Pre-built tDRnamer reference databases
The following reference databases have been pre-built to be used with tDRnamer. To use these databases, decompress the tarball using tar xzf command. Additional databases can be made available upon request. Alternatively, databases can be built using using the create_tDRnamer_db tool.
Eukaryotes
- Arabidopsis thaliana (TAIR10)
- Caenorhabditis elegans (WBcel235/ce11)
- Canis familiaris (UU_Cfam_GSD_1.0/canFam4)
- Drosophila melanogaster (Release 6 plus ISO1 MT/dm6)
- Homo sapiens (GRCh37/hg19)
- Homo sapiens (GRCh38/hg38)
- Mus musculus (GRCm38/mm10)
- Mus musculus (GRCm39/mm39)
- Rattus norvegicus (Rnor_6.0/rn6)
- Rattus norvegicus (mRatBN7.2/rn7)
- Saccharomyces cerevisiae S288c
- Schizosaccharomyces pombe 972h-
Bacteria
- Bacillus subtilis 168
- Escherichia coli K-12 MG1655
- Helicobacter pylori J99
- Mycobacterium tuberculosis H37Rv
Archaea
- Haloferax volcanii DS2
- Methanosarcina barkeri str Fusaro
- Methanococcus maripaludis S2
- Thermococcus kodakarensis KOD1