Fragment Cluster 1: 5005,5004 Fragment Coverage tRNA-Tyr-GTA-2:A_DSLE tRNA-Tyr-GTA-1:A_DSLE_CS Fragment Aminos Tyr Fragment Alignment # STOCKHOLM 1.0 tRNA-Tyr-GTA-1 -CUCCUGAUGGUGUAGUU-GGUU-AUCACACCCGGCUGUAAACCGGUUGGUCGCUAGUUCGAUUCUGGCUCAGGAGACCA [1] tRNA-Tyr-GTA-2 -CUCCUGAUGGUGUAGUU-GGUU-AUCACAUCCGGCUGUAAACCGGUUGGUCGCUAGUUCGAUUCUGGCUCAGGAGACCA [2] 5004 .CUCCUGAUGGUGUAGUU-GGUU-AU...................................................... [1,2] 5005 .CUCCUGAUGGUGUAGUU-GGUU-AUCACACCC............................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 2: 5027,5026 Fragment Coverage tRNA-Pro-CGG-1:A_DSLE_CS Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-CGG-1 -GGCCUAAUAGUGUAGU--GGUU-AACAUACCUCUUUCGGGUAGAGGUGAUCCCUGGUUCGAAUCCUGGUUAGGCCCCCA [1] 5026 .GGCCUAAUAGUGUAGU--GGUU-AA...................................................... [1] 5027 .GGCCUAAUAGUGUAGU--GGUU-AACAUACCU............................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 3: 3042,3037,5007,5008 Fragment Coverage tRNA-Ser-AGA-1:A_DSLE_V_TSLE_Z Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-AGA-1 -GACACUAUGCCUGAGU--GGUU-AAAGGGACAGACUAGAAAUCUGUU-GCGG---UCU-----CCGCG-CGCAGGUUCAAAUCCUGCUGGUGUCGCCA [1] 5007 .GACACUAUGCCUGAG................................................................................... [1] 5008 .GACACUAUGCCUGAGU--GGUU-AA......................................................................... [1] 3042 ............................................................................UUCAAAUCCUGCUGGUGUCGCCA [1] 3037 .................................................................CGCG-CGCAGGUUCAAAUCCUGCUGGUGUC.... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,<<<<<<<_____>>>>>>>,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====++=======+++++=======+++=====+++++++============++++ // Fragment Cluster 4: 3041,3025,3009,3043 Fragment Coverage tRNA-His-GTG-1:CE_V_TSLE_Z Fragment Aminos His Fragment Alignment # STOCKHOLM 1.0 tRNA-His-GTG-1 GGCUCACAUGGUCCAGU--GGUU-AAGACUCAUCGUUGUGGCCGAUGCG-------------------A-CCCAGGUUCGAUUCCUGGUGUGGGCACCA [1] 3041 .............................................UGCG-------------------A-CCCAGGUUCGAUUCCUGGUGUGGGC.... [1] 3025 ..........................................................................GGUUCGAUUCCUGGUGUGGGCA... [1] 3043 ............................................................................UUCGAUUCCUGGUGUGGGCACCA [1] 3009 ...............................................................................GAUUCCUGGUGUGGGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,<<<<<<<_____>>>>>>>,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====++=======+++++=======+++=====+++++++============++++ // Fragment Cluster 5: 5014,3017 Fragment Coverage tRNA-Thr-TGT-2:A_DSLE_CS_TSLE_Z Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-TGT-2 -GCCUCUAUGGCUUAGU--GGU--ACAGCAUCGCACUUGUAAUGCGAAGAUCCUUGGUUCGAUUCCGAGUGGAGGCACCA [1] 5014 .GCCUCUAUGGCUUAGU--GGU--ACAGCAUCGC.............................................. [1] 3017 ......................................................UGGUUCGAUUCCGAGUGGAGGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 