Fragment Cluster 1: 1007,1008 Fragment Coverage tRNA-Ala-TGC-2-28: tRNA-Ala-TGC-2-29: tRNA-Ala-TGC-2-24: tRNA-Ala-TGC-2-25: tRNA-Ala-TGC-2-26: tRNA-Ala-TGC-2-27: tRNA-Ala-TGC-2-22: tRNA-Ala-TGC-2-23: tRNA-Ala-TGC-10-1: tRNA-Ala-TGC-10-3: tRNA-Ala-TGC-10-2: tRNA-Ala-TGC-10-5: tRNA-Ala-TGC-10-4: tRNA-Ala-TGC-2-3: tRNA-Ala-TGC-2-20: tRNA-Ala-TGC-2-21: tRNA-Ala-TGC-13-2: tRNA-Ala-TGC-13-3: tRNA-Ala-TGC-13-1: tRNA-Ala-TGC-14-1: tRNA-Ala-TGC-2-9: tRNA-Ala-TGC-2-8: tRNA-Ala-TGC-2-34: tRNA-Ala-TGC-6-1: tRNA-Ala-TGC-2-4: tRNA-Ala-TGC-2-7: tRNA-Ala-TGC-15-1: tRNA-Ala-TGC-2-2: tRNA-Ala-TGC-2-15: tRNA-Ala-TGC-2-14: tRNA-Ala-TGC-2-17: tRNA-Ala-TGC-2-16: tRNA-Ala-TGC-2-11: tRNA-Ala-TGC-2-10: tRNA-Ala-TGC-2-12: tRNA-Ala-TGC-2-19: tRNA-Ala-TGC-8-1: tRNA-Ala-TGC-2-5: tRNA-Ala-TGC-7-1: tRNA-Ala-TGC-2-13: tRNA-Ala-TGC-2-33: tRNA-Ala-TGC-2-32: tRNA-Ala-TGC-2-31: tRNA-Ala-TGC-2-30: tRNA-Ala-TGC-2-35: tRNA-Ala-TGC-2-18: tRNA-Ala-TGC-2-6: tRNA-Ala-TGC-4-1: tRNA-Ala-TGC-2-1: Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-TGC-2-1 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [1] tRNA-Ala-TGC-2-2 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [2] tRNA-Ala-TGC-2-3 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGCGGGUCUCUCUUUUUAUGUGCGUGUA [3] tRNA-Ala-TGC-2-4 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [4] tRNA-Ala-TGC-2-5 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [5] tRNA-Ala-TGC-2-6 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUAGGUAUUCUUUUUAUGUGCGUGUAA [6] tRNA-Ala-TGC-2-7 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [7] tRNA-Ala-TGC-2-8 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [8] tRNA-Ala-TGC-2-9 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [9] tRNA-Ala-TGC-2-10 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUGUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [10] tRNA-Ala-TGC-2-11 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [11] tRNA-Ala-TGC-2-12 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [12] tRNA-Ala-TGC-2-13 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [13] tRNA-Ala-TGC-2-14 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [14] tRNA-Ala-TGC-2-15 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [15] tRNA-Ala-TGC-2-16 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [16] tRNA-Ala-TGC-2-17 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [17] tRNA-Ala-TGC-2-18 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [18] tRNA-Ala-TGC-2-19 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [19] tRNA-Ala-TGC-2-20 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [20] tRNA-Ala-TGC-2-21 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [21] tRNA-Ala-TGC-2-22 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [22] tRNA-Ala-TGC-2-23 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUGUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [23] tRNA-Ala-TGC-2-24 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [24] tRNA-Ala-TGC-2-25 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [25] tRNA-Ala-TGC-2-26 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGCGGGUCUCUCUUUUUAUGUGCGUGUA [26] tRNA-Ala-TGC-2-27 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [27] tRNA-Ala-TGC-2-28 GUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGUUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGAAGUGGGUCUCUCUUUUUAUGUGCGUGUA [28] tRNA-Ala-TGC-2-29 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [29] tRNA-Ala-TGC-2-30 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [30] tRNA-Ala-TGC-2-31 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUAGGUAUUCUUUUUAUGUGCGUGUAA [31] tRNA-Ala-TGC-2-32 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [32] tRNA-Ala-TGC-2-33 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUAGGUAUUCUUUUUAUGUGCGUGUAA [33] tRNA-Ala-TGC-2-34 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [34] tRNA-Ala-TGC-2-35 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [35] tRNA-Ala-TGC-4-1 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCACAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [36] tRNA-Ala-TGC-6-1 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACAGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUUUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [37] tRNA-Ala-TGC-7-1 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUUUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [38] tRNA-Ala-TGC-8-1 GGAUGGUUUCGAUCCAUCGACCUCCGCAAAAUAGCUUCAGCCAGGCUUCGGGuGGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAAGCAGGAGCGGGUCUCUCUUUUUAUGUGCGUGUA [39] tRNA-Ala-TGC-10-1 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAAUGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUAGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [40] tRNA-Ala-TGC-10-2 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAAUGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUAGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGAAGUGGGUCUCUCUUUUUAUGUGCUUGUA [41] tRNA-Ala-TGC-10-3 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAAUGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUAGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGAAGUGGGUCUCUCUUUUUAUGUGCGUGUA [42] tRNA-Ala-TGC-10-4 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAAUGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUAGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGAAGUGGGUCUCUCUUUUUAUGUGCUUGUA [43] tRNA-Ala-TGC-10-5 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAAUGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUAGG.UUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGAAGUGGGUCUCUCUUUUUAUGUGCUUGUA [44] tRNA-Ala-TGC-13-1 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCACCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [45] tRNA-Ala-TGC-13-2 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCACCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [46] tRNA-Ala-TGC-13-3 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGG.UUCAAUCACCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [47] tRNA-Ala-TGC-14-1 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUCUUGGGaUUCAAUCCCCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [48] tRNA-Ala-TGC-15-1 UUAUUAUCAAUGUUCAGGCAAUAAGCAAAACGGCUUUGACCAGGCUUUGGGG.GGAUGUAGCUCAGU--GGU--AGAGCGCAUGCUUUGCAUGUAUGAGGUUUUGGG.UUCAAUCACCAGCAUCUCCAACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUUUUUAUGUGCGUGUA [49] 1008 ................................................................................................................................ACCUGGGGCUCUUGAA.................................. [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49] 1007 ................................................................................................................................ACCUGGGGCUCUUGAAGGCAGGAGUGGGUCUCUCUU.............. [1,2,4,5,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,27,29,30,32,34,35,36,37,38,40,45,46,47,48,49] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::((.