Fragment Cluster 1: 3012,5020,3007,3008,3002 Fragment Coverage tRNA-Val-CAC-19:A_DSL_TE_Z tRNA-Val-AAC-17:A_DSL_TE_Z tRNA-Val-AAC-3:TLE_Z tRNA-Val-AAC-19:A_DSL tRNA-Val-AAC-6:A_DSL_TLE_Z tRNA-Val-AAC-2:TE_Z tRNA-Val-AAC-5:TE_Z tRNA-Val-AAC-8:TE_Z tRNA-Val-AAC-9:A_DSL_TE_Z tRNA-Val-CAC-4:A_DSL_TE_Z tRNA-Val-CAC-2:A_DSL_TE_Z tRNA-Val-CAC-5:A_DSL_TE_Z tRNA-Val-CAC-18:A_DSL_TE_Z tRNA-Val-CAC-7:A_DSL_TE_Z tRNA-Val-AAC-21:TE_Z tRNA-Val-CAC-17:A_DSL_TE_Z tRNA-Val-CAC-3:A_DSL_TE_Z tRNA-Val-CAC-8:A_DSL tRNA-Val-CAC-9:A_DSL tRNA-Val-CAC-10:A_DSL_TE_Z tRNA-Val-CAC-11:A_DSL tRNA-Val-CAC-13:TE_Z tRNA-Val-CAC-14:TLE_Z tRNA-Val-CAC-15:A_DSL_TE_Z tRNA-Val-AAC-7:A_DSL_TE_Z tRNA-Val-AAC-4:A_DSL tRNA-Val-AAC-12:TE_Z tRNA-Val-AAC-13:A_DSL_TLE_Z tRNA-Val-AAC-11:A_DSL tRNA-Val-AAC-14:A_DSL_TE_Z tRNA-Val-AAC-15:A_DSL tRNA-Val-AAC-18:A_DSL_TLE_Z tRNA-Val-AAC-16:TE_Z Fragment Aminos Val Fragment Mismatches U:62:C:1 Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-AAC-2 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAACACCA [1] tRNA-Val-AAC-3 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAGACCGGGCAGAAACACCA [2] tRNA-Val-AAC-4 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGGAACACCA [3] tRNA-Val-AAC-5 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCAAAACCGGGCAGAAACACCA [4] tRNA-Val-AAC-6 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUAACACGUGAAAGGUCCCCGGUUCGAGACCGGGCAGAAACACCA [5] tRNA-Val-AAC-7 -GUUUCUGUAGUGUAGC--GGUU-AUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAACACCA [6] tRNA-Val-AAC-8 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUUGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAACACCA [7] tRNA-Val-AAC-9 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUAACACGCGAAAAGUCCCCGGUUCGAAACCGGGCAGAAACACCA [8] tRNA-Val-AAC-11 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAACGCCA [9] tRNA-Val-AAC-12 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUAACCCGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAACACCA [10] tRNA-Val-AAC-13 -GUUUCUGUAGUGUAGU--GGUU-AUCAUGUUUGCCUAACACGCGAAAGGUCCCCGGUUCGAGACCGGGCAGAAACACCA [11] tRNA-Val-AAC-14 -GUUUCUGUAGUGUAGU--AGUU-AUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAACACCA [12] tRNA-Val-AAC-15 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUAACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAUACACCA [13] tRNA-Val-AAC-16 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUAACACGCGAAAGGUCCCUGCUUCGAAACCGGGCAGAAACACCA [14] tRNA-Val-AAC-17 -GUUUCUGUAGUGUAGU--AGUU-AUCACGUUCGCCUAACACACGAAAGGUCCCCGGUUCGAAACCGGGCAGAAACACCA [15] tRNA-Val-AAC-18 -GUUUCUGUAGUGUAGU--GGUU-GUCACGUUCACCUAACACGCGAAAGGUCCCCGGUUCGAGACCGGGCAGAAACACCA [16] tRNA-Val-AAC-19 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCACCUAACACGCGAAAAGUCCCCGGUUCGAAACCGGCCAGAAACACCA [17] tRNA-Val-AAC-21 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUUGCCUAACAUGUGAAAGGUCCCUGGUUUUAAACCGGGCAGAAACACCA [18] tRNA-Val-CAC-2 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAACACCA [19] tRNA-Val-CAC-3 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCUUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAACACCA [20] tRNA-Val-CAC-4 -GUUUCUGUAGUGUAGU--GGUU-AUCAUGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAACACCA [21] tRNA-Val-CAC-5 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAGUUCCCCGGUUCGAAACCGGGCAGAAACACCA [22] tRNA-Val-CAC-7 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAAGUCCCCGGUUCGAAACCGGGCAGAAACACCA [23] tRNA-Val-CAC-8 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAGCACCA [24] tRNA-Val-CAC-9 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGUGCAGAAACACCA [25] tRNA-Val-CAC-10 -GUUUCUGUAGUGUAGU--GGUU-AUCCCGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAACACCA [26] tRNA-Val-CAC-11 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCGCGCAGAAACACCA [27] tRNA-Val-CAC-13 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAAGUCCCCCGUUCGAAACCGGGCAGAAACACCA [28] tRNA-Val-CAC-14 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACGUGAAAGGUCCCCAGUUUGAAACCGGGCAGAAACACCA [29] tRNA-Val-CAC-15 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUCGCCUCACACCCGAAAGGUCCCCGGUUCGAAACCGGGCAGAAACACCA [30] tRNA-Val-CAC-17 -GUUUCUGUAGUGUAGU--GGUU-AUCACGUUUGCCUCACACGCGAAA---CCCCUGUUCGAAACCGGGCAGAAACACCA [31] tRNA-Val-CAC-18 -GUUUCUGUAGUGUAGU--GGUU-AUCACGCUCGCCUCACACGCGAAAGGUGCCCCGUUCGAAACCGGGCAGAAACACCA [32] tRNA-Val-CAC-19 -GUUUCUGUAGUGUAUU--GGUU-AUCACGUUCGCCUCACACGCGAAAGGUCCACGGGUCGAAACCGGGCAGAAACACCA [33] 5020 .GUUUCUGUAGUGUA................................................................. [3,5,6,8,9,11,12,13,15,16,17,19,20,21,22,23,24,25,26,27,30,31,32,33] 3012 ..........................................................UCGAGACCGGGCAGAAACACCA [2,5,11,16] 3002 ..........................................................UUGAAACCGGGCAGAAACACCA [29] 3007 ...............................................................ACCGGGCAGAAACACCA [1,2,4,5,6,7,8,10,11,12,14,15,16,18,19,20,21,22,23,26,28,29,30,31,32,33] 3008 ...............................................................ACUGGGCAGAAACACCA [1,2,4,5,6,7,8,10,11,12,14,15,16,18,19,20,21,22,23,26,28,29,30,31,32,33] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 2: 5022,3011 Fragment Coverage tRNA-Glu-TTC-3:A_DSL_TLE_Z tRNA-Glu-TTC-11:A_DSL tRNA-Glu-TTC-13:A_DSL_TLE_Z tRNA-Glu-TTC-15:A_DSL_TLE_Z tRNA-Glu-TTC-14:A_DSL tRNA-Glu-TTC-8:A_DSL tRNA-Glu-TTC-10:A_DSL_TLE_Z tRNA-Glu-TTC-1:A_DSL_TLE_Z tRNA-Glu-TTC-6:A_DSL tRNA-Glu-TTC-7:A_DSL_TLE_Z tRNA-Glu-TTC-9:A_DSL tRNA-Glu-TTC-5:A_DSL_TLE_Z tRNA-Glu-TTC-4:TLE_Z tRNA-Glu-TTC-2:TLE_Z Fragment Aminos Glu Fragment Alignment # STOCKHOLM 1.0 tRNA-Glu-TTC-1 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUCCCGGUAUGGGAACCA [1] tRNA-Glu-TTC-2 -UCCCGUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUCCCGGUAUGGGAACCA [2] tRNA-Glu-TTC-3 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCUGGGUUCGACUCCCGGUAUGGGAACCA [3] tRNA-Glu-TTC-4 -UCCCAUGUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCUGGGUUCGACUCCCGGUAUGGGAACCA [4] tRNA-Glu-TTC-5 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACUCAGGCGG-CCCGGGUUCGACUCCCGGUAUGGGAACCA [5] tRNA-Glu-TTC-6 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUUGACUCCCGGUAUGGGAACCA [6] tRNA-Glu-TTC-7 -UCCCAUAUGGUCUAGC--GGUU-AGAAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUCCCGGUAUGGGAACCA [7] tRNA-Glu-TTC-8 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUGCCGGUAUGGGAACCA [8] tRNA-Glu-TTC-9 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUCCCGUUAUGGGAACCA [9] tRNA-Glu-TTC-10 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCGG-CCCUGGUUCGACUCCCGGUAUGGGAACCA [10] tRNA-Glu-TTC-11 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUUCUGGUUUUCACCCAGGCGG-CCCGGGUUCGACUCCCGGUAUGGUAACCA [11] tRNA-Glu-TTC-13 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCUCUCAGGCGG-CCCGGGUUCGACUCCCGGUAUGGGAACCA [12] tRNA-Glu-TTC-14 -UCCCAUAUGGUCUAGC--GGUU-AGGAUUCCUGGUUUUCACCCAGGCAG-CCCGGGUUCGACUGCCGGUAUGGGAACCA [13] tRNA-Glu-TTC-15 -UCCCAUAUGGUCUAGC--GCUU-AGGAUUCCUGGUUUUCACCCAGUUGG-CCCGGGUUCGACUCCCGGUAUGGGAACCA [14] 5022 .UCCCAUAUGGUCUAGC............................................................... [1,3,5,6,7,8,9,10,11,12,13,14] 3011 ..........................................................UCGACUCCCGGUAUGGGAACCA [1,2,3,4,5,7,10,12,14] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 3: 5002,3009 Fragment Coverage tRNA-Leu-TAA-30:A_DS_TLE_Z tRNA-Leu-TAA-31:A_DS_TLE_Z tRNA-Leu-TAA-18:A_DS_TLE_Z tRNA-Leu-TAA-19:A_DS_TLE_Z tRNA-Leu-TAA-12:A_DS_TLE_Z tRNA-Leu-TAA-13:A_DS_TLE_Z tRNA-Leu-TAA-10:A_DS tRNA-Leu-TAA-11:A_DS_TLE_Z tRNA-Leu-TAA-16:A_DS tRNA-Leu-TAA-17:A_DS_TLE_Z tRNA-Leu-TAA-14:TLE_Z tRNA-Leu-TAA-15:A_DS_TLE_Z tRNA-Leu-TAA-27:TLE_Z tRNA-Leu-TAA-8:A_DS_TLE_Z tRNA-Leu-TAA-2:A_DS tRNA-Leu-TAA-4:A_DS_TLE_Z tRNA-Leu-TAA-21:TLE_Z tRX-Leu-NNN-5:TLE_Z tRNA-Leu-TAA-9:A_DS_TLE_Z tRNA-Leu-TAA-29:TLE_Z tRNA-Leu-TAA-28:A_DS tRNA-Leu-TAA-22:A_DS tRNA-Leu-TAA-3:A_DS tRNA-Leu-TAA-24:A_DS_TLE_Z tRNA-Leu-TAA-5:A_DS_TLE_Z tRNA-Leu-TAA-6:A_DS_TLE_Z tRNA-Leu-TAA-7:A_DS_TLE_Z Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRX-Leu-NNN-5 -ACAC.GGAUGGCUGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-CGUGGGUUCAAACCCCACUCCUGGUACCA [1] tRNA-Leu-TAA-2 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-CGUGGGUUCGAACCCCACUUCUGGUACCA [2] tRNA-Leu-TAA-3 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-CGUGGGUUCGAACCCCACUUCUGGUACCA [3] tRNA-Leu-TAA-4 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-CGUGGGUUCGAACCCCACUCCUGGUACCA [4] tRNA-Leu-TAA-5 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-CGUGGGUUCGAACCCCACUCCUGGUACCA [5] tRNA-Leu-TAA-6 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-CGUGGGUUCGAACCCCACUCCUGGUACCA [6] tRNA-Leu-TAA-7 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-CGUGGGUUCAAACCCCACUCCUGGUACCA [7] tRNA-Leu-TAA-8 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-CGUGGGUUCGAACCCCACUCCUGGUACCA [8] tRNA-Leu-TAA-9 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-A-CGUGGGUUCGAACCCCACUCCUGGUACCA [9] tRNA-Leu-TAA-10 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-CGUGGGUUCGAGCCCCACUCCUGGUACCA [10] tRNA-Leu-TAA-11 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-CGUGGGUUCAAACCCCACUCCUGGUACCA [11] tRNA-Leu-TAA-12 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGGUCCAAU-G-CGUGGGUUCAAACCCCACUCCUGGUACCA [12] tRNA-Leu-TAA-13 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-CGUGGGUUCCAACCCCACUCCUGGUACCA [13] tRNA-Leu-TAA-14 -ACCA.GGAUGGCUGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-CGUGGGUUCAAACCCCACUCCUGGUACCA [14] tRNA-Leu-TAA-15 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.GCUUAAGAUCCAAU-G-CGUGGGUUCAAACCCCACUCCUGGUACCA [15] tRNA-Leu-TAA-16 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-A-CGUGGGUUUGAACCCCACUUCUGGUACCA [16] tRNA-Leu-TAA-17 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-A-CGUGGGUUCCAACCCCACUCCUGGUACCA [17] tRNA-Leu-TAA-18 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.GCUUAAGAUCCAAU-G-CGUGGGUUCGAACCCCACUCCUGGUACCA [18] tRNA-Leu-TAA-19 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-CGUGGGUUCCGACCCCACUCCUGGUACCA [19] tRNA-Leu-TAA-21 -GCCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-UGUGGGUUUGAACCCCACUCCUGGUACCA [20] tRNA-Leu-TAA-22 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-CGUGGGUUCCAACCCCACUCCUGUUACCA [21] tRNA-Leu-TAA-24 -ACCA.GGAUGGCCGAGU--GGUU-AAGGCGUUGG.GCUUAAGAUCCAAU-G-CGUGGGUUCCGACCCCACUCCUGGUACCA [22] tRNA-Leu-TAA-27 -ACCA.GGAUGGCUGAGU--GGUU-AAGCCAUUGG.ACUUAAGAUCCAAU-A-CGUGGGUUUGAACCCCACUCCUGGUACCA [23] tRNA-Leu-TAA-28 -ACCA.GGAUGGCCGAGU--GGUU-GAAGCGUUGG.AUUUAAGAUCCAAU-G-CGUGGGUUUGAACCCCACUCCUGGUUCCA [24] tRNA-Leu-TAA-29 -ACUAuGUAUGGCCGAGU--GGUU-AAGGCGUUGG.ACUUAAGAUCCAAU-G-CGUGGGUUCAAACCCCACUCCUGGUACCA [25] tRNA-Leu-TAA-30 -ACCA.GGAUGGCCGAGU--GGUA-AAGGUGUUGGgGCUUAAGAUCCAAU-G-CGUGGGUUCAAACCCCACUCCUGGUACCA [26] tRNA-Leu-TAA-31 -ACCA.GGAUGGCCGAGU--GGUC-AAGACGUUGG.ACCUAAGAUCCAAU-G-CGUGUGUUCGAACCCCACUCCUGGUACCA [27] 5002 .ACCA.GGAUGGCCG................................................................... [2,3,4,5,6,7,8,9,10,11,12,13,15,16,17,18,19,21,22,24,26,27] 3009 ................................................................ACCCCACUCCUGGUACCA [1,4,5,6,7,8,9,11,12,13,14,15,17,18,19,20,22,23,25,26,27] #=GC SS_cons :((((.(((,,<<<<___________>>>>,<<<<.<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +====.===++====+++++++++++====+====.