tDRnamer 1.0.0 (Dec 2021)
User: pchan
Run time: Sun Jan 30 02:44:19 2022
Command: tDRnamer --mode seq --seq ../../fasta/rsphaeroides_trf.fa --db /soe/pchan/software/tDRnamer/tDRnamer_web/tdbs/rhodSpha_ATCC17025/rhodSpha_ATCC17025 --source euk --output trfdb_rhodSpha_ATCC17025 --minread 10 --minlen 13 --maxlen 60 --cores 4 --force

Status: Checking input options
Status: Checking sequences in ../../fasta/rsphaeroides_trf.fa
Total number of sequences: 86
Missing sequence name: 0
Sequence name with special characters: 0
Below minimum sequence length (13 bp): 0
Above maximum sequence length (60 bp): 0
Invalid sequence: 0
Total number of sequences after filtering: 86

Status: Reformat sequences in trfdb_rhodSpha_ATCC17025-filtered-seq.fa
Status: Search sequences against reference database
Status: Align sequences with bowtie2
86 reads; of these:
  86 (100.00%) were unpaired; of these:
    6 (6.98%) aligned 0 times
    0 (0.00%) aligned exactly 1 time
    80 (93.02%) aligned >1 times
93.02% overall alignment rate

Status: Filtering and identifying tDRs
Status: 80 sequences are identified as tDRs.
Status: Grouping tDRs
Status: Naming tDRs and summarizing results
Status: Process completed.