6: 5017,3011,3045,3024,3044 Fragment Coverage tRNA-Arg-TCT-1:A_DSLE_V_TSLE_Z tRNA-Arg-TCT-2:A_DSLE_V_TSLE_Z Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-TCT-1 -GCUCCCGUGGCCUAAU--GGCU-AGGGCAUUUGACUUCUAAUCAAGGG-------------------AUUGCGGGUUCGAGUCCCGCCGGGAGCUCCA [1] tRNA-Arg-TCT-2 -GCUCCCGUGGCCUAAU--GGCU-AGGGCAUUUGACUUCUAAUCAAGGG-------------------AUUGUGGGUUCGAGUCCCGCCGGGAGCUCCA [2] 5017 .GCUCCCGUGGCCUAAU--GGCU-AGGGC...................................................................... [1,2] 3024 ....................................................................AUUGCGGGUUCGAGUCCCGCCGGGAGC.... [1] 3045 .....................................................................UUGUGGGUUCGAGUCCCGCCGGGAGC.... [2] 3044 .....................................................................UUGCGGGUUCGAGUCCCGCCGGGAGC.... [1] 3011 ..........................................................................GGUUCGAGUCCCGCCGGGAGC.... [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,<<<<<<<_____>>>>>>>,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====++=======+++++=======+++=====+++++++============++++ // Fragment Cluster 7: 5021,3020 Fragment Coverage tRNA-Leu-AAG-2:A_DSLE_TLE_Z Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-AAG-2 -GGAAGGUUGUCCGAGU--GGUU-AUGGAGCUAGUUUAAGGCACUAGU-U-CGUGGGUUCGAGUCCCACACCUUUCACCA [1] 5021 .GGAAGGUUGUCCGAGU--GGUU-AUG..................................................... [1] 3020 .........................................................UUCGAGUCCCACACCUUUCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 8: 3048,3023,5043 Fragment Coverage tRNA-Phe-GAA-1:A_DSLE_CS_TSLE_Z Fragment Aminos Phe Fragment Alignment # STOCKHOLM 1.0 tRNA-Phe-GAA-1 -GUCGCAAUGGUGUAGUU-GGG--AGCAUGACAGACUGAAGAUCUGUUGGUCAUCGGUUCGAUCCCGGUUUGUGACACCA [1] 5043 .GUCGCAAUGGUGUAGUU-GGG--AGCAUGACA............................................... [1] 3048 .....................................................UCGGUUCGAUCCCGGUUUGUGAC.... [1] 3023 .............................................................AUCCCGGUUUGUGACACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 9: 5045,5044 Fragment Coverage tRNA-Lys-CTT-1:A_DSLE Fragment Aminos Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Lys-CTT-1 -UCCCGAGUGGCUCAAUC-GGUUUAGAGCGUCUGACUCUUAAUCAGAAGGUUGCGAGUUCGAGUCUCGCCUUGGGAGCCA [1] 5044 .UCCCGAGUGGCUCAAUC-GGUUU........................................................ [1] 5045 .UCCCGAGUGGCUCAAUC-GGUUUAGAGC................................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 10: 3007,5038,5039 Fragment Coverage tRNA-Val-AAC-1:A_DSLE_CS_TE_Z Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-AAC-1 -GGUCGUGUGGUUUAGAU-GGUU-AUAAUUUCUGCUUAACACGCAGACGGUCCCAAGUUCGAGUCUUGGCACGAUCACCA [1] 5038 .GGUCGUGUGGUUUAGAU-GGUU-AU...................................................... [1] 5039 .GGUCGUGUGGUUUAGAU-GGUU-AUAAUUUCU............................................... [1] 3007 ................................................................CUUGGCACGAUCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 