=++***++=====+++++=====+++++++============++++ // Fragment Cluster 4: 3010,5007 Fragment Coverage tRNA-Ser-GCT-46:TLE_Z tRNA-Ser-GCT-14:TLE_Z tRNA-Ser-GCT-8:TLE_Z tRNA-Ser-GCT-9:A_DSLE_TLE_Z tRNA-Ser-GCT-4:A_DSLE_TLE_Z tRNA-Ser-GCT-5:A_DSLE tRNA-Ser-GCT-6:A_DSLE_TLE_Z tRNA-Ser-GCT-7:A_DSLE tRNA-Ser-GCT-1:TLE_Z tRNA-Ser-GCT-2:A_DSLE_TLE_Z tRNA-Ser-GCT-12:TLE_Z tRNA-Ser-GCT-28:TLE_Z tRNA-Ser-GCT-35:TLE_Z tRNA-Ser-GCT-47:A_DSLE tRNA-Ser-GCT-41:TLE_Z tRNA-Ser-GCT-43:TLE_Z tRNA-Ser-GCT-29:TLE_Z tRNA-Ser-GCT-27:TLE_Z tRNA-Ser-GCT-26:TLE_Z tRNA-Ser-GCT-25:A_DSLE_TLE_Z tRNA-Ser-GCT-24:A_DSLE_TLE_Z tRNA-Ser-GCT-23:A_DSLE_TLE_Z tRNA-Ser-GCT-22:A_DSLE_TLE_Z tRNA-Ser-GCT-20:A_DSLE tRNA-Ser-GCT-34:A_DSLE_TLE_Z tRNA-Ser-GCT-36:A_DSLE_TLE_Z tRNA-Ser-GCT-37:A_DSLE tRNA-Ser-GCT-30:A_DSLE tRNA-Ser-GCT-32:A_DSLE tRNA-Ser-GCT-33:A_DSLE tRNA-Ser-GCT-15:TLE_Z tRNA-Ser-GCT-13:A_DSLE tRNA-Ser-GCT-10:TLE_Z tRNA-Ser-GCT-16:A_DSLE_TLE_Z tRNA-Ser-GCT-17:A_DSLE_TLE_Z tRNA-Ser-GCT-11:A_DSLE tRNA-Ser-GCT-18:A_DSLE tRNA-Ser-GCT-19:A_DSLE Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-GCT-1 -GGCGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [1] tRNA-Ser-GCT-2 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [2] tRNA-Ser-GCT-4 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCAAAUCCCAUCCUCGUCGCCA [3] tRNA-Ser-GCT-5 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUUGUCGCCA [4] tRNA-Ser-GCT-6 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [5] tRNA-Ser-GCT-7 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCGUCCUCGUCGCCA [6] tRNA-Ser-GCT-8 -GACAAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [7] tRNA-Ser-GCT-9 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUUGAAUCCCAUCCUCGUCGCCA [8] tRNA-Ser-GCT-10 -GACGAGGUGGCCAAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [9] tRNA-Ser-GCT-11 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUUGUCGCCA [10] tRNA-Ser-GCT-12 -GACGAGGUUGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [11] tRNA-Ser-GCT-13 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUUCCAUCCUCGUCGCCA [12] tRNA-Ser-GCT-14 -GACGUGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [13] tRNA-Ser-GCT-15 -GGCGAGGUGGCCGAGU--GGUU-AAGGCGAUGGGCUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [14] tRNA-Ser-GCT-16 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CAUGGGUUCGAAUCCCAUCCUCGUCGCCA [15] tRNA-Ser-GCT-17 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCUAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [16] tRNA-Ser-GCT-18 -GACGAGGUGGCCGAGU--GGUU-AAGGCAAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUUGUCGCCA [17] tRNA-Ser-GCT-19 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCAUCGCCA [18] tRNA-Ser-GCT-20 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUUGAAUCCCAUCCUUGUCGCCA [19] tRNA-Ser-GCT-22 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-A-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [20] tRNA-Ser-GCT-23 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUUGAAUCCCAUCCUCGUCGCCA [21] tRNA-Ser-GCT-24 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [22] tRNA-Ser-GCT-25 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUUGAGCGUGGGUUCGAAUCCCAUCCUCGUCGCCA [23] tRNA-Ser-GCT-26 -GACGAGGUUGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCCAAUCCCAUCCUCGUCGCCA [24] tRNA-Ser-GCT-27 -AACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCCAAUCCCAUCCUCGUCGCCA [25] tRNA-Ser-GCT-28 -GACGAGGUGGCCGAGG--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCCAAUCCCAUCCUCGUCGCCA [26] tRNA-Ser-GCT-29 -GACGAGGUGGCCGAGU--GCUU-AAGGCGAUGGACUGCUAAUCCGUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [27] tRNA-Ser-GCT-30 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-UGUGGCUUUGAAUCCCAUCCUUGUCGCCA [28] tRNA-Ser-GCT-32 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-UGUGGGUUCCAAUCCCAUCCUCAUCGCCA [29] tRNA-Ser-GCT-33 -GACGAGGUGGCCGAGU--GGUU-AAGAUGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCAAAUCUCAUCCUUGUCGCCA [30] tRNA-Ser-GCT-34 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUUAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [31] tRNA-Ser-GCT-35 -GACAAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUUAUUCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [32] tRNA-Ser-GCT-36 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-CGUGGGUUCGAAUCCCAUCCUCGUCGCCA [33] tRNA-Ser-GCT-37 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUUGAGCGUGGGGUCGAAUCCCAUCCUUGUCGCCA [34] tRNA-Ser-GCT-41 -GAUGAAGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUAAUCCAUU-G-UGUGGGUUCGUAUCCCAUCCUCGUCGCCA [35] tRNA-Ser-GCT-43 -GACGUGGUGGCCGAGU--GGUU-AAGGCGAUGGACUGCUUAUCCAUU-G-CUUGGGUUCGAAUCCCAUCCUCGUCGCCA [36] tRNA-Ser-GCT-46 -GAUGAAGUGGCCGAGU--GGUU-AAGGCAAUGGACUGCUAAUCCAUU-G-UGUGGGUUCGUAUCCCAUCCUCGUCGCCA [37] tRNA-Ser-GCT-47 -GACGAGGUGGCCGAGU--GGUU-AAGGCGAUGGACAGCUAAUCCAGU-G-UGUGGGUUUGAAUCCCAUCCUUGUCGCCA [38] 5007 .GACGAGGUGGCCGAGU--GGUU-AAG..................................................... [2,3,4,5,6,8,10,12,15,16,17,18,19,20,21,22,23,28,29,30,31,33,34,38] 3010 ..............................................................AUCCCAUCCUCGUCGCCA [1,2,3,5,7,8,9,11,13,14,15,16,20,21,22,23,24,25,26,27,31,32,33,35,36,37] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 5: 3001,5016 Fragment Coverage tRNA-Gln-TTG-8:TE_Z tRNA-Gln-TTG-3:A_DSLE_TE_Z tRNA-Gln-TTG-1:A_DSLE_TE_Z tRNA-Gln-TTG-2:TE_Z tRNA-Gln-CTG-6:A_DSLE tRNA-Gln-TTG-6:TE_Z tRNA-Gln-TTG-7:TE_Z tRNA-Gln-TTG-4:A_DSLE tRNA-Gln-TTG-5:A_DSLE tRNA-Gln-CTG-5:TE_Z tRNA-Gln-CTG-4:A_DSLE tRNA-Gln-CTG-7:TE_Z tRNA-Gln-CTG-1:A_DSLE tRNA-Gln-CTG-3:A_DSLE_TE_Z tRNA-Gln-CTG-2:A_DSLE_TE_Z Fragment Aminos Gln Fragment Alignment # STOCKHOLM 1.0 tRNA-Gln-CTG-1 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGGACCUCCA [1] tRNA-Gln-CTG-2 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGAACCUCCA [2] tRNA-Gln-CTG-3 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-ACCGAGUUCAAAUCUCGGUGGAACCUCCA [3] tRNA-Gln-CTG-4 