(((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<._______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................==.=====++====+++++++++++====+=====++***++=====+++++=====.+++++++============+.................................................. // Fragment Cluster 2: 1001 Fragment Coverage tRNA-Gln-CTG-2-7: tRNA-Gln-CTG-3-1: tRNA-Gln-CTG-2-5: tRNA-Gln-CTG-2-15: tRNA-Gln-CTG-2-17: Fragment Aminos Gln Fragment Mismatches A:+13:C:1 Fragment Alignment # STOCKHOLM 1.0 tRNA-Gln-CTG-2-5 CACGACCAUCUACGACACUCACGCUUCCGGAGGCAUGCCGAUCGUGCGUUGGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGAACCUGGGAUGGCUUUUCGCAGUCCGCCGCCUUGCCUUCUGCUCUCCCAAAAUCA [1] tRNA-Gln-CTG-2-7 CACGACCAUCUACGACACUCACGCUUCCGGAGGCAUGCCGAUCGUGCGUUGGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGAACCUGGGAUGGCUUUUCGCAGUCCGCCGCCUUGCCUUCUGCUCUCCCAAAAUCA [2] tRNA-Gln-CTG-2-15 CACGACCAUCUACGACACUCACGCUUCCGGAGGCAUGCCGAUCGUGCGUUGGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGAACCUGGGAUGGCUUUUCGCAGUCCGCCGCCUUGCCUUCUGCUCUCCCAAAAUCA [3] tRNA-Gln-CTG-2-17 CACGACCAUCUACGACACUCACGCUUCCGGAGGCAUGCCGAUCGUGUGUUGGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-UCCGAGUUCAAAUCUCGGUGGAACCUGGGAUGGCUUUUCGCAGUCCGCCGCCUUGCCUUCUGCUCUCCCAAAAUCA [4] tRNA-Gln-CTG-3-1 CACGACCAUCUACGACACUCACGCUUCCGGAGGCAUGCCGAUCGUGCGUUGGUUCCAUGGUGUAAU--GGUU-AGCACUCUGGACUCUGAAUCCAGCGA-ACCGAGUUCAAAUCUCGGUGGAACCUGGGAUGGCUUUUCGCAGUCCGCCGCCUUGCCUUCUGCUCUCCCAAAAUCA [5] 1001 ..............................................................................................................................GGGAUGGCUUUUA..................................... [1,2,3,4,5] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 3: 1002 Fragment Coverage tRNA-Ala-AGC-1-8: Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-AGC-1-8 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGCGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [1] 1002 ...............................................................................................................................GAGGCGGCUCUUUU................................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 4: 1003 Fragment Coverage tRNA-Ala-AGC-1-40: tRNA-Ala-AGC-1-41: tRNA-Ala-AGC-10-1: tRNA-Ala-AGC-1-39: tRNA-Ala-AGC-1-38: tRNA-Ala-AGC-1-31: tRNA-Ala-AGC-1-30: tRNA-Ala-AGC-1-33: tRNA-Ala-AGC-1-32: tRNA-Ala-AGC-1-35: tRNA-Ala-AGC-1-34: tRNA-Ala-AGC-1-37: tRNA-Ala-AGC-1-36: tRNA-Ala-AGC-12-1: tRNA-Ala-AGC-1-28: tRNA-Ala-AGC-1-29: tRNA-Ala-AGC-1-22: tRNA-Ala-AGC-1-20: tRNA-Ala-AGC-1-21: tRNA-Ala-AGC-1-27: tRNA-Ala-AGC-1-24: tRNA-Ala-AGC-1-25: tRNA-Ala-AGC-1-9: tRNA-Ala-AGC-1-3: tRNA-Ala-AGC-1-2: tRNA-Ala-AGC-1-1: tRNA-Ala-AGC-1-7: tRNA-Ala-AGC-1-6: tRNA-Ala-AGC-1-5: tRNA-Ala-AGC-1-4: tRNA-Ala-AGC-8-1: tRNA-Ala-AGC-1-19: tRNA-Ala-AGC-1-15: tRNA-Ala-AGC-1-14: tRNA-Ala-AGC-1-13: tRNA-Ala-AGC-1-12: tRNA-Ala-AGC-1-11: tRNA-Ala-AGC-1-10: tRNA-Ala-AGC-7-1: tRNA-Ala-AGC-4-1: tRNA-Ala-AGC-6-1: tRNA-Ala-AGC-11-4: tRNA-Ala-AGC-11-3: tRNA-Ala-AGC-11-2: tRNA-Ala-AGC-11-1: tRNA-Ala-AGC-9-1: tRNA-Ala-AGC-3-1: tRNA-Ala-AGC-5-1: tRNA-Ala-AGC-9-2: Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-AGC-1-1 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUAUGCUGGCGUUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGACCGGGUGGGCGGGGCUGCAACGUGCUUCUGU [1] tRNA-Ala-AGC-1-2 GCCCAAGUUGAGGUUUGUCAGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGUUUCUGU [2] tRNA-Ala-AGC-1-3 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [3] tRNA-Ala-AGC-1-4 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [4] tRNA-Ala-AGC-1-5 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [5] tRNA-Ala-AGC-1-6 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [6] tRNA-Ala-AGC-1-7 GCCCAAGUUGAGGUUUGUCGGAGGUCCUUUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [7] tRNA-Ala-AGC-1-9 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [8] tRNA-Ala-AGC-1-10 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [9] tRNA-Ala-AGC-1-11 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [10] tRNA-Ala-AGC-1-12 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGAGGGUGGGCGGGGCCGCAACACGCUUCUGU [11] tRNA-Ala-AGC-1-13 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [12] tRNA-Ala-AGC-1-14 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [13] tRNA-Ala-AGC-1-15 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [14] tRNA-Ala-AGC-1-19 NNNNNNNNNNNNNNNNNNNNNNNNNNCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [15] tRNA-Ala-AGC-1-20 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [16] tRNA-Ala-AGC-1-21 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [17] tRNA-Ala-AGC-1-22 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGAGGGUGGGCGGGGCCGCAACACGCUUCUGU [18] tRNA-Ala-AGC-1-24 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [19] tRNA-Ala-AGC-1-25 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCAGCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [20] tRNA-Ala-AGC-1-27 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [21] tRNA-Ala-AGC-1-28 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [22] tRNA-Ala-AGC-1-29 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [23] tRNA-Ala-AGC-1-30 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [24] tRNA-Ala-AGC-1-31 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCAGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [25] tRNA-Ala-AGC-1-32 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCAGCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [26] tRNA-Ala-AGC-1-33 GCCCAAGUUGAGGUUUGUCGGAGGUCCUUUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [27] tRNA-Ala-AGC-1-34 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [28] tRNA-Ala-AGC-1-35 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [29] tRNA-Ala-AGC-1-36 