..............................................................................................................................GAAGGGAAUGUUUU.................................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 24: 1024 Fragment Coverage tRNA-Asp-GTC-1-7: Fragment Aminos Asp Fragment Alignment # STOCKHOLM 1.0 tRNA-Asp-GTC-1-7 AUCUGUGUCUUUCUAUAGCAGCUUGUCAAGAAACAGUUUAGCACAGCUUGUCCUCGUUAGUAUAGU--GGUG-AGUAUCCCCGCCUGUCACGCGGGAGA-CCGGGGUUCGAUUCCCCGACGGGGAGGCUAACAGUGGUUUUUGCGUUAGCACUUUUAGGAAAUGAUGGAUGUGUGU [1] 1024 ..............................................................................................................................GCUAACAGUGGUUUU................................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 25: 1025 Fragment Coverage tRNA-Ile-AAT-1-4: Fragment Aminos Ile Fragment Alignment # STOCKHOLM 1.0 tRNA-Ile-AAT-1-4 CCUGUCUGAGAUCUUUUAUAAGAAGUAAGGAAAGCCAACGCUGGCGACCUGGCCGGUUAGCUCAGUU-GGUU-AGAGCGUGGUGCUAAUAACGCCAAGGUCGCGGGUUCGAUCCCCGUACGGGCCAGUAAACUGCUUAGAUUUUACAACUGGAAAUGUAGGACUCUGUCCUCUACA [1] 1025 ..............................................................................................................................GUAAACUGCUUAGAUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 26: 1026 Fragment Coverage tRNA-Cys-GCA-3-1: Fragment Aminos Cys Fragment Alignment # STOCKHOLM 1.0 tRNA-Cys-GCA-3-1 UAACAGCAAAGAGAAGGUAAAUUGGUUCAGAGAGGCUCUUUCUGCCAGCAGGGGGUAUAGCUCAGU--GGU--AGAGCAUUUGACUGCAGAUCAAGAGGUCCCCGGUUCAAAUCCGGGUGCCCCCUUACAGGCCCAUAGUCGAGGGGCACUCUUUUGAGUGUGUGGUAAGUACCAU [1] 1026 ..............................................................................................................................UACAGGCCCAUAGUCGAGGGGCACUCUUUU.................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 27: 1027 Fragment Coverage tRNA-Arg-ACG-3-1: Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-ACG-3-1 AAGCUGUGUAAUUGGAGAUCACUUAUCGUGGAGGAGGCCUCCUCAGCACCGGGCCAGUGGCGCAAU--GGAU-AACGCGUCUGACUACGGAUCAGAAGAUUCUAGGUUCGACUCCUGGCUGGCUCGACGUGUGCGAUCUUUUUCCUGAACCUUGGAAGGCCUGCUUGAAAAGGAUC [1] 1027 ..............................................................................................................................ACGUGUGCGAUCUU.................................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 28: 1028 Fragment Coverage tRNA-Val-TAC-1-3: Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-TAC-1-3 GUCUGUUGCGCACUCUCAAAAGGCCGAAUAGUCAUACCACCCUUCGUGGUGGUUCCAUAGUGUAGC--GGUU-AUCACGUCUGCUUUACACGCAGAAGGUCCUGGGUUCGAGCCCCAGUGGAACCAUAGCUGCAAAGCCAGCUGACAUUUUUUCCCCAAAAGUAUCUUAGAUAAAA [1] 1028 ..............................................................................................................................UAGCUGCAAAGCCAGCUGACAUUUU......................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 29: 1034 Fragment Coverage tRNA-Arg-TCG-1-1: Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-TCG-1-1 CUGAAGGCGGCUACACGCUUUAAGCUAAGUAAAGGCACCUUCUCGCUGGCGGCCGCGUGGCCUAAU--GGAU-AAGGCGUCUGACUUCGGAUCAGAAGAUUGCAGGUUCGAGUCCUGCCGCGGUCGACUUGUAUGUUGUUUUUAUCUGUCAGUUUGUUAAUCCCAAGAUUCCCUUU [1] 1034 ..............................................................................................................................ACUUGUAUGUUGUUUU.................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 30: 1035 Fragment Coverage tRNA-Thr-CGT-1-1: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-CGT-1-1 CAUGGGAGUGGCGCCAGCAUAGAAGCUCGCGCGGCCGCCACCUCAACGCAGGCGCGGUGGCCAAGU--GGU--AAGGCGUCGGUCUCGUAAACCGAAGAUCACGGGUUCGAACCCCGUCCGUGCCUGCCCUCUUUCCGUGUGGAUUUAAGAAUUUUUUAGGUGAGACCCUUUUCAA [1] 1035 ..............................................................................................................................GCCCUCUUUCCGUGUGGAUUUAAGAAUUUU.................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. //