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGAACUUCCA [4] tRNA-Gln-CTG-5 -UGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGAACCUCCA [5] tRNA-Gln-CTG-6 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGUUGGAACCUCCA [6] tRNA-Gln-CTG-7 -GGUUACAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGAACCUCCA [7] tRNA-Gln-TTG-1 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGAACCUCCA [8] tRNA-Gln-TTG-2 -GGUUCCAUGGUGUAAC--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGAACCUCCA [9] tRNA-Gln-TTG-3 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAGUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGAACCUCCA [10] tRNA-Gln-TTG-4 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCGAGUUCAAAUCUCAGUGGAACCUCCA [11] tRNA-Gln-TTG-5 -GGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGAUGGAACCUCCA [12] tRNA-Gln-TTG-6 -GUUUCUAUGGUGUAAU--GGUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGAACCUCCA [13] tRNA-Gln-TTG-7 -GGUUCCAUGGUGUAAC--GGUU-AGCACUCUGGGCUUUGAAUCCAGCGA-UCUGAGUUCAAAUCUCGGUGGAACCUCCA [14] tRNA-Gln-TTG-8 -GGUUCCACGGUGUAAU--GCUU-AGCACUCUGGACUUUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGAACCUCCA [15] 5016 .GGUUCCAUGGUGUAAU--GGUU-AGC..................................................... [1,2,3,4,6,8,10,11,12] 3001 ................................................................CUCGGUGGAACCUCCA [2,3,5,7,8,9,10,13,14,15] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 6: 3014,5005,5004 Fragment Coverage tRNA-Tyr-GTA-22:TE_Z tRNA-Tyr-GTA-8:TE_Z tRNA-Tyr-GTA-21:TE_Z tRNA-Tyr-GTA-29:TE_Z tRNA-Tyr-GTA-16:A_DSLE_CSL_TE_Z tRNA-Tyr-GTA-14:A_DSLE_CSL tRNA-Tyr-GTA-13:A_DSLE_CSL_TE_Z tRNA-Tyr-GTA-11:A_DSLE_CSL tRNA-Tyr-GTA-10:A_DSLE_CSL_TE_Z tRX-Tyr-NNN-2:A_DSLE_CSL_TE_Z tRNA-Tyr-GTA-7:TE_Z tRNA-Tyr-GTA-31:A_DSLE_CSL tRNA-Tyr-GTA-15:TE_Z tRNA-Tyr-GTA-27:A_DSLE_CSL_TE_Z tRNA-Tyr-GTA-24:A_DSLE_CSL_TE_Z tRNA-Tyr-GTA-23:TE_Z tRNA-Tyr-GTA-20:TE_Z tRNA-Tyr-GTA-28:TE_Z tRNA-Tyr-GTA-5:A_DSLE_CSL tRNA-Tyr-GTA-4:A_DSLE_CSL tRNA-Tyr-GTA-3:A_DSLE_CSL_TE_Z tRNA-Tyr-GTA-2:A_DSLE_CSL_TE_Z tRNA-Tyr-GTA-1:A_DSLE_CSL_TE_Z Fragment Aminos Tyr Fragment Alignment # STOCKHOLM 1.0 tRNA-Tyr-GTA-1 -CCUUCGAUAGCUCAGUU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGACUCCGGCUCGAAGGACCA [1] tRNA-Tyr-GTA-2 -CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGACCA [2] tRNA-Tyr-GTA-3 -CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCAAUUCCGGCUCGAAGGACCA [3] tRNA-Tyr-GTA-4 -CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAUUCCAGCUCGAAGGACCA [4] tRNA-Tyr-GTA-5 -CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCACUGGUUCGAUUCCGGUUCGAAGGACCA [5] tRNA-Tyr-GTA-7 -CCUUCGAUAGCUCAGCU-GGU--AGAGUGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGACCA [6] tRNA-Tyr-GTA-8 -CCUUCGAUAGCUCAGCC-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGACCA [7] tRNA-Tyr-GTA-10 -CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUUGCUGGUUCAAUUCCGGCUCGAAGGACCA [8] tRNA-Tyr-GTA-11 -CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCAAUUCUGGCUCGAAGGACCA [9] tRNA-Tyr-GTA-13 -CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGACCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGACCA [10] tRNA-Tyr-GTA-14 -CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGUAGGACCA [11] tRNA-Tyr-GTA-15 -CCUUCCAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCAAUUCCGGCUCGAAGGACCA [12] tRNA-Tyr-GTA-16 -CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCGCUUGUUCAAUUCCGGCUCGAAGGACCA [13] tRNA-Tyr-GTA-20 -CCUUCGAUAGCUCAGCU-GGG--AGAGUGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCGAUUCCGGCUCGAAGGACCA [14] tRNA-Tyr-GTA-21 -CCUUCGAUAGCUCAGCC-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCUCUGGUUCGAUUCCGGCUCGAAGGACCA [15] tRNA-Tyr-GTA-22 -CCUUCCAUAGCUCAGCU-GGU--AGAGUGGAGGACUGUAGAUCCUUAGGUCGCUGGUUCAAUUCCGGCUCGAAGGACCA [16] tRNA-Tyr-GTA-23 -CCUUCCAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUUGCUGGUUCAAUUCCGGCUCGAAGGACCA [17] tRNA-Tyr-GTA-24 -CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAACCUUAGGUCGCUGGUUUGAUUCCGGCUCGAAGGACCA [18] tRNA-Tyr-GTA-27 -CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAUCGUUAAGUCGCUGGUUCAAUUCCGGCUCGAAGGACCA [19] tRNA-Tyr-GTA-28 -CCUUCCAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAUCCUUAGGUCGCUAGUUCAAUUCCGGCUCGAAGGACCA [20] tRNA-Tyr-GTA-29 -CCUUCGAUAGCUCAGCU-GGU--AGAGUGGAGGACUGUAGAUCUUUAGGUUGCUGGUUCAAUUCCGGCUCGAAGGACCA [21] tRNA-Tyr-GTA-31 -CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGGUACUUAGGUUGCUGGUUCGAUUCCAGCUCGAAGGACCA [22] tRX-Tyr-NNN-2 -CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACUGUAGAUUGGUAAGUCGCUGGUUCAAUUCCGGCUCGAAGGACCA [23] 5005 .CCUUCGAUAGCUCAGUU-GGU--AGAGCGGAGGACU........................................... [1] 5004 .CCUUCGAUAGCUCAGCU-GGU--AGAGCGGAGGACU........................................... [2,3,4,5,8,9,10,11,13,18,19,22,23] 3014 ...............................................................UCCGGCUCGAAGGACCA [1,2,3,6,7,8,10,12,13,14,15,16,17,18,19,20,21,23] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 7: 5010,5009 Fragment Coverage tRNA-Gly-GCC-13:A_DSLE tRNA-Gly-GCC-12:A_DSLE tRNA-Gly-GCC-10:A_DSLE tRNA-Gly-TCC-1:A_DSL tRNA-Gly-GCC-15:A_DSLE tRNA-Gly-GCC-14:A_DSLE tRNA-Gly-GCC-2:A_DSLE tRNA-Gly-GCC-4:A_DSLE tRNA-Gly-GCC-3:A_DSLE tRNA-Gly-GCC-1:A_DSLE tRNA-Gly-GCC-7:A_DSL tRNA-Gly-GCC-6:A_DSLE tRNA-Gly-GCC-9:A_DSLE tRNA-Gly-GCC-8:A_DSLE Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-GCC-1 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCA [1] tRNA-Gly-GCC-2 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGUGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCA [2] tRNA-Gly-GCC-3 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGGGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCA [3] tRNA-Gly-GCC-4 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCAAUUCCCGGCCAAUGCACCA [4] tRNA-Gly-GCC-6 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGCGG-CCUGGGUUCGAUUCCCGGCCAAUGCACCA [5] tRNA-Gly-GCC-7 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCACCUGCCAUGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCA [6] tRNA-Gly-GCC-8 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCACCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCA [7] tRNA-Gly-GCC-9 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCAGCCAAUGCACCA [8] tRNA-Gly-GCC-10 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUUCCGGCCAAUGCACCA [9] tRNA-Gly-GCC-12 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGGCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCA [10] tRNA-Gly-GCC-13 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCUGCCAAUGCACCA [11] tRNA-Gly-GCC-14 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGGGG-CCCGGAUUCGAUUCCCGGCCAAUGCACCA [12] tRNA-Gly-GCC-15 -GCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCUGGGUUCGAUUCCUGGCCAAUGCACCA [13] tRNA-Gly-TCC-1 -GCAUUGGUGGUUCAGU--GGU--CGAAUUCUCGCCUUCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCA [14] 5010 .GCAUUGGUGGUUCAGU--GGU.......................................................... [1,2,3,4,5,6,9,11,12,14] 5009 .GCAUUGGUGGUUCAGU--GGU--AGA..................................................... [1,2,3,4,5,7,8,9,10,11,12,13] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 8: 5003 Fragment Coverage tRNA-iMet-CAT-13:A_DSL tRNA-iMet-CAT-10:A_DSL tRNA-iMet-CAT-11:A_DSL tRNA-iMet-CAT-8:A_DSL tRNA-iMet-CAT-9:A_DSL tRNA-iMet-CAT-1:A_DSL tRNA-iMet-CAT-3:A_DSL tRNA-iMet-CAT-6:A_DSL Fragment Aminos iMet Fragment Alignment # STOCKHOLM 1.0 tRNA-iMet-CAT-1 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUACCA [1] tRNA-iMet-CAT-3 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUCAAUGGAUCGAAACCAUCCUCUGCUACCA [2] tRNA-iMet-CAT-6 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCUUCUGCUACCA [3] tRNA-iMet-CAT-8 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCAAAACCAUUCUCUGCUACCA [4] tRNA-iMet-CAT-9 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGUUCGAAACCAUCCUCUGCUACCA [5] tRNA-iMet-CAT-10 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUACUACCA [6] tRNA-iMet-CAT-11 -AGCAGAGUGGCGCAGC--GGA--AGCGUGCUGGGCCCAUAACACAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUACCA [7] tRNA-iMet-CAT-13 -AGCAGAGUGGCGCAGC--GGA--AGCGUGUUGGGCCCAUAACCCAGAGGUCGAUGGAUUGAAACCAUCCUCUGCUACCA [8] 5003 .AGCAGAGUGGCGCAGC--G............................................................ [1,2,3,4,5,6,7,8] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 9: 5006 Fragment Coverage tRNA-Arg-TCG-8:A_DSL tRNA-Arg-TCG-6:A_DSL tRNA-Arg-TCG-4:A_DSL Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-TCG-4 -GACCGCGUGGCCUAAU--GGAU-AAGGCGUCUGACUUCGGAUCAGAAGAUUGAGGGUUCGAGUCCCUUCGUGGUCGCCA [1] tRNA-Arg-TCG-6 -GACCGCGUGGCCUAAU--GGAU-AAGGCGUCUGACUUCGGAACAGAAGAUUGAGGGUUCGAGUCCCUUCGUGGUCGCCA [2] tRNA-Arg-TCG-8 -GACCGCGUGGCCUAAU--GGAU-AAGACGUCUGACUUCGGAUCAGAAGAUUGAGGGUUCGAGUCCCUUCGUGGUCGCCA [3] 5006 .GACCGCGUGGCCUAAU--GG........................................................... [1,2,3] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 10: 5011 Fragment Coverage tRNA-Lys-CTT-13:A_DSLE_CS tRNA-Lys-CTT-15:A_DSLE_CS tRNA-Lys-CTT-17:A_DSLE_CS tRNA-Lys-CTT-14:A_DSLE_CS tRNA-Lys-CTT-1:A_DSLE_CS tRNA-Lys-CTT-5:A_DSLE_CS tRNA-Lys-CTT-9:A_DSLE_CS Fragment Aminos Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Lys-CTT-1 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGCCA [1] tRNA-Lys-CTT-5 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCAAGCCCCACGUUGGGCGCCA [2] tRNA-Lys-CTT-9 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCAUGGGUUCGAGCCCCACGUUGGGCGCCA [3] tRNA-Lys-CTT-13 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGCUCGAGCCCCACGUUGGGCGCCA [4] tRNA-Lys-CTT-14 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCACACGUUGGGCGCCA [5] tRNA-Lys-CTT-15 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUAGGUUCGAGCCCCACGUUGGGCGCCA [6] tRNA-Lys-CTT-17 -GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUCGGCGCCA [7] 5011 .GCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGA............................................. [1,2,3,4,5,6,7] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 11: 5012 Fragment Coverage tRNA-His-GTG-7:A_DSLE tRNA-His-GTG-8:A_DSLE tRNA-His-GTG-9:A_DSLE tRNA-His-GTG-1:A_DSLE tRNA-His-GTG-3:A_DSLE tRNA-His-GTG-4:A_DSLE tRNA-His-GTG-5:A_DSLE tRNA-His-GTG-6:A_DSLE tRNA-His-GTG-12:A_DSLE tRNA-His-GTG-13:A_DSLE tRNA-His-GTG-11:A_DSLE Fragment Aminos His Fragment Alignment # STOCKHOLM 1.0 tRNA-His-GTG-1 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCCCGGUUCGAAUCCGGGUCACGGCACCA [1] tRNA-His-GTG-3 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCUCGGUUCGAAUCCGAGUCACGGCACCA [2] tRNA-His-GTG-4 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCCCGGUUCAAAUCCGGGUCACGGCACCA [3] tRNA-His-GTG-5 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCCUGGUUCGAAUCCGGGUCACGGCACCA [4] tRNA-His-GTG-6 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCUGCAGCAA-CCCCGGUUCGAAUCCGGGUCACGGCACCA [5] tRNA-His-GTG-7 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGUGUUGUGGCCGCAGCAA-CCCCGGUUCGAAUCCGGGUCACGGCACCA [6] tRNA-His-GTG-8 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCCCGGUUUGAAUCCGGGUCACGGCACCA [7] tRNA-His-GTG-9 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCCCGGUUCGAAUCCGGGUCACUGCACCA [8] tRNA-His-GTG-11 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCCCGGUUCGAAUCCGAGUCACGGCACCA [9] tRNA-His-GTG-12 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGCGUUGUGGCCGCAGCAA-CCACGGUUCGAAUCCGCGUCACGGCACCA [10] tRNA-His-GTG-13 GGCCGUGAUCGUAUAGU--GGUU-AGUACUCUGAGUUGUGGCCGCAGCAA-CCCCGGUUCGAAUCCGGGUCACGGCACCA [11] 5012 .GCCGUGAUCGUAUAGU--GGUU-AG...................................................... [1,2,3,4,5,6,7,8,9,10,11] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 12: 5013 Fragment Coverage tRNA-Gly-TCC-11:A_DSL tRNA-Gly-TCC-7:A_DSL tRNA-Gly-TCC-2:A_DSL tRNA-Arg-TCG-10:A_DSL tRNA-Gly-TCC-8:A_DSL tRNA-Gly-TCC-9:A_DSL tRNA-Gly-TCC-17:A_DSL tRNA-Gly-TCC-14:A_DSL tRNA-Gly-TCC-12:A_DSL tRNA-Gly-TCC-13:A_DSL tRNA-Gly-TCC-10:A_DSL tRNA-Gly-TCC-19:A_DSL tRNA-Gly-TCC-4:A_DSL tRNA-Gly-TCC-5:A_DSL Fragment Aminos Gly,Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-TCG-10 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAACUGCUUUCGAAGCAGUUGA-CCCGGGUUCGAUUCCCGGCCAACG..CACCA [1] tRNA-Gly-TCC-2 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCGGCCAACG..CACCA [2] tRNA-Gly-TCC-4 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCGGCCAAUG..CACCA [3] tRNA-Gly-TCC-5 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUUGAUUCCCGGCCAACG..CACCA [4] tRNA-Gly-TCC-7 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCGGCCAACA..CACCA [5] tRNA-Gly-TCC-8 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCAGCCAACG..CACCA [6] tRNA-Gly-TCC-9 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUAGAUUCCCGGCCAACG..CACCA [7] tRNA-Gly-TCC-10 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCCAUUCCCGGCCAACG..CACCA [8] tRNA-Gly-TCC-11 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCGGGCAACG..CACCA [9] tRNA-Gly-TCC-12 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCUUUCCAAGCAGUUGA-CCCGGGUUCGAUUCCCGGGCAACG..CACCA [10] tRNA-Gly-TCC-13 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGCGUUCGAUUCCCGGCCAACG..CACCA [11] tRNA-Gly-TCC-14 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCAAUUCCCAGCCAACG..CACCA [12] tRNA-Gly-TCC-17 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CUCGGGUUCCAUUCCCGGCCAACG..CACCA [13] tRNA-Gly-TCC-19 -GCGUUGGUGGUAUAGU--GGUG-AGCAUAGCUGCCUUCCAAGCAGUUGA-CCCGGGUUCGAUUACCGGCCAACGgaCACCA [14] 5013 .GCGUUGGUGGUAUAGU--GGUG-A......................................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))..):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++===========..=++++ // Fragment Cluster 13: 3006,5014 Fragment Coverage tRNA-Ala-TGC-2:A_DSLE tRNA-Ala-TGC-1:A_DSLE tRNA-Ala-TGC-6:A_DSLE tRNA-Ala-TGC-7:A_DSLE tRNA-Ala-TGC-4:A_DSLE tRNA-Ala-TGC-9:A_DSLE tRNA-Ala-CGC-1:A_DSLE tRNA-Ala-CGC-3:A_DSLE tRNA-Ala-CGC-2:A_DSLE tRNA-Ala-CGC-5:A_DSLE tRNA-Ala-CGC-7:A_DSLE tRNA-Glu-TTC-17:A_DSLE tRNA-Glu-TTC-16:A_DSLE tRNA-Ala-CGC-16:A_DSLE tRNA-Ala-CGC-8:A_DSLE tRNA-Ala-TGC-10:A_DSLE tRNA-Ala-TGC-11:A_DSLE tRNA-Ala-TGC-12:A_DSLE tRNA-Ala-TGC-13:A_DSLE tRNA-Ala-TGC-15:A_DSLE tRNA-Ala-TGC-16:A_DSLE tRNA-Ala-TGC-17:A_DSLE tRNA-Ala-CGC-11:A_DSLE tRNA-Ala-CGC-10:A_DSLE Fragment Aminos Glu,Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-CGC-1 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUCGCAUGUAUGAGGCCCCGGGUUCGAUCCCCGGCAUCUCCACCA [1] tRNA-Ala-CGC-2 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUCGCAUGUAUGAGGCCCCGGGUUCAAUCCCCGGCAUCUCCACCA [2] tRNA-Ala-CGC-3 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCACGCUUCGCAUGUGUGAGGCCCCGGGUUCAAUCCCCGGCAUCUCCACCA [3] tRNA-Ala-CGC-5 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUCGCAUGUAUGAGGUCCUGGGUUCAACCCCCAGCAUCUCCACCA [4] tRNA-Ala-CGC-7 -GGGGAUGUAGCUCAGU--GGU--AGAGUGCAUGCUUCGCAUGUAUGAGGCCCCGGGUUCAACCCCCGGCAUCUCCACCA [5] tRNA-Ala-CGC-8 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUCGCAUGUAUGGGGCCCCGGGUUCAAUCCCCGGCAUCUCCACCA [6] tRNA-Ala-CGC-10 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUCGCAUAUAUGAGGCCCCGGGUUCAAUCCCCGGCAUCUCCACCA [7] tRNA-Ala-CGC-11 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUCGCAUGUAUGAGGCCCCGGGUUCAAUCCCCGGCAUCUACACCA [8] tRNA-Ala-CGC-16 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUCGCAUGUAUGAGGCCCCGGGUUCAAUCUCCAGCAUCUCCACCA [9] tRNA-Ala-TGC-1 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGCCCCGGGUUCAAUCCCCGGCAUCUCCACCA [10] tRNA-Ala-TGC-2 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGGUUCAAUCCCCAGCAUCUCCACCA [11] tRNA-Ala-TGC-4 -GGGGAUGUAGCUCAGU--GGU--AGAGCACAUGCUUUGCAUGUAUGAGGUCUUGGGUUCAAUCCCCAGCAUCUCCACCA [12] tRNA-Ala-TGC-6 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUUUUGGGUUCAAUCCCCAGCAUCUCCACCA [13] tRNA-Ala-TGC-7 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGGUUCAAUCCCCAGCAUUUCCACCA [14] tRNA-Ala-TGC-9 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCGUUGCAUGUAUGAGGCCCCGGGUUCAAUCCCCGGCAUCUCCACCA [15] tRNA-Ala-TGC-10 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUAGGUUCAAUCCCCAGCAUCUCCACCA [16] tRNA-Ala-TGC-11 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGCCCCGGGUUCAAUCCCCAGCGUCUCCACCA [17] tRNA-Ala-TGC-12 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGCCCUGGGUUCAAUCCCCGGCAACUCCACCA [18] tRNA-Ala-TGC-13 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGGUUCAAUCACCAGCAUCUCCACCA [19] tRNA-Ala-TGC-15 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUUUUGGGUUCAAUCACCAGCAUCUCCACCA [20] tRNA-Ala-TGC-16 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCGUGUAUGAGGACCCGGGUUCAAUCCCCGCCAUCUCCCCCA [21] tRNA-Ala-TGC-17 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCGUUGCGUGUAUGAGGCCCCGGGUACAAUCCCCGCCAUCUCCCCCA [22] tRNA-Glu-TTC-16 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGUUUUUCAUGUAUGAGGCCCCGGGUUCAAUCCCCGGCAUCUCCACCA [23] tRNA-Glu-TTC-17 -GGGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUUCAUGUAUGAGGCCCUGGGUUCAAUCCCCGGCAUCUCCACCA [24] 5014 .GGGGAUGUAGCUCAGU--GGU--AGA..................................