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [30] tRNA-Ala-AGC-1-37 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAAGGCGCUUCUGU [31] tRNA-Ala-AGC-1-38 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [32] tRNA-Ala-AGC-1-39 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCAGCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [33] tRNA-Ala-AGC-1-40 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCGCCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [34] tRNA-Ala-AGC-1-41 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [35] tRNA-Ala-AGC-3-1 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCAAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [36] tRNA-Ala-AGC-4-1 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGUGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [37] tRNA-Ala-AGC-5-1 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCACUGCACCGUGAGGGGGAUUAGCUCACAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [38] tRNA-Ala-AGC-6-1 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUUCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [39] tRNA-Ala-AGC-7-1 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCUGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [40] tRNA-Ala-AGC-8-1 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCACGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [41] tRNA-Ala-AGC-9-1 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUUGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCACUUCUGU [42] tRNA-Ala-AGC-9-2 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGGGCUGGUGCAGCACCGUGAGGGGGAUUUGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCAGGGCCGCAACGCGCUUCUGU [43] tRNA-Ala-AGC-10-1 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAC-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCAGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCACAACGAGCUUCUGU [44] tRNA-Ala-AGC-11-1 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGCUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [45] tRNA-Ala-AGC-11-2 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGCUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [46] tRNA-Ala-AGC-11-3 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGUGCUGGCGCUGCGCCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGCUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCACAACGCGCUUCUGU [47] tRNA-Ala-AGC-11-4 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCGCCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGCUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [48] tRNA-Ala-AGC-12-1 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCACGCGAGAGGUAGCGGGAUCGAUGCCUGCAUCCUCCAGGAGGUGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACACGCUUCUGU [49] 1003 ...............................................................................................................................GAGGUGGCUCUUUU................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 5: 1004 Fragment Coverage tRNA-Ala-AGC-1-23: tRNA-Ala-AGC-1-26: tRNA-Ala-AGC-1-17: Fragment Aminos Ala Fragment Alignment # STOCKHOLM 1.0 tRNA-Ala-AGC-1-17 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGAGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [1] tRNA-Ala-AGC-1-23 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCAGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGAGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [2] tRNA-Ala-AGC-1-26 GCCCAAGUUGAGGUUUGUCGGAGGUCCUGUGUGCUGGCGCUGCACCGUGAGGGGGAUUAGCUCAAAU-GGU--AGAGCGCUCGCUUAGCAUGCGAGAGGUAGCGGGAUCGAUGCCCGCAUCCUCCAGGAGGAGGCUCUUUUCAGAGCGGGUGGGCGGGGCCGCAACGCGCUUCUGU [3] 1004 ...............................................................................................................................GAGGAGGCUCUUUU................................... [1,2,3] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 6: 1005 Fragment Coverage tRNA-Leu-CAA-4-18: tRNA-Leu-CAA-4-14: tRNA-Leu-CAA-4-15: tRNA-Leu-CAA-4-10: tRNA-Leu-CAA-4-12: tRNA-Leu-CAA-4-13: tRNA-Leu-CAA-7-1: tRNA-Leu-CAA-4-8: tRNA-Leu-CAA-4-6: tRNA-Leu-CAA-4-7: tRNA-Leu-CAA-4-4: tRNA-Leu-CAA-4-5: tRNA-Leu-CAA-4-3: tRNA-Leu-CAA-4-1: tRNA-Leu-CAA-10-1: tRNA-Leu-CAA-4-9: tRNA-Asp-GTC-2-6: Fragment Aminos Leu Fragment Mismatches A:+13:C:1 Fragment Alignment # STOCKHOLM 1.0 tRNA-Asp-GTC-2-6 UGGGGCAGAUUUUAUUUCCCUGCAGCGGCUCCUUUAAGGCACAUAGCUAUUCCUCGUUAGUAUAGU--GGUA-AGUAUCCCCGCCUGUCA...........................CGCGGGAGA-CCGGGGUUCGAUUCCCCGACGGGGAGGCAAUCUUUUAUUAAGAAGCAUUUUAUACAAUUUUCUGUUGUAAUCAUAA [1] tRNA-Leu-CAA-4-1 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCGGCAGGCUUCUGUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGagugcagcucuuccccaggcuugggauUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [2] tRNA-Leu-CAA-4-3 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCGGCAGGCUUCUGUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGagugcagcucuuccccaggcuugggauUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [3] tRNA-Leu-CAA-4-4 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCGGCGGGCUUCUGUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGagugcagcucuuccccaggcuugggauUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [4] tRNA-Leu-CAA-4-5 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCGGCAGGCUUCUGUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGagugcagcucuuccccaggcuugggauUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [5] tRNA-Leu-CAA-4-6 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCAGCAGGCUUCUGUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGagugcagcucuuccccaggcuugggauUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [6] tRNA-Leu-CAA-4-7 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCAGCAGGCUUCUGUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGagugcagcucuuccccaggcuugggauUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [7] tRNA-Leu-CAA-4-8 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCGGCAGGCUUCUGUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGagugcagcucuuccccaggcuugggauUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [8] tRNA-Leu-CAA-4-9 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCGGCAGGCUUCUGUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGagugcagcucuuccccagguuugggauUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [9] tRNA-Leu-CAA-4-10 