Fragment Cluster 1: 1001 Fragment Coverage tRNA-Gly-CCC-1-1: Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-CCC-1-1 UCCUUUCUAAAUUACUAUAUAGAUUGCAACAUCAGUCUAAAUAUCUGAAUGCAUUAGUGGUGUAGC--GGU--AACAUUGGAGCUUCCCAUGCUCUA-GCUCCGGGUUCGACUCCCGGCUGAUGCAAAUAUAGCUGUGAAUUUUUAAAAAUAUAAUUGUUUAUGUUCUAAAAUUGG [1] 1001 ..............................................................................................................................AAUAUAGCUGUGAAUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 2: 1002 Fragment Coverage tRNA-Gly-TCC-1-1: Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-TCC-1-1 CUGCUUUUGUAACAAUAUAUAACAUAUUCUUUAACCUCUAAAUAAUAAAUGCAUCAGUGGUGUAGC--GGU--AACAUCAAUGCCUUCCAAGCAUUA-GCUCCGGGUUCGACUCCCGGCUGAUGCAGUUUAAUAUUUGCUUUUUUAGAUUAUCUACUAAAAUGAAUAUCAUUCUAC [1] 1002 ..............................................................................................................................GUUUAAUAUUUGCUUUU................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 3: 1003 Fragment Coverage tRNA-Asp-GTC-1-8: Fragment Aminos Asp Fragment Alignment # STOCKHOLM 1.0 tRNA-Asp-GTC-1-8 UAAUAUGAGUAUUACAAUAUGUAUAACUAAAAAAAAUAAGUUUUCAAUAAUCUCCUUUAGUAUAGG--GGU--AGUACACAAGCCUGUCACGCUUGCAG-CCCGGGUUCGAAUCCCGGAGGGAGAGUAAAUAAUUGAAACUUUUUUAUUUAGCUAAACAAAGCUUAGUUUUUGAAG [1] 1003 ..............................................................................................................................UAAAUAAUUGAAACUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 4: 1004 Fragment Coverage tRNA-Thr-TGT-2-1: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-TGT-2-1 UAAAACUAGCAUUAGUAUAUAUAAUUUAAUAAAUACAUUCCGACGAUACUGCCUCUAUGGCUUAGU--GGU--ACAGCAUCGCACUUGUAAUGCGAAGAUCCUUGGUUCGAUUCCGAGUGGAGGCAUAUACAUUAUAUUAUAUUCUUUUUCAUGCGGAAAAAAGAUUUCAAAUUUU [1] 1004 ..............................................................................................................................UAUACAUUAUAUUAUAUUCUU............................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 5: 1005 Fragment Coverage tRNA-Gln-TTG-1-1: Fragment Aminos Gln Fragment Alignment # STOCKHOLM 1.0 tRNA-Gln-TTG-1-1 UCAUAUUAUAUAAUAGUAUAAUAAUAACAAAAUUUACCUAGCAUUCGAACGGUUGUAUGGUGUAAU--GGUU-AGCACGUGAGAUUUUGAUUCUCGAGA-CCUGGGUUCGAUUCCCAGUACGACCUUUAUAACCGUUCCUUUUUACAUUUUUGCUAAAAUUAGAUUCAAAUGAUAC [1] 1005 ..............................................................................................................................UUAUAACCGUUCCUUUU................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 6: 1006 Fragment Coverage tRNA-Gln-TTG-1-2: Fragment Aminos Gln Fragment Alignment # STOCKHOLM 1.0 tRNA-Gln-TTG-1-2 UAAAAUUAACCUUGCGUAAAUAUUACUAAGUUCUUCUUGUAAUUAAGGACGGUUGUAUGGUGUAAU--GGUU-AGCACGUGAGAUUUUGAUUCUCGAGA-CCUGGGUUCGAUUCCCAGUACGACCUUUAUAACCGUUCUCAUUUUUUUGCUUCAAUUUCGUACAAACAAUUUGUUU [1] 1006 ..............................................................................................................................UUAUAACCGUUCUCAUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 7: 1007 Fragment Coverage tRNA-Gly-GCC-1-1: Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-GCC-1-1 UAUGCUGGUAACUCCUACUAAAUGAUUAGAAAGAGGGAAUAUAUCAAUAAGCUUUGGUGGUUUAGU--GGU--AUAAUGAAUCGUUGCCAUCGAUUCGA-CCCGGGUUCGAUUCCCGGCCAAAGCAUUGAAGUUAAUUUCAUUUUUUUAAAAAACAUUUCAGAAAGGAAUAUAUUA [1] 1007 ..............................................................................................................................UUGAAGUUAAUUUCAUU................................