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24] 3006 ..............................................................UCCCCGGCAUCUCCACCA [1,2,3,6,7,10,15,23,24] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 14: 5017 Fragment Coverage tRNA-Val-TAC-3:A_DSL tRNA-Val-TAC-20:A_DSL tRNA-Val-TAC-21:A_DSL tRNA-Val-TAC-8:A_DSL tRNA-Val-TAC-11:A_DSL tRNA-Val-TAC-13:A_DSL tRNA-Val-TAC-12:A_DSL tRNA-Val-TAC-14:A_DSL tRNA-Val-TAC-17:A_DSL tRNA-Val-TAC-19:A_DSL tRNA-Ile-TAT-15:A_DSL tRNA-Val-TAC-7:A_DSL tRNA-Val-TAC-6:A_DSL tRNA-Val-TAC-5:A_DSL tRNA-Val-TAC-4:A_DSL tRNA-Val-TAC-9:A_DSL Fragment Aminos Ile,Val Fragment Mismatches U:3:G:1 U:4:G:1 G:2:U:1 Fragment Alignment # STOCKHOLM 1.0 tRNA-Ile-TAT-15 -GGUUU..CAUAGUGUAGU--GGUC-AUCAUGUCUGCUUUAUACGCCGAAGGCCCUGGGUUCAUUCCCCAGUGAAAGCACCA [1] tRNA-Val-TAC-3 -GGUUU..CAUAGUGUAGU--GGUU-AUCACGUCUGCUUUACACGCAGAAGGUCCUGGGUUCGAUCCCCAGUGAAACCACCA [2] tRNA-Val-TAC-4 -GGUUU..CAUAGUGUAGU--GGUU-AUCACGUCUGCUUUACACGCAGAAGGUCCUGGGUUCGAGCCCCAGUGAAACCACCA [3] tRNA-Val-TAC-5 -GGUUU..CAUAGUGUAGU--GGUU-AUCACAUCUGCUUUACACGCAGAAGGUCCUGGGUUCAAUCCCCAGUGAAACCACCA [4] tRNA-Val-TAC-6 -GGUUU..CAUAGUGUAGU--GGCU-AUCACGUCUGCUUUACACGCAGAAGGUCCUGGGUUCAAUCCCCAGUGAAACCACCA [5] tRNA-Val-TAC-7 -GGUUU..CAUAGUGUAGU--GGUC-AUCACGUCUGCUUUACACGCAGAAGGUCCUGGGUUCAAUCCCCAGUGAAACCACCA [6] tRNA-Val-TAC-8 -GGUUU..CAUAGUGUAGC--GGUU-AUCACGUCUGCUUUACACGCAGAAGGUCCUGGGUUCAAUCCCCAGUGAAACCACCA [7] tRNA-Val-TAC-9 -GGUUU..CAUAGUGUAGU--GGUC-AUCACAUCUGCUUUACACGCAGAAGGUCCUGGGUUCAAUCCCCAGUGAAACCACCA [8] tRNA-Val-TAC-11 -GGUUU..CAUAGUGUAGU--GGUU-AUCACGUCUGCUUUACACGCAGAAGGUCCUGGGUUCAAUCCCCAGUGAAACCCCCA [9] tRNA-Val-TAC-12 -GGUUU..CAUAGUGUAGU--GGUC-UUCACGUCUGCUUUACACGCAGAAGGUCCUGGGUUCAAUCCCCAGUGAAACCACCA [10] tRNA-Val-TAC-13 -GGUUU..CAUAGUGUAGU--GGUC-AUCACAUCUGCUUUACACGCAGAAGGUCCUGGGUUCAAUCCCCAGUGAAGCCACCA [11] tRNA-Val-TAC-14 -GGUUU..CAUAGUGUAGU--GGUC-AUCACGUCUGCUUUACACGCAGAAGGUCCUGGGUUCAUUCCCCAGUGAAACCACCA [12] tRNA-Val-TAC-17 -GUGGUuuCAUAGUGUAGU--GGUC-AUCACGUCUGCUUUACACGCAGAUGGUCCUGGGUUCAAUCCCCAGUGACCCCACCA [13] tRNA-Val-TAC-19 -GGUUU..CAUAGUGUAGU--GUUC-AUCACGUCUGCUUUACACGCAGAACGUCCUCGGUUCAAUCCCUAGUGAAACCACCA [14] tRNA-Val-TAC-20 -GGUUU..CAUAGUGUAUU--GGUC-AACAUGUCUUCUUUACAUGCAGAAGGUCCUGGGUUCAAUCCCCAGUGAAACCACCA [15] tRNA-Val-TAC-21 -GGUUU..CAUAGUGUAGU--GGCU-AUCACGUCUGCUUUACACACAGUAGGGCAUGGGUUCAAUCCCCAGUGAAACCACCA [16] 5017 .GGUUU..CAUAGUGUA................................................................. [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16] #=GC SS_cons :(((((..((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=====..==++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 15: 5018 Fragment Coverage tRNA-Ser-AGA-1:A_DSL tRNA-Ser-AGA-7:A_DSL tRNA-Ser-TGA-6:A_DSL tRNA-Ser-TGA-4:A_DSL tRNA-Ser-AGA-4:A_DSL tRNA-Ser-TGA-2:A_DSL tRNA-Ser-TGA-3:A_DSL tRNA-Ser-TGA-1:A_DSL tRNA-Ser-AGA-3:A_DSL tRNA-Ser-TGA-9:A_DSL tRNA-Ser-AGA-8:A_DSL tRNA-Ser-AGA-6:A_DSL tRNA-Ser-AGA-2:A_DSL tRNA-Ser-AGA-12:A_DSL tRNA-Ser-AGA-11:A_DSL tRNA-Ser-AGA-10:A_DSL Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-AGA-1 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [1] tRNA-Ser-AGA-2 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [2] tRNA-Ser-AGA-3 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCAAAUCCUGCCGACUACGCCA [3] tRNA-Ser-AGA-4 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCUGACUACGCCA [4] tRNA-Ser-AGA-6 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [5] tRNA-Ser-AGA-7 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUACUGCCGACUACGCCA [6] tRNA-Ser-AGA-8 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAUUCCUGCCGACUACGCCA [7] tRNA-Ser-AGA-10 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUUGG-CGCAGGUUCGAAUCCUGCCGACUACGCCA [8] tRNA-Ser-AGA-11 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCAAUU-G-CGCAGGUUUGAAUCCUGCCGACUACGCCA [9] tRNA-Ser-AGA-12 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUUGAGCUUAGUUUUGAGUCCUGUCGACUACUCCA [10] tRNA-Ser-TGA-1 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [11] tRNA-Ser-TGA-2 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUCAAAUCCUGCCGACUACGCCA [12] tRNA-Ser-TGA-3 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGCCA [13] tRNA-Ser-TGA-4 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-A-CGCAGGUUCGAAUCCUGCCGACUACGCCA [14] tRNA-Ser-TGA-6 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUUGG-CGCAGGUUCGAAUCCUGCCGACUACGCCA [15] tRNA-Ser-TGA-9 -GUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUUGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUUUGCCA [16] 5018 .GUAGUCGUGGCCGAGU--GG........................................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 16: 5019 Fragment Coverage tRNA-Leu-CAG-6:A_DSL tRNA-Leu-CAG-1:A_DSL tRNA-Leu-CAG-3:A_DSL tRNA-Leu-CAG-2:A_DSL tRNA-Leu-CAG-8:A_DSL tRNA-Leu-CAG-10:A_DSL tRNA-Leu-CAA-8:A_DSL tRNA-Leu-CAA-5:A_DSL tRNA-Leu-CAA-6:A_DSL tRNA-Leu-CAG-4:A_DSL tRNA-Leu-CAA-4:A_DSL tRNA-Leu-CAA-7:A_DSL tRNA-Leu-CAA-3:A_DSL tRNA-Leu-CAA-2:A_DSL tRNA-Leu-CAA-1:A_DSL Fragment Aminos Leu Fragment Alignment # STOCKHOLM 1.0 tRNA-Leu-CAA-1 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G...................-CGUGGGUUCGAAUCCCACUUCUGACACCA [1] tRNA-Leu-CAA-2 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G...................-CGUGGGUUCAAAUCCCACUUCUGACACCA [2] tRNA-Leu-CAA-3 -GUCAGGAUGGCCGAGC--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G...................-CGUGGGUUCAAAUCCCACUUCUGACACCA [3] tRNA-Leu-CAA-4 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G...................-CGUGGGUUCAAAUCCCACUUCUGACACCA [4] tRNA-Leu-CAA-5 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G...................-CGUGGGUUCAAAUCCCACUUCUGACACCA [5] tRNA-Leu-CAA-6 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-G...................-CGUGGGUUCAAAUCCUACUUCUGACACCA [6] tRNA-Leu-CAA-7 -GUCAGGAUGGCCGAGU--GGUCUGAGGCGCCAGACUCAAGUUCUGGU-G...................-CAUGGGUUCAAAUCCCACUUCUGACACCA [7] tRNA-Leu-CAA-8 -GUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGUUCUGGU-GcguggguucgaaucccacuGCGUGGGUUCGAAUCCCACUUCUGACACCA [8] tRNA-Leu-CAG-1 -GUCAGGAUGGCCGAGC--GGUCUAAGGCGCUGCGUUCAGGUCGCAGU-G...................