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCGGCAGGCUUCUGUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGagugcagcucuuccccaggcuugggauUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [10] tRNA-Leu-CAA-4-12 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCGGCAGGCUUCUGUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGagugcagcucuuccccaggcuugggauUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [11] tRNA-Leu-CAA-4-13 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCAGCAGGCUUCUGUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGagugcagcucuuccccaggcuugggauUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [12] tRNA-Leu-CAA-4-14 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCGGCAGGCUUCUGUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGagugcagcucuuccccaggcuugggauUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [13] tRNA-Leu-CAA-4-15 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCGGCAGGCUUCUGUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGagugcagcucuuccccaggcuugggauUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [14] tRNA-Leu-CAA-4-18 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCGGCAGGCUUCUGUCAGGAUGGCCGAGU--GGUCUAAGGCGCCAGACUCAAGagcgcagcuccuccccaggcuugggauUUCUGGU-G-CGUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [15] tRNA-Leu-CAA-7-1 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCAGCAGGCUUCUGUCAGGAUGGCCGAGU--GGUCUGAGGCGCCAGACUCAAGagugcagcucuuccccaggcuugggauUUCUGGU-G-CAUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [16] tRNA-Leu-CAA-10-1 AUUUAUAUUUAGAAUGUCUCAAUCCCCUCUCGCCAGCCCGGCAGGCUUCUGUCAGGAUGGCCAAGU--GGUCUAAGGCGCCAGACUCAAGagugcagcucuuccccaggcuugggauUUCUG-CUG-CGUGGGUUCAAAUCCCACUUCUGACAAGCGGCUCUUUUCCUCAACGGUAUAUUCUCGCCAUCGUUUCUACCAGCUC [17] 1005 .........................................................................................................................................................AGCGGCUCUUUUA..................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<______..........................._>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***+...........................+=====+++++=====+++++++============+.................................................. // Fragment Cluster 7: 1006 Fragment Coverage tRNA-Cys-GCA-6-5: tRNA-Cys-GCA-6-4: Fragment Aminos Cys Fragment Mismatches A:+1:G:1 Fragment Alignment # STOCKHOLM 1.0 tRNA-Cys-GCA-6-4 CAACCUGUUACAUUGUCUCAUUCUGCACUCUGAAACUCACCAUAUGUGCUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUCGACUGCAGAUCGAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUGGGCAGAUGUCAUUUUCCUGGAAUUUCAAUGCAAAGUUUAUUGAAUAUAA [1] tRNA-Cys-GCA-6-5 AAACCUGUUACAUUGUCUCAUUCUGCACUCUGAAACUCACCAUAUGUGCUGGGGGUAUAGCUCAGU--GGU--AGAGCAUUCGACUGCAGAUCGAGAGGUCCCUGGUUCAAAUCCGGGUGCCCCCUGGGCAGAUGUCAUUUUCCUGGAAUUUCAAUGCAAAGUUUAUUGAAUAUAA [2] 1006 ..............................................................................................................................AGGCAGAUGUCAUUUU.................................. [1,2] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 8: 1009 Fragment Coverage tRNA-Phe-GAA-2-1: tRNA-Phe-GAA-13-1: tRNA-Phe-GAA-8-1: tRNA-Phe-GAA-8-2: Fragment Aminos Phe Fragment Alignment # STOCKHOLM 1.0 tRNA-Phe-GAA-2-1 GGACUGCAGGCCCACGCCUGAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCAAUCCCGGGUUUCGGCAGGUGGAGCCGUGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [1] tRNA-Phe-GAA-8-1 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUGGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGUGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [2] tRNA-Phe-GAA-8-2 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUGGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGUGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [3] tRNA-Phe-GAA-13-1 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAACUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCACUGGUUCAAUCCCGGGUUUCGGCAGGUGGAGCCGUGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [4] 1009 ...............................................................................................................................GUGGAGCCGUGGAUUU................................. [1,2,3,4] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 9: 1010 Fragment Coverage tRNA-Ser-AGA-2-19: Fragment Aminos Ser Fragment Alignment # STOCKHOLM 1.0 tRNA-Ser-AGA-2-19 GCACUCAUCACCAAGUUAGGGUGUCAACCAGCUUUACUUUGCAGCAUCAUGUAGUCGUGGCCGAGU--GGUU-AAGGCGAUGGACUAGAAAUCCAUU-G-CGCAGGUUCGAAUCCUGCCGACUACGGGUUGCAUUUAUUUACCACUCCUCUCCCUCCAUGGACACAAUGUAGACAC [1] 1010 ..............................................................................................................................GGUUGCAUUUAUUUA................................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 10: 1011 Fragment Coverage tRNA-Lys-CTT-8-1: tRNA-Lys-CTT-7-1: tRNA-Lys-TTT-1-1: tRNA-Lys-CTT-9-1: tRNA-Lys-CTT-1-8: tRNA-Lys-CTT-11-1: tRNA-Lys-CTT-13-2: tRNA-Lys-CTT-18-1: tRNA-Lys-CTT-1-19: tRNA-Lys-CTT-1-9: tRNA-Lys-CTT-1-3: tRNA-Lys-CTT-1-2: tRNA-Lys-CTT-1-1: tRNA-Lys-CTT-1-7: tRNA-Lys-CTT-1-6: tRNA-Lys-CTT-1-5: tRNA-Lys-CTT-1-31: tRNA-Lys-CTT-1-30: tRNA-Lys-CTT-1-32: tRNA-Lys-CTT-1-4: tRNA-Lys-CTT-21-2: tRNA-Lys-CTT-21-1: tRNA-Lys-CTT-13-1: tRNA-Lys-CTT-1-28: tRNA-Lys-CTT-1-29: tRNA-Lys-CTT-1-22: tRNA-Lys-CTT-1-23: tRNA-Lys-CTT-1-20: tRNA-Lys-CTT-1-21: tRNA-Lys-CTT-1-26: tRNA-Lys-CTT-1-24: tRNA-Lys-CTT-1-25: tRNA-Lys-CTT-14-1: tRNA-Lys-CTT-1-14: tRNA-Lys-CTT-1-18: tRNA-Lys-CTT-1-17: tRNA-Lys-CTT-1-16: tRNA-Lys-CTT-1-15: tRNA-Lys-CTT-1-13: tRNA-Lys-CTT-1-12: tRNA-Lys-CTT-1-10: Fragment Aminos Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Lys-CTT-1-1 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [1] tRNA-Lys-CTT-1-2 AAAGGAAAAGGAAAGGCCGGCACCAGGGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [2] tRNA-Lys-CTT-1-3 AAAGGAAAAGGAAAGGCCGGCACCAGGGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [3] tRNA-Lys-CTT-1-4 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [4] tRNA-Lys-CTT-1-5 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACACCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [5] tRNA-Lys-CTT-1-6 AAAGGAAAAGGAAAGGCCGGCACCAGCACUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [6] tRNA-Lys-CTT-1-7 AAAGGAAAAUGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAAUGCAAACUAG [7] tRNA-Lys-CTT-1-8 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [8] tRNA-Lys-CTT-1-9 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCAGGAAAAACCGCAACGCAAACUAG [9] tRNA-Lys-CTT-1-10 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACACCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [10] tRNA-Lys-CTT-1-12 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACUGCAACGCAAACUAG [11] tRNA-Lys-CTT-1-13 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACACCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [12] tRNA-Lys-CTT-1-14 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [13] tRNA-Lys-CTT-1-15 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [14] tRNA-Lys-CTT-1-16 AAAGGAAAAGGAAAGGCUGGCACCAGCGCUCUGCCAAACGCUAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [15] tRNA-Lys-CTT-1-17 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [16] tRNA-Lys-CTT-1-18 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAGCGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [17] tRNA-Lys-CTT-1-19 AAAGGAAAAGGAAAGGCUGGCACCAGCGCUCUGCCAAACGCUAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [18] tRNA-Lys-CTT-1-20 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [19] tRNA-Lys-CTT-1-21 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAGCGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [20] tRNA-Lys-CTT-1-22 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [21] tRNA-Lys-CTT-1-23 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAAUGCAAACUAG [22] tRNA-Lys-CTT-1-24 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [23] tRNA-Lys-CTT-1-25 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAAUGCAAACUAG [24] tRNA-Lys-CTT-1-26 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [25] tRNA-Lys-CTT-1-28 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [26] tRNA-Lys-CTT-1-29 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [27] tRNA-Lys-CTT-1-30 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [28] tRNA-Lys-CTT-1-31 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [29] tRNA-Lys-CTT-1-32 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [30] tRNA-Lys-CTT-7-1 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGGGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [31] tRNA-Lys-CTT-8-1 AAAGGAAAAGGAAAGGCCGGCACCAGCACUCUGCCAAGCGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GAU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [32] tRNA-Lys-CTT-9-1 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCAUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [33] tRNA-Lys-CTT-11-1 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGGGACUCUUAAUCUCAGUGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCUUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [34] tRNA-Lys-CTT-13-1 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAAUGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGCUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [35] tRNA-Lys-CTT-13-2 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAAUGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGCUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [36] tRNA-Lys-CTT-14-1 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUCGUGGGUUCGAGCCACACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [37] tRNA-Lys-CTT-18-1 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGCCUCUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [38] tRNA-Lys-CTT-21-1 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGCCUCUUAAUCUCAGGGUCGUGGAUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [39] tRNA-Lys-CTT-21-2 GCAGUUCCUCCAUUCCCUUAUAAGAAAGGAGCAGCCUGGCCAGCGUGGUUGCCCGGCUAGCUCAGUC-GGU--AGAGCAUGAGCCUCUUAAUCUCAGGGUCGUGGAUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [40] tRNA-Lys-TTT-1-1 GAGGGCAAAGGAAAGGCCGGCACCAGCGCUCUGCCACACACCAGCGGGUUGCCCGGCUAGCUCAGUU-GGU--AGAGCAUGAGAUUUUUAAUCUCAGGGUCGUGGGUUCGAGCCCCACGUUGGGCGGCGUGCUCACCUUUUCUUGGCCGAGCGGGAAAAACCGUAACGCAAACUAG [41] 1011 ..............................................................................................................................GCGUGCUCACCUUU.................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 11: 1012 Fragment Coverage tRNA-Lys-CTT-6-1: Fragment Aminos Lys Fragment Alignment # STOCKHOLM 1.0 tRNA-Lys-CTT-6-1 AAAGGAAAAGGAAAGGCCGGCACCAGCGCUCUGCCAAACGCCAGCGGGUUGCCCGGCUAGCUCAGUU-GGU--AGAGCAUGAGACUCUUAAUCUCAGGGUUGUGGGUUCGAGCCCCACGUUGGGCGGCAUGCUCACCUUUUCCUGGCCGAGCGGGAAAAACCGCAACGCAAACUAG [1] 1012 ..............................................................................................................................GCAUGCUCACCUUUU................................... [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 12: 1013 Fragment Coverage tRNA-Arg-CCT-6-1: tRNA-Arg-CCT-6-2: tRNA-Arg-CCT-2-5: tRNA-Arg-CCT-2-7: tRNA-Arg-CCT-2-6: tRNA-Arg-CCT-2-1: tRNA-Arg-CCT-2-3: tRNA-Arg-CCT-2-2: tRNA-Arg-CCT-2-8: tRNA-Arg-CCT-4-1: tRNA-Arg-CCT-2-24: tRNA-Arg-CCT-2-20: tRNA-Arg-CCT-2-22: tRNA-Arg-CCT-2-23: tRNA-Arg-CCT-5-1: tRNA-Arg-CCT-2-19: tRNA-Arg-CCT-2-18: tRNA-Arg-CCT-2-4: tRNA-Arg-CCT-2-15: tRNA-Arg-CCT-2-14: tRNA-Arg-CCT-2-17: tRNA-Arg-CCT-2-16: tRNA-Arg-CCT-2-11: tRNA-Arg-CCT-2-10: tRNA-Arg-CCT-2-13: tRNA-Arg-CCT-2-12: Fragment Aminos Arg Fragment Alignment # STOCKHOLM 1.0 tRNA-Arg-CCT-2-1 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [1] tRNA-Arg-CCT-2-2 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [2] tRNA-Arg-CCT-2-3 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [3] tRNA-Arg-CCT-2-4 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [4] tRNA-Arg-CCT-2-5 UUUUUUGAGUACCUGACAGAGAACAAUAAUCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [5] tRNA-Arg-CCT-2-6 UUUUUUGAGUACCUGACAGAGAACAAUAAUCCACAAGCUCAGCUAAGGGUGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [6] tRNA-Arg-CCT-2-7 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [7] tRNA-Arg-CCT-2-8 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [8] tRNA-Arg-CCT-2-10 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [9] tRNA-Arg-CCT-2-11 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [10] tRNA-Arg-CCT-2-12 UUUUUUGAGUACCUGACAGAGAACAAUAAUCCACAAGCUCAGCUAAGGGUGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [11] tRNA-Arg-CCT-2-13 UUUUUUGAGUACCUGACAGAGAACAAUAAUCCACAAGCUCAGCUAAGGGUGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [12] tRNA-Arg-CCT-2-14 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [13] tRNA-Arg-CCT-2-15 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [14] tRNA-Arg-CCT-2-16 