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 8: 1008 Fragment Coverage tRNA-Lys-CTT-1-8: tRNA-Lys-CTT-1-7: Fragment Aminos Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Lys-CTT-1-7 AAAAGGUAAUAAAUAUAAAUUGUUCUAUGUAUACUCUCAGCUAAAACCCGUCCCGAGUGGCUCAAUC-GGUUUAGAGCGUCUGACUCUUAugauggucAUCAGAAGGUUGCGAGUUCGAGUCUCGCCUUGGGAGUUUAGUAAUCCUAGUAUUGGGAUUUAAAUUAUUUUUUAUUCUGAUUGAAU [1] tRNA-Lys-CTT-1-8 AAAAGGUAAUAAAUAUAAAUUGUUCUAUGUAUACUCUCAGCUAAAACCCGUCCCGAGUGGCUCAAUC-GGUUUAGAGCGUCUGACUCUUAugauggucAUCAGAAGGUUGCGAGUUCGAGUCUCGCCUUGGGAGUUUAGUAAUCCUAGUAUUGGGAUUUAAAUUAUUUUUUAUUCUGAUUGAAU [2] 1008 ......................................................................................................................................UUUAGUAAUCCUAGUAUUGGGA............................ [1,2] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<______........_>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***+........+=====+++++=====+++++++============+.................................................. // Fragment Cluster 9: 1009 Fragment Coverage tRNA-Gln-TTG-2-2: Fragment Aminos Gln Fragment Alignment # STOCKHOLM 1.0 tRNA-Gln-TTG-2-2 AUUAACAAGGAAAUAUUUACAUAUAUCAAGAAGUACUUGCUGCCAAGCCAGGUUGUAUGGUGUAGC--GGUU-AGCACGCGAGAUUUUGAUUCUCGAGA-UCUGGGUUCGACUCCCAGUACGACCUUUUCCUCCAGUGUUCACUUUUUAAUCAUCAUUUCAUCUUUUUUGCAGUUU [1] 1009 ..............................................................................................................................UUUCCUCCAGUGUUCACUUUU............................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 10: 1010 Fragment Coverage tRNA-Thr-TGT-1-1: Fragment Aminos Thr Fragment Alignment # STOCKHOLM 1.0 tRNA-Thr-TGT-1-1 AAAAUAUCUACUUAUUAAUAUGUUACUUCAAAUCUGCAGCAAUCAACGUUGCCCCUAUGGCUUAGU--GGU--ACAGCAUCGCACUUGUAAUGCGAAGAUCCUUGGUUCGAUUCCGAGUGGGGGCAAUUUGUAUUCUUGUUAUUGCUUACUUUUAUUAGGAGGAGCAUCGUACAGC [1] 1010 ..............................................................................................................................AUUUGUAUUCUUGUUAUUGCU............................. [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 11: 1011 Fragment Coverage tRNA-Gly-GCC-1-3: Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-GCC-1-3 ACUCAUACUAUUUAAAUAUCACUUAACUUACUCAUGUGUAUAAUUAAGAGGCUUUGGUGGUUUAGU--GGU--AUAAUGAAUCGUUGCCAUCGAUUCGA-CCCGGGUUCGAUUCCCGGCCAAAGCAUACGAUUUUACGAUCUGAACUUACUUUUUUCAUAAACACAAAUUUGUAAA [1] 1011 ..............................................................................................................................UACGAUUUUACGAUCUGAACUUACUUUU...................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. //