-CGUGGGUUCGAAUCCCACUUCUGACACCA [9] tRNA-Leu-CAG-2 -GUCAGGAUGGCCGAGC--GGUCUAAGGCGCUGCGUUCAGGUCGCAGU-G...................-CGUGGGUUCGAAUCCCACUUCUGACACCA [10] tRNA-Leu-CAG-3 -GUCAGGAUGGCCGAGC--GGUCUAAGGCGCUGCGUUCAGGUCGCAGU-G...................-CGUGGGUUCAAAUCCCACUUCUGACACCA [11] tRNA-Leu-CAG-4 -GUCAGGAUGGCCGAGC--GGUCUAAGUCGCUGCGUUCAGGUCGCAGU-G...................-CGUGGGUUCGAAUCCCACUUCUGACACCA [12] tRNA-Leu-CAG-6 -GUCAGGAUGGCCGAGC--GGUCUAAGGCGCUGCGUUCAGGUCGCAGU-G...................-CUUGGGUUCGAAUCCCACUUCUGACACCA [13] tRNA-Leu-CAG-8 -GUCAGGAUGGCCGAGC--GGUCUAAGGCGCUGCGUCCAGGUCGCAGU-G...................-CGAGGGUUCGAAUCCCACUUCUGACACCA [14] tRNA-Leu-CAG-10 -GUCAGGAUGGCCGAGC--AGUCUAAGGCGCUGCGUUCAGGUCACAGU-G...................-CGUUGGUUCAAAUCCCACUUCUGACACCA [15] 5019 .GUCAGGAUGGCCGA.................................................................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,...................,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++...................++=====+++++++============++++ // Fragment Cluster 17: 3003 Fragment Coverage tRNA-Val-CAC-12:TE_Z Fragment Aminos Val Fragment Alignment # STOCKHOLM 1.0 tRNA-Val-CAC-12 -GUUUCUGUAGUAUAGU--GGUU-AUCACGUUCGCCUCACACGCGAAAGGUCCCCGGUUCGAAACCAGGCAGAAACACCA [1] 3003 ................................................................CCAGGCAGAAACACCA [1] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 18: 3004 Fragment Coverage tRNA-Pro-CGG-2:TLE_Z tRNA-Pro-CGG-7:TLE_Z tRNA-Pro-TGG-2:TLE_Z tRNA-Pro-AGG-1:TLE_Z tRNA-Pro-TGG-1:TLE_Z tRNA-Pro-CGG-10:TLE_Z tRNA-Pro-AGG-15:TLE_Z tRNA-Pro-AGG-6:TLE_Z tRNA-Pro-AGG-3:TLE_Z tRNA-Pro-TGG-3:TLE_Z tRNA-Pro-AGG-5:TLE_Z tRNA-Pro-AGG-2:TLE_Z tRNA-Pro-AGG-7:TLE_Z tRNA-Pro-AGG-10:TLE_Z tRNA-Pro-CGG-1:TLE_Z tRNA-Pro-TGG-7:TLE_Z tRNA-Pro-TGG-4:TLE_Z tRNA-Pro-AGG-13:TLE_Z tRNA-Pro-CGG-3:TLE_Z tRNA-Pro-AGG-9:TLE_Z tRNA-Pro-AGG-11:TLE_Z tRNA-Pro-AGG-4:TLE_Z Fragment Aminos Pro Fragment Alignment # STOCKHOLM 1.0 tRNA-Pro-AGG-1 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [1] tRNA-Pro-AGG-2 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCGAAUCCCGGACGAGCCCCCA [2] tRNA-Pro-AGG-3 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [3] tRNA-Pro-AGG-4 -GGCUUGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [4] tRNA-Pro-AGG-5 -GGCUCGUUGGUCUAGG--GGUG--UGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [5] tRNA-Pro-AGG-6 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGCGAGAUGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [6] tRNA-Pro-AGG-7 -GGCUCGUUGGUCUAGG--GGU--AUGAUUUUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [7] tRNA-Pro-AGG-9 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUCCAAAUCCCGGACGAGCCCCCA [8] tRNA-Pro-AGG-10 -GGCUCGUUGGUCUAG---GGUU-AUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [9] tRNA-Pro-AGG-11 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGCGAGAGAUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [10] tRNA-Pro-AGG-13 -GGCUCGUUGGUCUAGG--GGU--AUAAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [11] tRNA-Pro-AGG-15 -GGCUCAUUGGUCUAGG--GGU--AUGAUUCUCGCUUAGGGUGCGAGAGGUCCCAGGUUCAAAUCCCGGACGAGCCCCCA [12] tRNA-Pro-CGG-1 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [13] tRNA-Pro-CGG-2 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [14] tRNA-Pro-CGG-3 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCCUCGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [15] tRNA-Pro-CGG-7 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUCGGGUGCGAGAGGUCCCAGGUUCAAAUCCCGGACGAGCCCCCA [16] tRNA-Pro-CGG-10 -GGCUCGUUGGUCUA----GGU--AUGAUUCUCGCUUCGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [17] tRNA-Pro-TGG-1 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [18] tRNA-Pro-TGG-2 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGUGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [19] tRNA-Pro-TGG-3 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUUGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [20] tRNA-Pro-TGG-4 -GGCUCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCUGGGUUCAAAUCCCGGACGAGCCCCCA [21] tRNA-Pro-TGG-7 -GGCGCGUUGGUCUAGG--GGU--AUGAUUCUCGCUUUGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCCCCCA [22] 3004 ..............................................................AUCCCGGACGAGCCCCCA [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ // Fragment Cluster 19: 3015 Fragment Coverage tRNA-Trp-CCA-1:TLE_Z tRNA-Trp-CCA-5:TLE_Z tRNA-Trp-CCA-2:TLE_Z tRNA-Trp-CCA-9:TLE_Z tRNA-Trp-CCA-10:TLE_Z tRNA-Trp-CCA-3:TLE_Z tRNA-Trp-CCA-8:TLE_Z tRNA-Trp-CCA-7:TLE_Z Fragment Aminos Trp Fragment Alignment # STOCKHOLM 1.0 tRNA-Trp-CCA-1 -GACCUCGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCACCA [1] tRNA-Trp-CCA-2 -GACCUCGUAGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCACCA [2] tRNA-Trp-CCA-3 -GACCUCGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGCUGCGUGUUCGAAUCACGUCGGGGUCACCA [3] tRNA-Trp-CCA-5 -GACCUCGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCGUAUUCAAAUCACGUCGGGGUCACCA [4] tRNA-Trp-CCA-7 -GACCUCGUGGCGCAAC--GGU--AGCGCGUCUGACUCCAGAUCAGAAGGUUGCAUGUUCAAAUCACGUCGGGGUCACCA [5] tRNA-Trp-CCA-8 -GACCUCGUGGCGCAAC--GGU--AGCGCGUAUGAUUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCACCA [6] tRNA-Trp-CCA-9 -GACCUCGUGGCGCAAC--GGC--AGCGCGUCUGACUCCACAUUAGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCACCA [7] tRNA-Trp-CCA-10 -GACCUCGUGGUGCAAC--GGU--AGCGCGUAUGAUUCCAGAUCAGAAGGUUGCGUGUUCAAAUCACGUCGGGGUCACCA [8] 3015 ..............................................................AUCACGUCGGGGUCACCA [1,2,3,4,5,6,7,8] #=GC SS_cons :(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>))))))):::: #=GC RF +=======++====+++++++++++====+=====++***++=====+++++=====+++++++============++++ //