11: 3049,3004,5052 Fragment Coverage tRNA-Asp-GTC-1:A_DSLE_TLE_Z Fragment Aminos Asp Fragment Alignment # STOCKHOLM 1.0 tRNA-Asp-GTC-1 -UCUCCUUUAGUAUAGG--GGU--AGUACACAAGCCUGUCACGCUUGCAG-CCCGGGUUCGAAUCCCGGAGGGAGAGCCA [1] 5052 .UCUCCUUUAGUAUAGG--GGU--AGUA.................................................... [1] 3049 .........................................................UUCGAAUCCCGGAGGGAGAGCCA [1] 3004 ..............................................................AUCCCGGAGGGAGA.... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 12: 5054,3053 Fragment Coverage tRNA-Arg-CCT-1:A_DSLE_CS_TLE_Z Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-CCT-1 -UUACGCGUGGCGCAAU--GGU--AGCGCAUCUCAUUCCUAACGAGAAGGUUGCGGGUUCGAGUCCCGUCGUGUAAGCCA [1] 5054 .UUACGCGUGGCGCAAU--GGU--AGCGCAUCUC.............................................. [1] 3053 .........................................................UUCGAGUCCCGUCGUGUAAGCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 13: 5047,5046 Fragment Coverage tRNA-Lys-TTT-1:A_DSLE_CS tRNA-Lys-TTT-2:A_DSLE_CS Fragment Aminos Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Lys-TTT-1 -UCCCGUUUAGCUCAAUC-GGCUUAGAGCGUCCGGCUUUUAACCGGAAGGUUGCGAGUUCGAGUCUCGCAGUGGGAGCCA [1] tRNA-Lys-TTT-2 -UCCCGUUUAGCUCAAUC-GGCUUAGAGCGUCCGGCUUUUAACCGGAAGGUUGCGAGUUCGAAUCUCGCAGUGGGAGCCA [2] 5046 .UCCCGUUUAGCUCAAUC-GGCUUAG...................................................... [1,2] 5047 .UCCCGUUUAGCUCAAUC-GGCUUAGAGCGUCC............................................... [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 14: 5018,3026,3050 Fragment Coverage tRNA-Gly-GCC-1:A_DSLE_CSE_V_TSLE_Z Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-GCC-1 -GCUUUGGUGGUUUAGU--GGU--AUAAUGAAUCGUUGCCAUCGAUUCG-------------------A-CCCGGGUUCGAUUCCCGGCCAAAGCACCA [1] 5018 .GCUUUGGUGGUUUAGU--GGU--AUAAUGAAU.................................................................. [1] 3050 .............................................UUCG-------------------A-CCCGGGUUCGAUUCCCGGCCAAAGC.... [1] 3026 ...........................................................................GUUCGAUUCCCGGCCAAAGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,<<<<<<<_____>>>>>>>,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====++=======+++++=======+++=====+++++++============++++ // Fragment Cluster 15: 3027,5025 Fragment Coverage tRNA-Pro-AGG-1:A_DSLE_CS_V_TSLE_Z Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-AGG-1 -GGCCGUUUGGUCUAGU--GGU--AUGAUACCAUCUUAGGGUGAUGGUG-------------------GUCGUGGGUUCGAUUCCCACAACAGCCCCCA [1] 5025 .GGCCGUUUGGUCUAGU--GGU--AUGAUACCAU................................................................. [1] 3027 .....................................................................UCGUGGGUUCGAUUCCCACAACAGCCCCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,<<<<<<<_____>>>>>>>,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====++=======+++++=======+++=====+++++++============++++ // Fragment Cluster 16: 3033,5040 Fragment Coverage tRNA-Gln-TTG-1:A_DSLE_CS_TSLE_Z tRNA-Gln-CTG-1:A_DSLE_CS_TSLE_Z Fragment Aminos Gln Fragment Alignment # STOCKHOLM 1.0 tRNA-Gln-CTG-1 -GGUUGUAUGGUGUAAU--GGUU-AGCACGUGAGAUUCUGAUUCUCGAGA-CCUGGGUUCGAUUCCCAGUACGACCUCCA [1] tRNA-Gln-TTG-1 -GGUUGUAUGGUGUAAU--GGUU-AGCACGUGAGAUUUUGAUUCUCGAGA-CCUGGGUUCGAUUCCCAGUACGACCUCCA [2] 5040 .GGUUGUAUGGUGUAAU--GGUU-AGCACGUGA............................................... [1,2] 3033 ....................................................CUGGGUUCGAUUCCCAGUACGACCUCCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 17: 3012,5024 Fragment Coverage tRNA-Trp-CCA-1:A_DSLE_TLE_Z Fragment Aminos Trp Fragment Alignment # STOCKHOLM 1.0 tRNA-Trp-CCA-1 -GGCCCCUUAACUCAGUU-GGU--AGAGUGUGAGAUUCCAAAUCUCAAAGUCAAGUGUUCAAGUCACUUAGGGGUCACCA [1] 5024 .GGCCCCUUAACUCAGUU-GGU--AGAGU................................................... [1] 3012 ........................................................GUUCAAGUCACUUAGGGGUC.... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 18: 5010,3013,3006 Fragment Coverage tRNA-Gly-TCC-2:A_DSLE_CS_V_TSLE_Z Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-TCC-2 -GCAUCGAUGGUGUAGC--GGU--AACAUCAAUGCCUUCCAAGCAUUA--------------------GCUCCGGGUUCGACUCCCGGUCGAUGCACCA [1] 5010 .GCAUCGAUGGUGUAGC--GGU--AACAUCAAU.................................................................. [1] 3013 ..............................................UA--------------------GCUCCGGGUUCGACUCCCGGUCGAUGC.... [1] 3006 ........................................................................CGGGUUCGACUCCCGGUCGAUGC.... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,<<<<<<<_____>>>>>>>,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====++=======+++++=======+++=====+++++++============++++ // Fragment Cluster 19: 5015,5016,3002 Fragment Coverage tRNA-Leu-TAA-1:A_DSLE_V_TSLE_Z Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-TAA-1 -GCGGCUAUGCCCGAGU--GGUCUAAGGGGGCAGAUUUAAGCCCUGCU-GUU----GUAA-----AACG-CGAGAGUUCGAACCUCUCUGGCCGCACCA [1] 5015 .GCGGCUAUGCCCGAGU--GGUCUAA......................................................................... [1] 5016 .GCGGCUAUGCCCGAGU--GGUCUAAGG....................................................................... [1] 3002 .................................................................AACG-CGAGAGUUCGAACCUCUCUGGCCGC.... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,<<<<<<<_____>>>>>>>,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====++=======+++++=======+++=====+++++++============++++ // Fragment Cluster 20: 5050,3031,5049,5048 Fragment Coverage tRNA-Glu-CTC-1:A_DSLE_CS_TLE_Z Fragment Aminos Glu Fragment Alignment # STOCKHOLM 1.0 tRNA-Glu-CTC-1 -UCCGUCAUGGUCCAGU--GGCU-AGGAUUCAUCGCUCUCACCGAUGCGG-CGGGGGUUCGAUUCCCCCUGACGGAGCCA [1] 5048 .UCCGUCAUGGUCCAGU--GGCU-AG...................................................... [1] 5049 .UCCGUCAUGGUCCAGU--GGCU-AGG..................................................... [1] 5050 .UCCGUCAUGGUCCAGU--GGCU-AGGAUUCAU............................................... [1] 3031 .........................................................UUCGAUUCCCCCUGACGGAGCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 21: 3005,5051,3051 Fragment Coverage