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAGUC [15] tRNA-Arg-CCT-2-17 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [16] tRNA-Arg-CCT-2-18 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [17] tRNA-Arg-CCT-2-19 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [18] tRNA-Arg-CCT-2-20 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [19] tRNA-Arg-CCT-2-22 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [20] tRNA-Arg-CCT-2-23 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [21] tRNA-Arg-CCT-2-24 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [22] tRNA-Arg-CCT-4-1 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-ACGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [23] tRNA-Arg-CCT-5-1 UUUUUUGAGUACCUGACAGAGAACAAUAAGCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUAAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUGGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [24] tRNA-Arg-CCT-6-1 UUUUUUGAGUACCUGACAGAGAACAAUAAUCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUCAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [25] tRNA-Arg-CCT-6-2 UUUUUUGAGUACCUGACAGAGAACAAUAAUCCACAAGCUCAGCUAAGGGCGCCCCAGUGGCCUCAU--GGAU-AAGGCACUGGCCUCCUAAGCCAGGGAUUGUGGGUUCGAGUCCCAUCUGGGGUACUCACGGUGCAUCCUUUAUGUAAAGUGGAUUGGAGGAGACGGCGGCAUUC [26] 1013 ...............................................................................................................................UCACGGUGCAUCCUUU................................. [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 13: 1014 Fragment Coverage tRNA-Phe-GAA-1-16: Fragment Aminos Phe Fragment Alignment # STOCKHOLM 1.0 tRNA-Phe-GAA-1-16 UACAUUUAGUUACGUCAUAACAGACACCGGUGCCCGGUACCGACACGGCAGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGAAGCUGGCUGCACUUUUUGUUUUAAAGCCUCAUAUAAGCGCAGGGCUGA [1] 1014 ...............................................................................................................................AAGCUGGCUGCACUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 14: 1015 Fragment Coverage tRNA-Phe-GAA-1-9: Fragment Aminos Phe Fragment Alignment # STOCKHOLM 1.0 tRNA-Phe-GAA-1-9 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAUCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCAGAUUUUGAGAGCGUUUUAACUAGGUGCGAUGAAGGCCA [1] 1015 ...............................................................................................................................GUGGAGCCGCAGAUUUU................................ [1] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 15: 1016 Fragment Coverage tRNA-Phe-GAA-1-4: tRNA-Phe-GAA-1-28: tRNA-Phe-GAA-1-6: tRNA-Phe-GAA-1-8: tRNA-Phe-GAA-1-2: tRNA-Phe-GAA-1-3: tRNA-Phe-GAA-1-11: tRNA-Phe-GAA-13-2: tRNA-Phe-GAA-6-2: tRNA-Phe-GAA-6-1: tRNA-Phe-GAA-1-46: tRNA-Phe-GAA-1-5: tRNA-Phe-GAA-12-1: tRNA-Phe-GAA-9-1: tRNA-Phe-GAA-1-7: tRNA-Phe-GAA-1-14: tRNA-Phe-GAA-1-15: tRNA-Phe-GAA-1-12: tRNA-Phe-GAA-1-13: tRNA-Phe-GAA-1-10: tRNA-Phe-GAA-11-2: tRNA-Phe-GAA-1-23: tRNA-Phe-GAA-1-27: tRNA-Phe-GAA-1-26: tRNA-Phe-GAA-1-25: tRNA-Phe-GAA-1-29: tRNA-Phe-GAA-1-35: tRNA-Phe-GAA-1-36: tRNA-Phe-GAA-1-37: tRNA-Phe-AAA-1-1: tRNA-Phe-GAA-1-30: tRNA-Phe-GAA-1-31: tRNA-Phe-GAA-1-32: tRNA-Phe-GAA-1-33: tRNA-Phe-GAA-1-39: tRNA-Phe-GAA-4-1: tRNA-Phe-GAA-11-1: tRNA-Phe-GAA-1-38: tRNA-Phe-GAA-7-1: tRNA-Phe-GAA-1-41: tRNA-Phe-GAA-1-40: tRNA-Phe-GAA-1-43: tRNA-Phe-GAA-1-42: tRNA-Phe-GAA-1-45: tRNA-Phe-GAA-1-44: tRNA-Phe-GAA-3-1: Fragment Aminos Phe Fragment Alignment # STOCKHOLM 1.0 tRNA-Phe-AAA-1-1 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUAAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [1] tRNA-Phe-GAA-1-2 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [2] tRNA-Phe-GAA-1-3 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [3] tRNA-Phe-GAA-1-4 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [4] tRNA-Phe-GAA-1-5 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [5] tRNA-Phe-GAA-1-6 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [6] tRNA-Phe-GAA-1-7 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [7] tRNA-Phe-GAA-1-8 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [8] tRNA-Phe-GAA-1-10 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [9] tRNA-Phe-GAA-1-11 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUUCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [10] tRNA-Phe-GAA-1-12 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [11] tRNA-Phe-GAA-1-13 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [12] tRNA-Phe-GAA-1-14 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [13] tRNA-Phe-GAA-1-15 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGACUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [14] tRNA-Phe-GAA-1-23 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [15] tRNA-Phe-GAA-1-25 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [16] tRNA-Phe-GAA-1-26 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [17] tRNA-Phe-GAA-1-27 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGACUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [18] tRNA-Phe-GAA-1-28 ACUGCAGGCCCACGCCUUAGCAGGGCGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [19] tRNA-Phe-GAA-1-29 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [20] tRNA-Phe-GAA-1-30 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGACUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [21] tRNA-Phe-GAA-1-31 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [22] tRNA-Phe-GAA-1-32 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [23] tRNA-Phe-GAA-1-33 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [24] tRNA-Phe-GAA-1-35 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [25] tRNA-Phe-GAA-1-36 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [26] tRNA-Phe-GAA-1-37 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [27] tRNA-Phe-GAA-1-38 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [28] tRNA-Phe-GAA-1-39 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [29] tRNA-Phe-GAA-1-40 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [30] tRNA-Phe-GAA-1-41 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [31] tRNA-Phe-GAA-1-42 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [32] tRNA-Phe-GAA-1-43 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [33] tRNA-Phe-GAA-1-44 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGGUA [34] tRNA-Phe-GAA-1-45 