tRNA-Glu-TTC-1:A_DSLE_CSE_V_TSLE_Z Fragment Aminos Glu Fragment Alignment # STOCKHOLM 1.0 tRNA-Glu-TTC-1 -UCCGUUGUGGUCCAAC--GGCU-AGGAUUCGUCGCUUUCACCGACGCG-------------------G-UCGGGGUUCGACUCCCCGCAACGGAGCCA [1] 5051 .UCCGUUGUGGUCCAAC--GGCU-AGGAUUCGU.................................................................. [1] 3005 .............................................CGCG-------------------G-UCGGGGUUCGACUCCCCGCAACGGA.... [1] 3051 .......................................................................CGGGGUUCGACUCCCCGCAACGGAGCCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,<<<<<<<_____>>>>>>>,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====++=======+++++=======+++=====+++++++============++++ // Fragment Cluster 22: 5011,3018,3038,3039,3010,5009 Fragment Coverage tRNA-Gly-TCC-1:A_DSLE_CS_TSLE_Z tRNA-Gly-CCC-1:A_DSLE_CS_TSLE_Z tRNA-Gly-TCC-3:A_DSLE_CS_V_TSLE_Z Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-CCC-1 -GCAUUAGUGGUGUAGC--GGU--AACAUUGGAGCUUCCCAUGCUCUA--------------------GCUCCGGGUUCGACUCCCGGCUGAUGCACCA [1] tRNA-Gly-TCC-1 -GCAUCAGUGGUGUAGC--GGU--AACAUCAAUGCCUUCCAAGCAUUA--------------------GCUCCGGGUUCGACUCCCGGCUGAUGCACCA [2] tRNA-Gly-TCC-3 -GCAUCAGUGGUGUAGC--GGU--AACAUCAAUGCCUUCCAAGCAUUA--------------------GCUCCGGGUUCGACUCCCGGUUGAUGCACCA [3] 5011 .GCAUUAGUGGUGUAGC--GGU--AACAUUGGA.................................................................. [1] 5009 .GCAUCAGUGGUGUAGC--GGU--AACAUCAAU.................................................................. [2,3] 3039 ..............................................UA--------------------GCUCCGGGUUCGACUCCCGGUUGAUGC.... [3] 3038 ..........................................................................GGUUCGACUCCCGGCUGAUGC.... [1,2] 3010 ..........................................................................GGUUCGACUCCCGGUUGAUGC.... [3] 3018 ............................................................................UUCGACUCCCGGCUGAUGCACCA [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,<<<<<<<_____>>>>>>>,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====++=======+++++=======+++=====+++++++============++++ // Fragment Cluster 23: 5002 Fragment Coverage tRNA-Val-CAC-1:A_DSLE_CS Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-CAC-1 -AGUCCCGUGUUCUAGU--GGU--AUGAUUUCUCCUUCACACGGAGAAGGUCCCGGGUUCGAUCCCCGGCGGGACUACCA [1] 5002 .AGUCCCGUGUUCUAGU--GGU--AUGAUUUCUCC............................................. [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 24: 5006 Fragment Coverage tRNA-Ser-GCT-1:A_DSL Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-GCT-1 -GACAACGUGGCCGAGU--GGUUUuAAGGCGUUCGCCUGCUAAGCGGAU-G-CGCAGGUUCGAAUCCUGCCGUUGUCGCCA [1] 5006 .GACAACGUGGCCGAGU--GGUUUUA....................................................... [1] #=GC SS_cons :(((((((,,<<<<__________._>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====++++++++++.