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGUUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [35] tRNA-Phe-GAA-1-46 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [36] tRNA-Phe-GAA-3-1 CGUAUUGCUCCCCCUGGGGAGAAAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUUGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [37] tRNA-Phe-GAA-4-1 GGACUGCAGGCCCACGCCUGAGCAGGGCACUUGCCGCCGGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCAGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [38] tRNA-Phe-GAA-6-1 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGCCUGCAGCUGUGCCAAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [39] tRNA-Phe-GAA-6-2 GGACUGCAGGCCCACGCCUUAGCAGGGUGCUUGCCGCCGGCUGCAGCUGUGCCAAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [40] tRNA-Phe-GAA-7-1 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCAGCUGCAGCUGUGCCGAAAUAGCUCAGUU-GGG--AGAGUGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [41] tRNA-Phe-GAA-9-1 GGACUGCAGGCCCAGGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCAAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCAGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [42] tRNA-Phe-GAA-11-1 NNNNNNNNNNNNNNNNNNNNNNNNNNNCGCUUGCCGCCGGCUGCAGCUGUGCCGCAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [43] tRNA-Phe-GAA-11-2 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAGCUGUGCCGCAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUCGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [44] tRNA-Phe-GAA-12-1 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCACCGGCUGCAGCUGUGCCGAAAUGGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCCCUGGUUUGAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [45] tRNA-Phe-GAA-13-2 GGACUGCAGGCCCACGCCUUAGCAGGGCGCUUGCCGCCGGCUGCAACUGUGCCGAAAUAGCUCAGUU-GGG--AGAGCGUUAGACUGAAGAUCUAAAGGUCACUGGUUCAAUCCCGGGUUUCGGCAGGUGGAGCCGCGGAUUUUGAGAGCGUUUUAACUAGGCGCGAUGAAGGCCA [46] 1016 ...............................................................................................................................GUGGAGCCGCGGAUUUU................................ [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 16: 1017 Fragment Coverage tRNA-Gly-GCC-1-36: tRNA-Gly-GCC-1-28: tRNA-Gly-GCC-1-44: tRNA-Gly-GCC-1-45: tRNA-Gly-TCC-1-1: tRNA-Gly-GCC-1-41: tRNA-Gly-GCC-1-22: tRNA-Gly-GCC-1-16: tRNA-Gly-GCC-8-1: tRNA-Gly-GCC-1-58: tRNA-Gly-GCC-1-38: tRNA-Gly-GCC-1-54: tRNA-Gly-GCC-1-14: tRNA-Gly-GCC-1-30: tRNA-Gly-GCC-1-32: tRNA-Gly-GCC-1-8: tRNA-Gly-GCC-1-18: tRNA-Gly-GCC-10-1: tRNA-Gly-GCC-6-1: tRNA-Gly-GCC-1-12: tRNA-Gly-GCC-1-11: tRNA-Gly-GCC-1-2: tRNA-Gly-GCC-1-6: tRNA-Gly-GCC-12-1: tRNA-Gly-GCC-1-26: tRNA-Gly-GCC-1-34: tRNA-Gly-GCC-1-52: tRNA-Gly-GCC-1-43: tRNA-Gly-GCC-1-66: tRNA-Gly-GCC-1-67: tRNA-Gly-GCC-1-64: tRNA-Gly-GCC-1-62: tRNA-Gly-GCC-1-60: tRNA-Gly-GCC-1-74: tRNA-Gly-GCC-1-69: tRNA-Gly-GCC-1-71: tRNA-Gly-GCC-1-72: tRNA-Gly-GCC-1-20: tRNA-Gly-GCC-1-56: tRNA-Gly-GCC-1-10: Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-GCC-1-2 GUCUGAGGGAGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [1] tRNA-Gly-GCC-1-6 GUCUGAGGGAGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [2] tRNA-Gly-GCC-1-8 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAAGGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [3] tRNA-Gly-GCC-1-10 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [4] tRNA-Gly-GCC-1-11 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACAGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [5] tRNA-Gly-GCC-1-12 GUCUGAGGGAGCCUCGUGGGAAUCUGAGCAGCAACUGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [6] tRNA-Gly-GCC-1-14 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [7] tRNA-Gly-GCC-1-16 GUCUGAGGGAGCCUCGUGGGAAUCUGGGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [8] tRNA-Gly-GCC-1-18 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [9] tRNA-Gly-GCC-1-20 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [10] tRNA-Gly-GCC-1-22 GUCUGAGGGAGCCUCGUGGGAAUCUGAGCAGCAACUGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [11] tRNA-Gly-GCC-1-26 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCUAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [12] tRNA-Gly-GCC-1-28 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [13] tRNA-Gly-GCC-1-30 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [14] tRNA-Gly-GCC-1-32 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [15] tRNA-Gly-GCC-1-34 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUUGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGCCGCGCUC [16] tRNA-Gly-GCC-1-36 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACAGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [17] tRNA-Gly-GCC-1-38 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACAGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [18] tRNA-Gly-GCC-1-41 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [19] tRNA-Gly-GCC-1-43 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [20] tRNA-Gly-GCC-1-44 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [21] tRNA-Gly-GCC-1-45 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACAGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [22] tRNA-Gly-GCC-1-52 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAAAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [23] tRNA-Gly-GCC-1-54 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [24] tRNA-Gly-GCC-1-56 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [25] tRNA-Gly-GCC-1-58 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAAAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [26] tRNA-Gly-GCC-1-60 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [27] tRNA-Gly-GCC-1-62 GUCUGAGGGAGCCUCGUGGGAAUCUGGGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [28] tRNA-Gly-GCC-1-64 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [29] tRNA-Gly-GCC-1-66 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [30] tRNA-Gly-GCC-1-67 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [31] tRNA-Gly-GCC-1-69 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [32] tRNA-Gly-GCC-1-71 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [33] tRNA-Gly-GCC-1-72 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGAGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [34] tRNA-Gly-GCC-1-74 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUUGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGCCGCGCUC [35] tRNA-Gly-GCC-6-1 