+====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 25: 5012 Fragment Coverage tRNA-Thr-TGT-1:A_DSLE_CS Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-TGT-1 -GCCCCUAUGGCUUAGU--GGU--ACAGCAUCGCACUUGUAAUGCGAAGAUCCUUGGUUCGAUUCCGAGUGGGGGCACCA [1] 5012 .GCCCCUAUGGCUUAGU--GGU--ACAGCAUCGC.............................................. [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 26: 5019 Fragment Coverage tRNA-Leu-AAG-1:A_DSLE Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-AAG-1 -GGAAGGGUGUCCGAGU--GGUU-AUGGAGCUAGUUUAAGGCACUAGU-U-CGUGGGUUCGAGUCCCACCCCUUUCACCA [1] 5019 .GGAAGGGUGUCCGAGU--GGUU-AUGGA................................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 27: 5022 Fragment Coverage tRNA-Leu-TAG-1:A_DSLE_CS Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-TAG-1 -GGAUGGGUGUCCGAGU--GGUU-AUGGAGCUGGCUUUAGGCGCCAGU-U-CGCGGGUUCGAGUCCCGUCCCAUUCACCA [1] 5022 .GGAUGGGUGUCCGAGU--GGUU-AUGGAGCU................................................ [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 28: 5023 Fragment Coverage tRNA-Leu-CAA-1:A_DSLE Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-CAA-1 -GGCCAGUUGGCCGAGC--GGUCUAUGGCGCAGCACUCAAGUUGCUGU-G-CGAGGGUUCGAAUCCCUCACUGGUCACCA [1] 5023 .GGCCAGUUGGCCGAGC--GGUCUAUG..................................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 29: 5028 Fragment Coverage tRNA-Leu-CAG-1:A_DSLE Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-CAG-1 -GGCGAAGUGGCCGAGU--GGUCUAUGGCGCUAGCUUCAGGUGCUAGU-G-CGUGGGUUCGAACCCCACCUUCGUCACCA [1] 5028 .GGCGAAGUGGCCGAGU--GGUCUAUGGC................................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 30: 5032 Fragment Coverage tRNA-Pro-TGG-2:A_DSLE_CS Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-TGG-2 -GGCUUCGUGGUGUAGU--GGU--AGCAUACUUCGUUUGGGUCGAAGUGGUCAGGGGUUCGAUCCCCCUCGAAGCCCCCA [1] 5032 .GGCUUCGUGGUGUAGU--GGU--AGCAUACUU............................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 31: 5034 Fragment Coverage tRNA-Ala-CGC-1:A_DSLE_CS Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-CGC-1 -GGGGAUGUAGUUUAGG--GGU--AUAACGUUUCAUUCGCAUUGAAAAGGUCCCGGGUUCGAUUCCCGGCAUCUCCACCA [1] 5034 .GGGGAUGUAGUUUAGG--GGU--AUAACGUUUC.............................................. [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 32: 5035 Fragment Coverage tRNA-Cys-GCA-2:A_DSLE tRNA-Cys-GCA-1:A_DSLE Fragment Aminos Cys Fragment Alignment # STOCKHOLM 1.0 tRNA-Cys-GCA-1 -GGGGUCAUAGCUCAGU--GGUU-AGAGUGAGGGAUUGCAGAUCCCCAGGUCGCUGGUUCAAAUCCGGCUGGUCCCUCCA [1] tRNA-Cys-GCA-2 -GGGGUCAUAGCUCAGU--GGUU-AGAGUGAGGGAUUGCAGAUCCCCAGGUCACUGGUUCAAAUCCGGUUGGUCCCUCCA [2] 5035 .GGGGUCAUAGCUCAGU--GGUU-AGA..................................................... [1,2] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 33: 5037 Fragment Coverage tRNA-Asn-GTT-1:A_DSLE_CS Fragment Aminos Asn Fragment Alignment # STOCKHOLM 1.0 tRNA-Asn-GTT-1 -GGUCGGGUAGCGUAGUU-GGUU-AUUGCGCACGACUGUUAAUCGUGAGGUCGAGGGUUCGAGUCCCUCCCUGACCGCCA [1] 5037 .GGUCGGGUAGCGUAGUU-GGUU-AUUGCGCAC............................................... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 34: 5041 Fragment Coverage tRNA-Pro-TGG-1:A_DSLE_CS Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-TGG-1 -GGUUUCGUGGUGUAGU--GGU--AGCAUACUUCGUUUGGGUCGAAGUGGUCACGGGUUCAAUCCCCGUCGAAACCCCCA [1] 5041 .GGUUUCGUGGUGUAGU--GGU--AGCAUACUUC.............................................. [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 35: 5042 Fragment Coverage tRNA-Ser-CGA-1:A_DSLE tRNA-Ser-TGA-1:A_DSLE tRNA-Ser-TGA-2:A_DSLE Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-CGA-1 -GUCACUAUGUCCGAGU--GGUU-AAGGAGUUAGACUCGAAAUCUAAU-G-CGCAGGUUCAAAUCCUGCUGGUGACGCCA [1] tRNA-Ser-TGA-1 -GUCACUAUGUCCGAGU--GGUU-AAGGAGUUAGACUUGAAAUCUAAU-G-CGCAGGUUCAAAUCCUGCUGGUGACGCCA [2] tRNA-Ser-TGA-2 -GUCACUAUGUCCGAGU--GGUU-AAGGAGUUAGACUUGAAAUCUAAU-G-CGCAGGUUCAAAUCCUGCUGGUGACGCCA [3] 5042 .GUCACUAUGUCCGAGU--GGUU-AA...................................................... [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 36: 3014 Fragment Coverage tRNA-Val-TAC-1:V_TSLE_Z Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-TAC-1 -GCAUCUGUAGUCUAGU--GGUU-AUGAUUUCUGCUUUACACGCAGACG-------------------GUCCCAGGUUCGAUCCCUGGUAGAUGCACCA [1] 3014 .....................................................................UCCCAGGUUCGAUCCCUGGUAGAUGCA... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,<<<<<<<_____>>>>>>>,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====++=======+++++=======+++=====+++++++============++++ // Fragment Cluster 37: 3019 Fragment Coverage tRNA-Met-CAT-1:TLE_Z Fragment Aminos Met Fragment Alignment # STOCKHOLM 1.0 tRNA-Met-CAT-1 -GCUUCUGUAGCUCAGUC-GGUG-GUAGCAUCCCUCUCAUAAGGGGAAGGUCGUGAGUUCGAGCCUCACCAGGAGCACCA [1] 3019 .........................................................UUCGAGCCUCACCAGGAGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 38: 3030 Fragment Coverage tRNA-Gln-TTG-2:TLE_Z Fragment Aminos Gln Fragment Alignment # STOCKHOLM 1.0 tRNA-Gln-TTG-2 -GGUUGUAUGGUGUAGC--GGUU-AGCACGCGAGAUUUUGAUUCUCGAGA-UCUGGGUUCGACUCCCAGUACGACCUCCA [1] 3030 .........................................................UUCGACUCCCAGUACGACCUCC. [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 39: 3032 Fragment Coverage tRNA-Ala-TGC-1:TE_Z Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-TGC-1 -GGGCAUGUGAUGCAGU--GGU--AGCAUGCUCGCUUUGCAUGCGAGUCGUCCUGGGUUCAAUCCCCAGCGUGUCCACCA [1] 3032 ..................................................................CAGCGUGUCCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 40: 3035 Fragment Coverage tRNA-Thr-AGT-1:TLE_Z Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-AGT-1 -GCUCUUGUAGCUCAGU--GGU--AGAGCGCUUGCCUAGUAAGCAAGAGGCCCAGUGUUCGAGUCACUGCUGGAGCACCA [1] 3035 .........................................................UUCGAGUCACUGCUGGAGCACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 41: 3047 Fragment Coverage tRNA-Ile-AAT-1:V_TSLE_Z Fragment Aminos Ile Fragment Alignment # STOCKHOLM 1.0 tRNA-Ile-AAT-1 -GGUCGCAUGAUGUAGUC-GGUU-AUCAUGUCGAUCUAAUAAGUCGAAU-------------------GUCGCCGGUUCGAACCCGGCUGUGACCACCA [1] 3047 .....................................................................UCGCCGGUUCGAACCCGGCUGUGACC.... [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,<<<<<<<_____>>>>>>>,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====++=======+++++=======+++=====+++++++============++++ //