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGCGG-CCUGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [36] tRNA-Gly-GCC-8-1 GUCUGAGCACGCCUCGUGGCAAUCUGAGUAGCAGUGGCACGGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCACCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [37] tRNA-Gly-GCC-10-1 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUUCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [38] tRNA-Gly-GCC-12-1 GUCUGAGGGCGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGGCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [39] tRNA-Gly-TCC-1-1 GUCUGAGGGAGCCUCGUGGGAAUCUGAGUAGCAACGGCAUAGCGUGCAUAGCAUUGGUGGUUCAGU--GGU--CGAAUUCUCGCCUUCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCAAGAGCUGCGUUUUGCCAGGGGUUCCCCACUAGAGCCUUCCCGGCGCGCUC [40] 1017 ..............................................................................................................................AGAGCUGCGUUUU..................................... [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. // Fragment Cluster 17: 1018 Fragment Coverage tRNA-Gly-GCC-1-33: tRNA-Gly-GCC-1-55: tRNA-Gly-GCC-1-70: tRNA-Gly-GCC-1-49: tRNA-Gly-GCC-1-9: tRNA-Gly-GCC-1-39: tRNA-Gly-GCC-1-59: tRNA-Gly-GCC-1-21: tRNA-Gly-GCC-1-19: tRNA-Gly-GCC-1-17: tRNA-Gly-GCC-1-29: tRNA-Gly-GCC-1-51: tRNA-Gly-GCC-15-1: tRNA-Gly-GCC-11-1: tRNA-Gly-GCC-1-57: tRNA-Gly-GCC-1-46: tRNA-Gly-GCC-1-13: tRNA-Gly-GCC-1-37: tRNA-Gly-GCC-1-47: tRNA-Gly-GCC-1-53: tRNA-Gly-GCC-1-23: tRNA-Gly-GCC-1-5: tRNA-Gly-GCC-1-40: tRNA-Gly-GCC-1-61: tRNA-Gly-GCC-9-1: tRNA-Gly-GCC-1-1: tRNA-Gly-GCC-1-31: tRNA-Gly-GCC-1-50: tRNA-Gly-GCC-1-35: tRNA-Gly-GCC-1-27: tRNA-Gly-GCC-1-15: tRNA-Gly-GCC-1-65: tRNA-Gly-GCC-1-63: tRNA-Gly-GCC-7-1: tRNA-Gly-GCC-1-68: tRNA-Gly-GCC-1-25: tRNA-Gly-GCC-1-73: tRNA-Gly-GCC-1-3: tRNA-Gly-GCC-13-1: tRNA-Gly-GCC-1-42: tRNA-Gly-GCC-5-1: tRNA-Gly-GCC-1-7: Fragment Aminos Gly Fragment Alignment # STOCKHOLM 1.0 tRNA-Gly-GCC-1-1 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [1] tRNA-Gly-GCC-1-3 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [2] tRNA-Gly-GCC-1-5 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [3] tRNA-Gly-GCC-1-7 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCUGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [4] tRNA-Gly-GCC-1-9 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [5] tRNA-Gly-GCC-1-13 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [6] tRNA-Gly-GCC-1-15 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [7] tRNA-Gly-GCC-1-17 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUACCCGAG [8] tRNA-Gly-GCC-1-19 GUUCUGUGCUGUUGGUCACGUCAAUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [9] tRNA-Gly-GCC-1-21 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [10] tRNA-Gly-GCC-1-23 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [11] tRNA-Gly-GCC-1-25 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [12] tRNA-Gly-GCC-1-27 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [13] tRNA-Gly-GCC-1-29 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [14] tRNA-Gly-GCC-1-31 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [15] tRNA-Gly-GCC-1-33 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [16] tRNA-Gly-GCC-1-35 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCUAACCGAGGCAGCUUU [17] tRNA-Gly-GCC-1-37 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [18] tRNA-Gly-GCC-1-39 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [19] tRNA-Gly-GCC-1-40 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [20] tRNA-Gly-GCC-1-42 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [21] tRNA-Gly-GCC-1-46 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [22] tRNA-Gly-GCC-1-47 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [23] tRNA-Gly-GCC-1-49 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [24] tRNA-Gly-GCC-1-50 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [25] tRNA-Gly-GCC-1-51 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [26] tRNA-Gly-GCC-1-53 GUUCUGUGCUGUUGGUCACGUCAGUACGUACAGUUCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [27] tRNA-Gly-GCC-1-55 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [28] tRNA-Gly-GCC-1-57 GUUCUGUGCUGUUGGUCACGUCAGUAUGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [29] tRNA-Gly-GCC-1-59 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [30] tRNA-Gly-GCC-1-61 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [31] tRNA-Gly-GCC-1-63 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUACCCGAG [32] tRNA-Gly-GCC-1-65 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [33] tRNA-Gly-GCC-1-68 UGGACUUGUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [34] tRNA-Gly-GCC-1-70 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [35] tRNA-Gly-GCC-1-73 GUUCUGUGCUGUUGGUCACGUCAGUAUGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [36] tRNA-Gly-GCC-5-1 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGG--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [37] tRNA-Gly-GCC-7-1 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCACCUGCCAUGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [38] tRNA-Gly-GCC-9-1 CUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCAGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [39] tRNA-Gly-GCC-11-1 GUUCUGUGCUGUUGGUCACGUCAGUACGCAAAGUCCGGCGGCCGGCCGUGGCAUUGGUUGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [40] tRNA-Gly-GCC-13-1 GUUCUGUGCUGUUGGUCACGUCAGUACGCACAGUCCGGCGGCCGGCCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCCGGGUUCGAUUCCCUGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUCGUGCCCCGCCGCUAACCGAG [41] tRNA-Gly-GCC-15-1 GUUCUGUGCUGUUGGUCACGUUGGUACGCACAGUCCGGCGGCUGACCGUGGCAUUGGUGGUUCAGU--GGU--AGAAUUCUCGCCUGCCACGCGGGAGG-CCUGGGUUCGAUUCCUGGCCAAUGCACCCCUCGGCUUUCUUUUCUUCAAAAGCCUUGUGCCCCGCCGCUAAUCGAG [42] 1018 ..............................................................................................................................CCCCUCGGCUUUCUUU.................................. [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42] #=GC SS_cons ::::::::::::::::::::::::::::::::::::::::::::::::::(((((((,,<<<<___________>>>>,<<<<<_______>>>>>,,,,,<<<<<_______>>>>>)))))))::::::::::::::::::::::::::::::::::::::::::::::::::: #=GC RF ..................................................=======++====+++++++++++====+=====++***++=====+++++=====+++++++============+.................................................. //